LOC110492825 (fezf1)


Basic Information

Item Value
gene id LOC110492825
gene name fezf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60262699 ~ 60267392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567308.2
tttttatttcaattgGAAGAGATCAAACAGTGTAAACAGTCTAAATAAAAATTGCTGTAACGGAACGCAGACAGTTTCAATCAATGCGCATATTTACCTTGTTCATTGACAGGATTGTCATTGAGCATTCTTCTAGATATACCCAGATGAAACGTTCCACGTTATTACCAATATGACTTCAACAAGAACAGTGGACAAGCTTTCATTACTGTACATTCGCTAGAGAAGTTGTTGCTCGGATACATACACCTCTCCTGACTGCGCAAACCTATAGTCCTTGAGGCACATATGGAGCTCATCGTGCACACCTCCGCAGTCCCACCGGCTTTGGGTTTACTTGAGCTTCCTCGTGTATGGCAGactgataaaaaaaaatgaatagctCTACTTTAATTAACTTAGTGTTTTATGAAAATACTGTAGCCTATATTGGATTTTATACAGTAGCCTAAATGTAAAGGCCCACCTTAAGATAAGCTTTTTATCAAAATGTATCCACTAGAATTCAGATTAGATTGTAATGTGTTCTgcatagtgttttttttttgttgttggattACTATAGAGACAATTATAATTGTTAATTCGGTTAAAAACGCAATGAGTATAAAGGTAGCGTCATGTGTCTGACCAATTTTAAAATATTGGCCTAGGACTAGGTCCTAATAGCTGAGTTATAGTATAGTAAAGAGGATTTATACATCTACTGCTTTGTACATTTTTATAAATAACAGTTCATCTTTAATATGAGCATAATACACATTCGTAAAACCAATGCCTATATTAGTTAGAATTGTTGCATGCTTAAAATATCATGCACCAATTAAGATATCAAATTCTGATATGTCAAATGCTGACATCCTCTGACCCCACAGAGCGCCTGTCTTGTGCGATTTCAAATGATGTCACACGAAACCACAAGGGGAACTCAGATTTGCCAAAAGCTTTACAGTTATACAAGACTCCGGCCACCAAAGAACAGCTCCTTTGCGACGCGGGTAAGACCAACGTTATCGTAGCAGTAGCCTAGTAGATGGGCCACAAGTGGAGAATTGATGGAAGAGAATTGAGCAATTATCTACTTTACTTTTTCTTCTTGGGCGGTGACTATTGGTGAGGTCTTGGCTGCGTTATTGACTCAACACGCCTTATTGAGCAGTCGTGCTAGACATAAGTGCTGGTTTTCCGGAATCAACGCAAGCGAGAACAGTGAGGGGGCTCTCGTCGACTCCGAGTGTGCCGAATGATGTCCTTTCTGTCGGGGCAGTGAGAAGGAATCAAAGGTATCTACAAAAGGACCACCAACGCCTGCTTTTCAAAGGTGTTGTTTTGAGAGTTATGGACAGTGCGCTCTACCACTCAGCGGGAATTTTCGGCACCCCCTCGGCTTCTAGAAACTTGACTGCGGGCGGAAACATGATCACCTCCACCAAGCCTCTCGCTTTTTCGATCGAACGGATTATGGCCAGGACGCCCGAGCCAAAGTCGATACCTTTCCCCAACCTGTTCCATCACACTCCGGTGGGCAAAGCGGACCCGAAGCAGGCGCTCAACATGACTTCATCATCACTGCATTGCATGATACCATTAGTGCCATTGGCATACGAACCGGGTCATAAACTAAATATGAATGGATTAGATACGAGTCACTTTGACGCTTCCTCGTATAATTCAAATGAGTTGGTCAGCATTGGTTTGAACTATAAGAACGAACAACCAGATCTGAGCTCGTCGGTGGGACAATACAAACTTTTTCGACCACGGGTGGTAAACCAGTCATCTTTTCATGCCATGGGAGCTGTGTGCTACCTGAACTGCGGGCAGAGTGCATGCCCACCCCCAGCCAGCATCGTAAACATCCACCCCATGGCCTCCTACTTTCTCAACACTCCACTGCAGCATGCACGCCAGAGAGCTTTCCTCGCGGAGAAAAATAAAGTGTCTCACTGTGCAGACAGATACGCATCCGGAGTTAAAGACATTTCCCAAACTCAACTCCATCACTACATGAAAGAGAGCGCACAGATTATATCGGACAAACTATTCAAGGGCTCTTCCAAATTGAACAGTGGTTGCCCAAGCGGCAAACCCAAAGTATTCACCTGCGAGGTTTGCGGAAAGGTGTTCAACGCCCACTACAATTTAACGCGCCATATGCCCGTGCACACTGGAGCGAGACCATTCATCTGCAAAGTATGCGGCAAGGGATTTCGACAAGCAAGCACCCTTTGTCGCCACAAAATTATTCATACTCAGGAAAAGCCTCATAAATGCAACCAATGTGGAAAAGCGTTCAACCGGAGTTCAACTCTTAACACTCACACACGAATCCATGCAGGTTACAAACCCTTCGTCTGTGAGTTCTGCGGCAAAGGATTTCACCAAAAAGGTAATTACAAGAACCACAAATTGACGCACAGCGGGGAGAAACAGTTCAAATGCAACATCTGTAACAAGGCCTTCCACCAAGTGTACAACCTGACGTtccacatgcacacgcacaatGACAAGAAGCCCTTCACGTGCCCGACTTGCGGCAAGGGATTCTGTAGGAACTTTGACCTGAAAAAGCACATGCGAAAACTACACGATCTCTCTGGATCCCAATCCCCTGCCACTCTCACCACAGGCGAAACTGACTAAAAAGCTCAGAGGCTAAAATGCCAACCATGCGCCTTTACGCACACTGATTTGCCCAAATCTGGAATTACGCATGCGAGTTTAGACCGCGCAAAGATGCTGTGGACTATTCTATTAGTACATATTTTCCTTGAATTTGACATTATAATGTCACTATACTGTTGTTTTAAATCTCAGGATTACTGTAAAATGTCGATATTTATTTGAAACTTTATAGGCTAATAATTTAAGAGAATAATTGAAGACTGTACAAATTATGTTTTGCTGTGATAAGTGTGGTAGCCTACCCCATTTTATATGATGCCCTTGATAAAGTTACAAGATTTTCCAACACTTGTGTATATGCAAAGTTTTGCAGGAAACGAGTGTCTTTGACACAACCTATAGGCTATGTTTTTAAACAGGTGCACAAACTCAATCATTTAAgttatgaaaataaaataatgacaatAAAATGAAACTCTGTACATGTCATATTGTGTCCGATATCCTATTTGACTGACATGATTAAGAAAAGGAGTTCCATTATTTAGAAAGTGATGAACATAGCCTAGGCCAAAATATTGCATGATGGTGAGAGGAAATATTCGGGTTAATaataacagtagtagtattagtagtaataataatatccTAATATAACTTTACTGTTATTATTGTCATCATCATAGGCCTACGATTGTTGTAGTGATAATTAGGTCTATATCATCTATATGGAGGATAATCAGTGCCACTTTAAAAATGACATGCTAAATTGGAATATCAAAATGACAAATGCATTTCTATTTTCATATCAGTGTGCATGATTCGTGTCACAATGAATTGCCGTGTTAACATGACAATCGAAAATGCTAAATGAAAATGCTAAATGGTACATCGAAAATGGAAAATGGTAAACAGAAAATTCTAAATGTAATGCTCAAAGTGAAATGGAAAGTGCTtgtttttatttttcaactgCCCAATGTACAATTTTCTCTTTTCATTTTCAAAGTGTATGCAAATTGTTTCCTGGAGGCTGAACCACGAGATCAACATGACTCCATCGTGCATTGCTACATCCTAGCTCTGTATATTGATTTTAGCGTAAACAACAGGGTTCAGACCCGATTACCTTTACACCAAAATAACATTTGGCATGCTAACCCAAAGCCTAGGCAATTTATCTTGGTGAGCCAATGCAATTTTTCTTGTCTCAGGCAAAGTTACTCAACATCAGACATCGTTACTCATCACAGGTGCTTGGTCACTGAACCACCTTTGTTACA

Function

symbol description
fezf1 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in nucleus. Is expressed in hypothalamus. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 22 with or without anosmia. Orthologous to human FEZF1 (FEZ family zinc finger 1).

NR:

description
fez family zinc finger protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24502 FEZF; Fez family zinc finger protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567308.2 True 3908 mRNA 0.41 4 60262699 60267392

Neighbor

gene id symbol gene type direction distance location
LOC110501720 cadps2 coding upstream 11602 59986065 ~ 60251097 (+)
iqub iqub coding upstream 285378 59969706 ~ 59977321 (+)
LOC110501704 wasl coding upstream 339976 59900130 ~ 59922883 (+)
LOC110492759 gpr37 coding upstream 480842 59774163 ~ 59781857 (+)
LOC110492752 LOC106561032 coding upstream 619450 59402177 ~ 59643249 (+)
LOC110501735 NA coding downstream 6992 60274384 ~ 60288852 (+)
LOC110492846 LOC106561021 coding downstream 131484 60398876 ~ 60406820 (+)
syt8 LOC106561125 coding downstream 360546 60627938 ~ 60639516 (+)
LOC110492948 LOC106561016 coding downstream 387209 60654601 ~ 60666601 (+)
LOC110492922 LOC106561015 coding downstream 415588 60682980 ~ 60695886 (+)
G166370 NA non-coding upstream 895 60261578 ~ 60261804 (+)
G166259 NA non-coding upstream 135099 60067305 ~ 60127600 (+)
G166122 NA non-coding upstream 389878 59872367 ~ 59872821 (+)
G166121 NA non-coding upstream 391601 59870810 ~ 59871098 (+)
G166381 ptprz1 non-coding downstream 28359 60295751 ~ 60296886 (+)
G166431 NA non-coding downstream 112382 60379774 ~ 60380051 (+)
G166433 NA non-coding downstream 115504 60382896 ~ 60383104 (+)
G166436 NA non-coding downstream 127901 60395293 ~ 60395551 (+)
G166131 lmod2 other upstream 309534 59945708 ~ 59953165 (+)
G163660 LOC106561040 other upstream 2046316 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 2330708 57928150 ~ 57931991 (+)
G162130 NA other upstream 3209057 57048314 ~ 57053642 (+)
G161687 NA other upstream 4010101 56245044 ~ 56252598 (+)
G166878 NA other downstream 248240 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 584040 60851417 ~ 60866455 (+)
G167288 NA other downstream 795201 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 964804 61232196 ~ 61232545 (+)
LOC110510683 LOC106560954 other downstream 1264197 61525283 ~ 61535728 (+)

Expression


Co-expression Network