LOC110501735


Basic Information

Item Value
gene id LOC110501735
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60274384 ~ 60288852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110501735
ATGGCCTGGCGCCCCCTGGAGGAGAATTTAGCAAAGCCGTACAGGCTCCAAGATCGGTGTCACATGGTGAACATTACAATTTCCATCTCGGATTTCAGACATGACCAGAGTCATCAACACCACTTGATAAAGAAAAGCGATGGTGTTTACGACCCCATGGAGTATCACCCGGAAAGTACACATCACACTTCAGAACCAGCGTTGCGTTTTATGGTTGCGCCATCACTTGCTTAATCAACGgttgatttgatttgatctactaGGACCCCCAGACGCCACGGCTCCTGAGGCGGCTGGGCGCCCAGAGGCTCCTGAGGCACGTCAAGCCCTCCGTCACTTCTACCGAGGGATGGCCAGAGCTTCTCCACAAGCTCCTTGCGATTTGTGACATATCTGCTAACATTGTGGGCGCTATTGAGTTCATGACTGAGTGCACCACCATCGATAAGCCTTTCTGGATGTATGATGCGGACCAGCACATAGACCACGACAGTGTGGAGGGCACAGGTATCCTCGTGTTGTATTGATAACCTTCCTGCCCAGCTCCCCATTGAAGCCACTGAATATTTCGGTGACCGCCTCTTTCCCTACATTTGGGAGATGCTGCCCTCGGATGCCACCATGCCCGTTGAAGAAGAGGACTTCTCACCTCAAGTCAGAGATagaaactctataGCTCTCtgggtgaccatcggTATGCTGCCGTATGGGTATCACCCAGTGATCGCCAAGCACTGCATCAACAAGAAGGTGAACATGGTGACTGCCAGCTACCCGAGTCAAGCCATGAAGGACCTTCAACAGAGTGCTGAGGAAGCTGGCATCACCATAGTGAATGGGCCTGGACCCTGGCATCGACCACATGCTGGCTTTGGAGTGCATCGACCAAGCCAAGGCGGACGGCTGCACTattgAGTCATACAGCTCATTCTGTGGTGGACTCCCTGCACTAGAGTGCTCAGACAATCCTCTGCACTACAAATTCAGCTGGAGTCCTTTATGGAGTCCTCCTCAATACCATCAGCCCTGCTATCTTCCTCAAAGACAACAAGGTGGCGAGCATCCTAGTGGAAGGAACTCTGATGGAGTCTACGTCTCCCATGGACTTCATGCCTGGCTTCCACCTGGAGGGTTTCCCCAACCGCGAGAGCAATACAGCCGAGCAATACGGCATCGAGCCGGCCCACACACTCATCAGAGGACCACTCCGCTTCAAGGGTTTCTCCAAGTCCATGAGTGGCTTTGTGTAGCTGGGTCTGATCAACACTGACCCCTCAAtgctctcaAGCTACAATGGAGATTTGACTGACAAgattgaacaaaaacaacaaaaaatccctGTGCAACAGAAAGAGCTGCTGAGTATACAGATGGGCTTGTCCCTGTCTTTCTCTAACCGTGCATTTGAGGGAGCGGTCGACGACATCATTGGCCAAGACGACTTCAAGATGGAGTGGTTCGGGATGCTGAGTAAGGAGGTCGTCCCTCATGCAGACACCCTGCTTCACTGGCTAAGCATTTAGAGGCCCTCCTTTGATAAAGGCGAGCGGGACATGATCATCATGAGGAATGACGTGGGCCTGCGCCACTCCACAGGCGAGCTTGAGACCAAGCACATCAGCCTGGTGGTCTACAGAGACCCCAACGGCTACTCTGCCATAGTAAAAGTGAAGTGAAAACTGCCTTTCAATCTGCAGAAGAAATCTGTATGAAGGGACTGGTGGTGCCAATGACCAAGGACATCTATGGAGTGGCTCAGAAGAGACTGCAGGAGGAGGGCTTACAATTCACTTCAAAAGCACCATCCAAGAGTAGTAACTCACGAATAATCAGCTGCGTCTCAAATAGTGTATATTGATTTCCTTTCCTGGTGTCCTCTCCATCTACACGGATCCAAAAAAGACCCCACACATGAAAAAATACAATTCTATTCAATTCAGTTAAATTATTTCAGAAGAGTGCAGATAAAGAAAAGGAGATTAAGAAAAAAAGCTAGTTTAAACAATTGAGAAATATTTGTAGATTCAACGCCAAGACAGATGGGAAATACAGCCAATCATTGGCTGTCTACCAAGGCCCAGAGAAATCATCTCCATAGTCCCAAGTTACTTCCTCTGTTCATCTCCATGCCTTCATCTGTGCTCATCTGAAAaggcgagagagtgagagatgcaCCCTGACTTTCTGCTTGTTTCAAAGGCATTTCCTCACAGCCTTGTCTTACCTCAACCAATTTATTGTTTCAACACGTGGCGAATATAACAGTTACATTGCAGGTGAACAGTTTCCAAGCAACTTCTTTAAATAAGGCTGTACAATTCATGACATGGAGAACCACAAAACTTGCTGAGTGTCGTTTATAACAT
>TU189562
tttcttcagcaaagatggctgacaaaactaCGTggatggaagcaaatGTTCGGGATGCTGAGTAAGGAGGTCGTCCCTCATGCAGACACCCTGCTTCACTGGCTAAGCATTTAGAGGCCCTCCTTTGATAAAGGCGAGCGGGACATGATCATCATGAGGAATGACGTGGGCCTGCGCCACTCCACAGGCGAGCTTGAGACCAAGCACATCAGCCTGGTGGTCTACAGAGACCCCAACGGCTACTCTGCCATAGTAAAAGTGAAGTGAAAACTGCCTTTCAATCTGCAGAAGAAATCTGTATGAAGGGACTGGTGGTGCCAATGACCAAGGACATCTATGGAGTGGCTCAGAAGAGACTGCAGGAGGAGGGCTTACAATTCACTTCAAAAGCACCATCCAAGAGTAGTAACTCACGAATAATCAGCTGCGTCTCAAATAGTGTATATTGATTTCCTTTCCTGGTGTCCTCTCCATCTACACGGATCCAAAAAAGACCCCACACATGAAAAAATACAATTCTATTCAATTCAGTTAAATTATTTCAGAAGAGTGCAGATAAAGAAAAGGAGATTAAGAAAAAAAGCTAGTTTAAACAATTGAGAAATATTTGTAGATTCAACGCCAAGACAGATGGGAAATACAGCCAATCATTGGCTGTCTACCAAGGCCCAGAGAAATCATCTCCATAGTCCCAAGTTACTTCCTCTGTTCATCTCCATGCCTTCATCTGTGCTCATCTGAAAaggcgagagagtgagagatgcaCCCTGACTTTCTGCTTGTTTCAAAGGCATTTCCTCACAGCCTTGTCTTACCTCAACCAATTTATTGTTTCAACACGTGGCGAATATAACAGTTACATTGCAGGTGAACAGTTTCCAAGCAACTTCTTTAAACatatgcttcccacagttgtgccaaaTTGACtgaatgtcctttgagtggtggaccattcttgatacacacagggaactgttgaggctgaaaaacccagcagcgttgcagttcttgacacaaaccaaccagtgcgcctggcacctactaccatcccACGTTCAAAGACactgaaatattttgtcttgcctattctccctctgaatggcacacagacacaatccatgtctcaaggcttaatttTTTAACCTACTgtatctcctcccctttatctacactgaagtggatttaataagtgacatcagtaagggatcatagcttacatcttgattcacctggtcagtctgtcatggaaagagcagccgtccttaaagttttgtacactcagtgtatatttgtaTTTTAAAACTGCTCAGAGATTATAATGTGGCAtagagtacagttgaagtcagaagtttacaaacacctttgccaaagacatttaaactacatttttcacaattcctgacatttagtcctagtaaaaataccctgttttaggtcagttaggatcaccactttattttcagaatgtgaactgtcagaataatagtagagagaatgatttctttcagatttgatttctttcatcacattcccagtgggtcagaagtttacatacactcaattcgtatttggtagtattgcatttaaatggtttaacttgggtcaaacgtttcgggtagccttccacaagcttcccacaataagttgggtaaattttggcccattcctcctgaccgagctggtgtaactgagtcaggtttgtaggcctccttgctcgctcactgtttcagttctgcccacacattttcgatAAGATTtaatgtgatggccactccaataccttgactttgttgtccttaagccattttgccacagctttggaagtatgctttgggtcgtccatttggaagacccatttgcgaccaagctttaacttcctgactggtatcttgatgttgcttcaatataggggcggtagggtagcctagtggttagagtgttggactagtaaccggaaggttgcaagttcaaatccccgagct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110501735 False 2366 mRNA 0.43 17 60274384 60287624
TU189562 True 1982 lncRNA 0.36 4 60285393 60288852

Neighbor

gene id symbol gene type direction distance location
LOC110492825 fezf1 coding upstream 6992 60262699 ~ 60267392 (+)
LOC110501720 cadps2 coding upstream 23287 59986065 ~ 60251097 (+)
iqub iqub coding upstream 297063 59969706 ~ 59977321 (+)
LOC110501704 wasl coding upstream 351661 59900130 ~ 59922883 (+)
LOC110492759 gpr37 coding upstream 492527 59774163 ~ 59781857 (+)
LOC110492846 LOC106561021 coding downstream 111252 60398876 ~ 60406820 (+)
syt8 LOC106561125 coding downstream 340314 60627938 ~ 60639516 (+)
LOC110492948 LOC106561016 coding downstream 366977 60654601 ~ 60666601 (+)
LOC110492922 LOC106561015 coding downstream 395356 60682980 ~ 60695886 (+)
LOC110492964 LOC106561014 coding downstream 409755 60697379 ~ 60712198 (+)
G166370 NA non-coding upstream 12580 60261578 ~ 60261804 (+)
G166259 NA non-coding upstream 146784 60067305 ~ 60127600 (+)
G166122 NA non-coding upstream 401563 59872367 ~ 59872821 (+)
G166121 NA non-coding upstream 403286 59870810 ~ 59871098 (+)
G166381 ptprz1 non-coding downstream 8127 60295751 ~ 60296886 (+)
G166431 NA non-coding downstream 92150 60379774 ~ 60380051 (+)
G166433 NA non-coding downstream 95272 60382896 ~ 60383104 (+)
G166436 NA non-coding downstream 107669 60395293 ~ 60395551 (+)
G166437 NA non-coding downstream 108010 60395634 ~ 60395870 (+)
G166131 lmod2 other upstream 321219 59945708 ~ 59953165 (+)
G163660 LOC106561040 other upstream 2058001 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 2342393 57928150 ~ 57931991 (+)
G162130 NA other upstream 3220742 57048314 ~ 57053642 (+)
G161687 NA other upstream 4021786 56245044 ~ 56252598 (+)
G166878 NA other downstream 228008 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 563808 60851417 ~ 60866455 (+)
G167288 NA other downstream 774969 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 944572 61232196 ~ 61232545 (+)
LOC110510683 LOC106560954 other downstream 1243965 61525283 ~ 61535728 (+)

Expression


Co-expression Network