LOC110492846 (LOC106561021)


Basic Information

Item Value
gene id LOC110492846
gene name LOC106561021
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60398876 ~ 60406820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567324.2
AGGGAGGCGACAGACAGTATTTGTGTTCCTTGGATTGTTACTGCGCAAGCGCAATTTCGTGAGTCCTTGGATGATCCGCCTGCTGTAGGTTACGCAGCCTGTAAAGGGACACATACAAAATGCAGAGCTGGAATCAAGTATATCGCACTCTGGCAACGCGGAGCCACCAACTCCCGAATCGGCTCCAGGGTGCAACTGTTCTCTCCGTCCGAACATACGCTGACAAAGCACAGATTGATGCTGACGTCACAGTGGTGGGCTCTGGTCCTGGTGGATATGTTGCTGCAATCAAAGCAGCGCAGCTTGGTTTTAAGACGGTGTGTGTGGAAAAGAATCCCACCCTGGGCGGGACTTGTTTGAATGTCGGCTGTATCCCCTCAAAGGCCCTACTGAACAACTCATATCTGTACCACCAGGCCCATGGCAAAGACTTCGAAAGCAGGGGCATTGAAAtcTCAGGGATTACATTGAACCTGGAGAAGATGATGTCACAGAAGAGCGGTGCGGTCAAAGCACTGACAGGAGGCATTGCACATTTATTCAAACAGAACAAGGTGACGCACGTGAACGGCTATGGGAGGATTACAGGCAAGAACCAGGTGACGGCCACGGCCGAGGACGGCAGTGAGCAGGTCATCAACAGCAATAATATCCTCATAGCCACCGGCTCCGAGGTCACGCCCTTCCCCGGGATTGAGGTTGATGAGGACACCGTGGTGTCCTCCACGGGAGCCCTGGATCTGAAGAAGGTCCCTGAGCAGCTCATCGTCATCGGTGCCGGAGTCATTGGGGTGGAGCTGGGGTCAGTGTGGCAGCGTCTGGGCTCCAATGTGACAGCGGTGGAGTTCCTGGGCCACGTGGGCGGCATGGGTATCGACATGGAGATCTCCAAGAACTTCCAGCGCATCCTGCAGAAGCAGGGTATTAAGTTCAAGCTGGGCACTAAGGTCATGGGTGCAATCAAGAGGCCCGACGGCAAGATCGATGTGGCTGTGGAGGCGGCTGCCGGCGGGAAGAACGAGACTCTGACGTGTGACGTGCTGCTGGTGTGTATCGGCAGACGGCCCTTCACCAGGAACCTGGGCCTGGAGAACGTGGGCCTGGAGCTGGACAACAGGGGACGCATACCTGTCAACAACCGCTTCCAGACTAAAGTACCCAGTATCTATGCCATTGGTGATGTGATTGCCGGGCCCATGCTGGCACACAAGGCGGAGGACGAGGGCATCATCTGCGTGGAGGGCATGGCTGGGGGCGGCGTGCACATCGACTACAACTGTGTCCCCTCTGTTGTCTACACACACCCCGAGGTGGCATGGGTGGGGAAGACGGAGGAGCAGCTCAAAGAGGAGGGCATCCCATACAAGGTGGGCAAGTTCCCATTTGCCGCCAACAGTCGAGCCAAGACCAACGCAGACACTGATGGCCTGGTGAAGATCCTCGGCCACAAGGAGACAGACCGGATATTGGGCGCTCACATCCTGGGCTGTGGGGCAGGAGAGATTATCAACGAGGCGACGCTCGCCATGGAGTACGGCGCGTCCTGCGAGGACGTCGCCAGAGTTTGCCACGCCCATCCCaCTGTGTCCGAGGCCTTCAGAGAAGCAAACCTCGCAGCCTCCTTCGGGAAAGCTATTAACTTTTAACTGCCGTCTTCGCTCACACAGCTGTGTACATAACCGTTCTGTCCACGACGTCCCCAAACCAGAAATCTGTCCACAAGCAACGCACACACTCTAGGAGGGGGACACGGAATGTACCGTGACCCCTCAACTCCAATTAAGGGACTCCTCTGTATACATACATAGAAAACAAAGACACACCTTGTATCACATTAAGTATGTCATTTAAACGTTGTCAATAAAGGGGTTTGGGTGGTAAAAATGGACTGGAGATCAAGTCTTTTTGACTTTCTACATTGGTGTCTTGGGTGTTGCACTCAAGGTTTGCTGCTATATCAAATAGCTAACTACatatgtgtgatatatatatgttAGTCGCAGTGTATctagcatttttcaaacaccacTTTCTTATTAGTACAGTGCTCAGAGATGTATATTCATAGGTTGGTATTGGGTGGAATACTGCTGTTTTTAACAATAAGAGATGAGTCATGACTGAATATTTTTAAAGACTGAGGCAAAACTACTTTTCAATCGGAGTAAAGAGGTTGGAAAGTCCAAAGCAGCAACTCGCTTGTATGAATTTCAATACTTATTCAAATATGGCTGTATTGTCTGTGTGTATACTTTCTTGCTTAACTCCGAGCTCCACAAAACCAATAAAATGTAGTAAGGTTTCAA

Function

NR:

description
dihydrolipoyl dehydrogenase, mitochondrial-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0004148 dihydrolipoyl dehydrogenase activity molecular_function

KEGG:

id description
K00382 DLD, lpd, pdhD; dihydrolipoamide dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567324.2 True 2306 mRNA 0.52 14 60398876 60406820

Neighbor

gene id symbol gene type direction distance location
LOC110501735 NA coding upstream 111252 60274384 ~ 60288852 (+)
LOC110492825 fezf1 coding upstream 131484 60262699 ~ 60267392 (+)
LOC110501720 cadps2 coding upstream 147779 59986065 ~ 60251097 (+)
iqub iqub coding upstream 421555 59969706 ~ 59977321 (+)
LOC110501704 wasl coding upstream 476153 59900130 ~ 59922883 (+)
syt8 LOC106561125 coding downstream 221118 60627938 ~ 60639516 (+)
LOC110492948 LOC106561016 coding downstream 247781 60654601 ~ 60666601 (+)
LOC110492922 LOC106561015 coding downstream 276160 60682980 ~ 60695886 (+)
LOC110492964 LOC106561014 coding downstream 290559 60697379 ~ 60712198 (+)
LOC118941118 NA coding downstream 307833 60714653 ~ 60719958 (+)
G166439 NA non-coding upstream 1659 60396986 ~ 60397217 (+)
G166437 NA non-coding upstream 3006 60395634 ~ 60395870 (+)
G166436 NA non-coding upstream 3325 60395293 ~ 60395551 (+)
G166433 NA non-coding upstream 15772 60382896 ~ 60383104 (+)
G166431 NA non-coding upstream 18825 60379774 ~ 60380051 (+)
G166441 NA non-coding downstream 2340 60409160 ~ 60409394 (+)
G166445 NA non-coding downstream 11611 60418431 ~ 60418652 (+)
G166446 LOC106561020 non-coding downstream 15481 60422301 ~ 60423085 (+)
G166451 NA non-coding downstream 23109 60429929 ~ 60430146 (+)
G166458 NA non-coding downstream 30467 60437287 ~ 60437538 (+)
G166131 lmod2 other upstream 445711 59945708 ~ 59953165 (+)
G163660 LOC106561040 other upstream 2182493 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 2466885 57928150 ~ 57931991 (+)
G162130 NA other upstream 3345234 57048314 ~ 57053642 (+)
G161687 NA other upstream 4146278 56245044 ~ 56252598 (+)
G166878 NA other downstream 108812 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 444612 60851417 ~ 60866455 (+)
G167288 NA other downstream 655773 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 825376 61232196 ~ 61232545 (+)
LOC110510683 LOC106560954 other downstream 1124769 61525283 ~ 61535728 (+)

Expression


Co-expression Network