LOC110492857 (LOC106561020)


Basic Information

Item Value
gene id LOC110492857
gene name LOC106561020
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60419131 ~ 60437560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567334.2
TAGTCCGGACTAGCACGTGAACGTGGCATTGTGCCGTATGTTCAGAATAGAACATTGATTCCCAAGCTTTAGCACTGTGGGCAAAATGGCTAAAATGGAGTTGTTGGGATTGATTTTCAACCAGGGATTTAGAGCAGTTCCTGAGCTTTTCCGAGCCGTTGAAAAAACAATAACAGACTACCAAGGAAAAGATTGCCTATCGAAAGAGGAGAACAACCGTCTACAGAAGCTGCTTGATATCCTCCTTAAACCAGAGATACAGTTACATAGAGCAGACCGCAAATGGCTCAATGCCATTGAAGAGGAGGTTCCCCCCGAACAGCAGCACTGTGAGCAGGAAAGGAGCCCCAATCCGGGGAAAGATGACTCCGAGCCCAcacagattaaagaggaacaggTGGCACTCAGGACCAGCCAAAAGCTGGAATACAATACCACTTTTCCCTGTGTGAAAAGTGAGTCTGATGAGTATCCAACTCAGTCCTCACATCTTAACAAAACCCAAAGTAAAGAATGCAAGAACAGAGACTCTTCAACTAAACAGATAAAAACAGAACCTCATGAGGACTCTTCAGAACCAACCAGTGACTCTCAGGCCCTCTCTTTAGTAAATCCAAGCTGTTCTGCATCTCAGAATGAAAACCGTGAAAGTGTTGACGCGAGGTGGAGTGGAGGACATCTGGCGGCTTTAAAGATGTGCAAATCAAAGAGGACACGGACAGAAAAAGAACAAATCCCTGCTTGTTGTAAGGTGTGTGGAAGGTCTTGTCACTCCATGCGTACATTATTGACTCATTTGAAAAGTCATAGAAAAGATGAGGAACAtatttgtggtgtgtgtggaaAAAGATGTCCATCACTAGAACGTGTGAGGGATCACATACAAACTCACATGATGTCCCATCTGAAACCACCTAGTGAATGCCCTGCTGGTTCTAGTTGTAAGGTTTGTGGAAGGCCTTGTCACTCCTTTGGGGCTTTATTGAGACATTTGCGAAGACACAGAAAAGATAAGGAACATATTTGTGGTGTTTGTGGAAAAAGCTGTCAATCCCTAAAAGGTTTGATGGATCACATATTAGAAACTCACAGAACTAGGTTTTGTGAAGTTTGTGGTAAAGGTTTTGACTCTCCTACGGATCTGAAAAATCATATTAGGacccacacaggggagaaacttTTTCCCTGTAATGATTGTGGCAGATGTTTCACTTCGATTGGAACTTTGAATGTCTATATAAGGatggtccacacaggggagaaatcgCATCATTGCCATGAATGTGGAAAATGTTACGCTCTGAGTGGAAATTTAAAAATGCATATGAGGCTTCATACTGGAGAGAAACCGTATCACTGTAATGAATGTGGCAAAACATTTCGCCTTGGCACCTCTCTGAAAATGCATATGAGGACTCACTCAAGGGAGAAGCCTTATCGGTGCCAGGATTGTGGCTATTCATTCTCTCGAAGGGATCACCTGAAAAACCATTGCAGGATTCACACAGGGGAAAAACGTCATCGCTGTCCTGAATGTGCCAAATGCTTCCCTCAGAGAAGTAGTCTGCAAATGCATATGAggattcacacaggggagaaaccccaTCAATGTCATTTTTGTAAGAAATGTTTCACCTATAGCCATCATCTTAGAGGGCATGTGAGAATTCACACCAATGACAAACCATTTCCCTGCCAGGAGTGTGGCCAATGTTTCAGTCAGAGTTCCAATTTGAATCGGCACATAAAGAGACACAGAGGGGAGAAACCACATCATTGCCATGTGTGTGGCAAATCTTCATCTTTCAGTTGAATGTGCATttgagaatacacacaggggagaaactgCATGTGTGTTCTATATGTCCAAAATGCTTCAGTGACAGAGGGGCATTAATTAGTCATCAGAGACTGCACATGGAGGAGAAACCTTTCAAGTGTAGTTATTGTGATAAATGCTTCAGACATAAGCAGAACATGAAAGAACACATGAAGAGAAGGCACAAAAACATGACCGTGCCCTATGTCGGGGAAGGGGATCAAACAGCTGATTGAAAGGCCATTCATCTCCTCTTGGGTGGATAAGATATGACCGAATGAATGCTTGAACTATGAGAACATTGCTATCTAACTGGCCTGCGTCACCAGACACGCTACGTTTTCAGAGCGTGATACGCTCTTATTAGTGTAAATGAAACCAGATGTAAGCGTGCCGGCTTTGCGAGAGGAGTCCCTGCTCATAGTTTGACACACATTTGAGCTGCAGAACTGTATCCGTAATTAACTTAGTTTGTTGTCGATAAGAGCTTTGTTCAGTAAGCAtacgtttattttttttacccatcggAGAACAAAAGTAACTTTGTTTAACGTTGTAGTTTTTAGAGCTTTTTTGTTAgatacatggtacttttatacaCAGTGGTTTGATTATACACATTACATATTGGATAGATAGTACTCAGACATCTATATAGTGTTTTCCTTATTTACTTACCAATCATGAGCTGTATAATCCCACCCCTCTGCTGCTCTCAActcatcccacctatctccgtaGACCATCCTCTTTTGATTTCCACGtgccatatatatttttaactgtgctggGATGTCTTACATTAATTTTCAACCTTTCTAATCGTATAGCATCCACCGATTTGTAAGTTAATGATGACATTTTGTCCTAtgagtattatattatattgctgGTTATGGTTTTCCAAGTCacccaacactgctatttgtagGGTTATATTTTAAATGAATGTTGggattttttttaaccattcctgaatctgtgaccagaaa
>TU190063
GCTTTGCGAGAGGAGTCCCTGCTCATAGTTTGACACACATTTGAGCTGCAGAACTGTATCCGTAATTAACTTAGTTTGTTGTCGATAAGAGCTTTGTTCAGTAAGCAtacgtttattttttttacccatcggAGAACAAAAGTAACTTTGTTTAACGTTGTAGTTTTTAGAGCTTTTTTGTTAgatacatggtacttttatacaCAGTGGTTTGATTATACACATTACATATTGGATAGATAGTACTCAGACATCTATATAGTGTTTTCCTTATTTACTTACCAATCATGAGCTGTATAATCCCACCCCTCTGCTGCTCTCAActcatcccacctatctccgtaGACCATCCTCTTTTGATTTCCACGtgccatatatatttttaactgtgctggGATGTCTTACATTAATTTTCAACCTTTCTAATCGTATAGCATCCACCGATTTGTAAGTTAATGATGACATTTTGTCCTAtgagtattatattatattgctgGTTATGGTTTTCCAAGTCacccaacactgctatttgtagGGTTATATTTTAAATGAATGTTGggattttttttaaccattcctgaatctgtgaccagaaacaagctacatgcGGACATTCCAGAATAAATTATGTAATGATTGTTTCTTCGTGTAAAAAAAATATgcagagctgagattgttgttttgccttgcaaaagtatacCCCTTTGATTTCTCCATATTTTGTGTTATTTACAGTCAGGTTAAAATTTATTTAATTATAATTTTCTTTCAACAATCTacttaatgtcaaagtggaagaaaaggtatatattttttaagattaATACAAATTAgctaagtattcagcccctttgtttagagaagcctaaattagttcaggagtaaaatttggcttaacaaatcacataaattccatggactcactctgagtccaggggtgtgtgcttactCTCcagtactccttgttcacccacgactgcgtggccacccactactccaacaccatcatcaagttttctgacgacacgacggtggtaggcctgatcagcgACTGCAATGaatcagcctatagggaggtggtcagagacgtAGCAGTGTggtaacaggacaacaaccttcccttcaatgtcagtaagaccaaggaacTGATCTTGGACTATAGGAGAAAGGGGAGAGCATGccactatccacatcgacggggctgttgtGGAGTGGGTtgtgagcttcaagttccttggcgtccacatcactaaggactgaacatggtccacacacacctgcacagttgtgaagagggcacggcaccGCCTCTTCACCCTCAGGAGGCAGAAAATATTTGGTATGGGCCCCTCGGATCCtcaacgttctacagctgcaccattgagagctgaCTGGCTACATCACctcttggtatggcaaatgcaccgccCTTGACCGCAACGCGTTAGAGGGTGGTGCGgatagcccagtacatcactggggttgaGCTCCCTGGCAACCATGACCTCTAtattaggcggtgtcagagaaagggcCAAAAAACTGCcaaagacaccagccacccaagccatagactgttcactctgctaccgtccAGCAAACAGTACCAGAGCATCGGCTCTGGGACCAACAGGCTCTGAGACAGCCTCTACCTCCAACCCATAAGACCGCTAATTAGCCATACTGCTAAGTAATCAATTGAATGGTACCCAAACTATCTTGCATTGACCCTACGCACACTCactatgtcacaccctgaccatagagcgcccttgtttctctatggtgtagtaggtcagggcgtgacgagggggtgttctagtttaacatttctatgttggtgttttgctctaattggggctCATGTTTATGTagctatttttcccacctgtgtttgtgggatattattttgtgtttgtgcatgtgcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567334.2 False 2811 mRNA 0.42 2 60420501 60437560
TU190063 True 1929 lncRNA 0.42 2 60419131 60421096

Neighbor

gene id symbol gene type direction distance location
ptprz1a ptprz1 coding downstream 47859 60293012 ~ 60372642 (-)
LOC110492814 asb15 coding downstream 457352 59951992 ~ 59963149 (-)
LOC110492804 lmod2 coding downstream 471908 59936921 ~ 59948593 (-)
LOC110492793 LOC106561028 coding downstream 534787 59872917 ~ 59885714 (-)
LOC110492782 LOC106561029 coding downstream 578887 59826624 ~ 59841614 (-)
ppp1r3ab LOC106561019 coding upstream 11318 60448878 ~ 60470558 (-)
LOC110492890 LOC106561126 coding upstream 100059 60537619 ~ 60559746 (-)
LOC110492911 LOC106561018 coding upstream 187582 60625142 ~ 60627473 (-)
LOC110493006 LOC106561012 coding upstream 397597 60835157 ~ 60850563 (-)
LOC110493125 myod1c coding upstream 443836 60881396 ~ 60883242 (-)
G166800 NA non-coding downstream 11221 60409053 ~ 60409280 (-)
G166798 NA non-coding downstream 12259 60407913 ~ 60408242 (-)
G166790 NA non-coding downstream 37973 60382240 ~ 60382528 (-)
G166752 NA non-coding downstream 145523 60274737 ~ 60274978 (-)
G166750 NA non-coding downstream 146851 60273392 ~ 60273650 (-)
G166828 NA non-coding upstream 22929 60460489 ~ 60460705 (-)
G166831 NA non-coding upstream 24830 60462390 ~ 60464012 (-)
G166835 NA non-coding upstream 28591 60466151 ~ 60466539 (-)
G166836 NA non-coding upstream 29046 60466606 ~ 60466830 (-)
G166851 NA non-coding upstream 50421 60487981 ~ 60488195 (-)
G166794 LOC106561021 other downstream 13693 60402348 ~ 60406808 (-)
G166541 NA other downstream 500171 59919878 ~ 59920330 (-)
G165746 NA other downstream 932661 59487461 ~ 59487840 (-)
G165742 NA other downstream 938187 59481957 ~ 59482314 (-)
G166877 LOC106613263 other upstream 77666 60515226 ~ 60515522 (-)
G167723 NA other upstream 241163 60678723 ~ 60679041 (-)
G167706 LOC106561017 other upstream 298411 60695263 ~ 60740351 (-)
G167866 NA other upstream 537202 60974762 ~ 60975021 (-)

Expression


Co-expression Network