LOC110492890 (LOC106561126)


Basic Information

Item Value
gene id LOC110492890
gene name LOC106561126
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60537619 ~ 60559746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567361.2
CAACAAGGCGTCTCAACAGAGTTTTCAGTGATGAAGACTTCGAGATGGCAAAAGAAACCCATCCTGTATACCTATTTGAAGAGATGCCTACATGAAAATCCCTTTCAAGACTGCTGCTTTCTCTCGGACCTGCCGTGATTGAACTTCATCTTCTTCTATtaggagaaagggagagtggaTCTTTTTAGGTGCAAGAGCGGCTGTCTGCAGAAATGCCAGCCAACCTCACCGTCTCAAACAACACCGTGCTAGTTCTGGGTGCCGAAATTAACACCGCACAAACCCAGGACACCGACTATAACTTCCCTGCTCTGATATTCGGAATATTGCTAATTGTGGTCATCATTTGTGGAAATTTGCTTGTGTGCCTTAGCGTGTACAGGGAAAAAGCTTTGAAAACTACAACCAACTACTTCATAGTCAGTCTGGCTGTGGCTGATTTGATGTTGGCAGTTTTGGTTTTGCCACTGTTTATATATGTTGAGTTCCAGGGTGGTCTGTGGTCACTGAACATGCATGTCTGCGACGGCCTGATGACAATGGACGTGATGCTGTGTACGGCCTCCATATTCAACCTCTGCGCCATCAGCATCGACAGGTTCATCGCTGTCTCCATTCCACTCAACTACAACCTTAAGCATGTTGATCAGAGACAGATCTTCCTGCTCTCCGCCACGTGGATCCTGGCCTTGGCAGTGGCCTCACCCGTCATGTTTGGCATCCAAAACGTCCCGCAGCGGGACTCTACAGAGTGTAAACTGGAGGACGACAACTTTGTGGTCTACTCCTCTGTCTGCTCTTTCTTCATTCCCTGTCCCATCATGCTCCTCCTCTACTGCGGCATGTTCCGGGGattgaggaggtgggaggaggcaCGCAAGGCCAAGCTGAGGAGCAGCATCCTGGTCTGTAGGAAGTTCCAGGACGCAACTGCCTCACTGCCCCCGCTGGactccctgcctcctcctctacccccaatTATCAAGAGGAAGGAGCTCACAGACATGAAGCCAGAGCTAAAGGATATTAATCTGGAAGAGCTGGACCCTTACCCCCTAGATTCTCCAGACGGCCCCTATAATAACTCCTCACCAGACACACCAGACCGCCCCTATAACAACTCGTTAACAACTACAGAGTACAAGGACGGCCCTGTGCCCACCGTGGTGGCCTACTCTAACATTGGGTACAACCTCCACCCCCAAACCGACCCTCACCAGAAGAAGAGGGCCAAGATTAATTGCCGAGAGAGGAAGGCCATGAAGGTGCTTCCTGTCGTTGTGGGTGCCTTCCTGTTCTGCTGGACCCCGTTCTTCGTGGTCCACACCATGCGGGCCCTGTGTGCCACCTGTTACATCCCCCCATGGCTGATGAGCATCGTCACCTGGCTGGGCTACGTCAACAGCGCCCTCAACCCCATCATCTACACAGTTTTCAACACAGAGTTCAGGAACTACTTCAATAAATTCCTCCACAGCTGCTGTATATACCGATAGACAAGATGAGCacaactagcctggtcccagatttgtcATCATGACAAggaactcctatggtcattgtcatttCTATTGTCGTTGTAACTCATATGGTCATTGACAACACAgcaaaaacagatctgggaccaggctgagGCACCACCGCTGATGAATGGACAAAAAAAGCACAATGAACAATACCATTGTAAGATGTTACGATATCAAATGTGTGCTTTGCTGTACAGAAAATCTTGCGATTGCATATTTTTCTCCCACttgggattttatttttttctgttgATAAATGCTTGTGATTTATCCTATTGTGACAGCAATGTTGTTTGTCAGCTTACCATATGTTGTTTCCATGTTTTATGTGGAAAGCTTTGTGGTAAGGAATTGCATTGAATCCCTCCAACTAAAAAAGGTGCTAAGAAATACCAGCAAGGCATCAATTTCTTAGATTATTAGTGGTAATTAAATTGTATCTTTAAGATTACTTATTTTTCTCACTTAAATTAGGACTTCTGTCCCTAAACTGTGTGGACATTAAGGACCGGGGTTAGAACACTGCGTCAttgacaaaaataaaaataaaacacttcTCCACACAACCATGATTATACTGCAAATCCTAATCCAACTCCTGACTGAGTCTGACAAAGATCCCCACAACAAAATTAAACCTCATCCAAAAATATCCCTCTCGCCCATACGGAAATTGAGGCTTTTGACAAACGGACAAAGTGATTAAAAAAAAGGGCTAAATAACAAATACAGTTTCCACTCTGTTGCCTAGCAGCACAAATCATGTATCCAAtacaagaaaaaaaaacaacaacaagagtTTCATGGTTCAAATCCAAGGAGAAAGCTTTAAGAGGGAGGATGAAATATGATGGAGCAATTTCAGACACCATCTGCTTGCAATGTGACAAGTATTGACAGAGTAATTTACATTCGCAAACTTCTCCCCCAGGATGATTGGTCCATCAGCCACATGTGGGGGACAGAGGTTAGCCTAGCAACAACAACAGGTGGAGAAAGAATTAAAAACATTAGACCTATTTCAAATCAGGGCAGTGAAAACTAGCTCTGCAGCATTTATGAGCTAACATAAATGTCAAATGCAATTCAGGGCATTTAGAGGAGTGACTGGAAATGGTAATCACCCTGTGTATCTATGACTCAGATTACATCATGGGTGTGTGAGTTGGAAGATTTAATGTCAGTCCTTCCATAAACGTTGTTTTTCCACAAACCCCCTTATGACAAGTCTCCCTTACACTATGACCCAAATGAGTTAAGAtattctccttcagtctcctcCAAGACATCAGACGCAAATTATATTCAAAGATATTCAAGTCTATCTCAACTAGGAGAATGGAGATGGCCGTTCTAGAGTTGTTtcaaggacaggagagacagcCGAGTGGAAACGTACTTTGGGTCCACTTTGGATAGGACTGCTGTAAAATGTGATTATGGAGGTGAAATTGTGAAGGTGGATGGACAGACAAGAAAGAGGGATGCATGTCTCTCCCAAGCCAATGCCTTTATGTAGATCTGAGAGTGTCATCTCTCATTACAGTCAGAAACCCACAAAGTATTGGACTGTCTGTCAATAGATGGCCCTTGACAACTCCTCTAACTCCCTCCCCGTGATCCAAAGTAACTACTGGAGTGGGGGTGATTGTTTATGTCAGCAATGTAGAGGGAAGCTTCTCTCAAAataaacaaggcaacagtaaacatgtagtCCCCCATGAATGATGCAGCGCAAGGGCTTGACATTAAGGTAAATTTGCCAGTGGCACACTTCGCCAGTAACAAGTGAAAATGACTGGCCCGAATGAGACATTTCTGTCCCAGGCCAAGATCACAGGAAAGCAAGTTAAGCTAGCAGAGTTTCAATTGTAGGTGATTTCATGTTTCATTTGCAGTCTGGGCAAGTACCTTATAGCCAACCATAAAATCTGATATTTACACTGATTGTTTGGAAAACAAATATAAAACCATCCCCCTTTCAATGATGACATATAGCCTATATTAAATCTTTAAAATGAAATATTCCCCTTCAGAAATTTGTCCAATAACATATTGATGAAAAGCAATATTATCAGACAAGTGTGTTATTTTAGCAAAAAGCATTATCACCCTTCTGATGCAGCATCGTGACTACATggctgaagcatggggttgcTTCTCTGTATTGTCTACCACAATGGGTTAATCATTAGCTAGATCACAGACTCTAAATATGATCTTGTCGCTTGTTAAATGTCCTAAAAAAAGAACTTGCGCAGGCACTAATAAAATCACGTGATTTTTACAGTGTTTATAACTACAGTGTAATTGTGTGAATTTTACAGTGAATATAGGCCTACCGTTTATGCATTCAAATGACTGGTGCGCTTCCCGCCGCTACTTTTATGTTGTCATGCCAGACAATCAAGATTGTAAAACGCTGCCAATTGCTCAAAAAATgtaagttgagaaataaataa
>TU190176
TTTAAGAGGGAGGATGAAATATGATGGAGCAATTTCAGACACCATCTGCTTGCAATGTGACAAGTATTGACAGAGTAATTTACATTCGCAAACTTCTCCCCCAGGATGATTGGTCCATCAGCCACATGTGGGGGACAGAGGTTAGCCTAGCAACAACAACAGGTGGAGAAAGAATTAAAAACATTAGACCTATTTCAAATCAGGGCAGTGAAAACTAGCTCTGCAGCATTTATGAGCTAACATAAATGTCAAATGCAATTCAGGGCATTTAGAGGAGTGACTGGAAATGGTAATCACCCTGTGTATCTATGACTCAGATTACATCATGGGTGTGTGAGTTGGAAGATTTAATGTCAGTCCTTCCATAAACGTTGTTTTTCCACAAACCCCCTTATGACAAGTCTCCCTTACACTATGACCCAAATGAGTTAAGAtattctccttcagtctcctcCAAGACATCAGACGCAAATTATATTCAAAGATATTCAAGTCTATCTCAACTAGGAGAATGGAGATGGCCGTTCTAGAGTTGTTtcaaggacaggagagacagcCGAGTGGAAACGTACTTTGGGTCCACTTTGGATAGGACTGCTG
>TU190177
tgggaggaggcaCGCAAGGCCAAGCTGAGGAGCAGCATCCTGGTCTGTAGGAAGTTCCAGGACGCAACTGCCTCACTGCCCCCGCTGGactccctgcctcctcctctacccccaatTATCAAGAGGAAGGAGCTCACAGACATGAAGCCAGAGCTAAAGGATATTAATCTGGAAGAGCTGGACCCTTACCCCCTAGATTCTCCAGACGGCCCCTATAATAACTCCTCACCAGACACACCAGACCGCCCCTATAACAACTCGTTAACAACTACAGAGTACAAGGACGGCCCTGTGCCCACCGTGGTGGCCTACTCTAACATTGGGTACAACCTCCACCCCCAAACCGACCCTCACCAGAAGAAGAGGGCCAAGATTAATTGCCGAGAGAGGAAGGCCATGAAGGTGCTTCCTGTCGTTGTGGGTGCCTTCCTGTTCTGCTGGACCCCGTTCTTCGTGGTCCACACCATGCGGGCCCTGTGTGCCACCTGTTACATCCCCCCATGGCTGATGAGCATCGTCACCTGGCTGGGCTACGTCAACAGCGCCCTCAACCCC

Function

NR:

description
D(4) dopamine receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567361.2 False 3988 mRNA 0.43 4 60537619 60559746
TU190176 False 600 lncRNA 0.42 1 60538654 60539253
TU190177 True 555 TUCP 0.57 2 60540189 60549179

Neighbor

gene id symbol gene type direction distance location
ppp1r3ab LOC106561019 coding downstream 67061 60448878 ~ 60470558 (-)
LOC110492857 LOC106561020 coding downstream 100059 60419131 ~ 60437560 (-)
ptprz1a ptprz1 coding downstream 164977 60293012 ~ 60372642 (-)
LOC110492814 asb15 coding downstream 574470 59951992 ~ 59963149 (-)
LOC110492804 lmod2 coding downstream 589026 59936921 ~ 59948593 (-)
LOC110492911 LOC106561018 coding upstream 65396 60625142 ~ 60627473 (-)
LOC110493006 LOC106561012 coding upstream 275411 60835157 ~ 60850563 (-)
LOC110493125 myod1c coding upstream 321650 60881396 ~ 60883242 (-)
zgc:172145 LOC106561011 coding upstream 329047 60888793 ~ 60899520 (-)
LOC110493151 LOC106561010 coding upstream 484507 61044253 ~ 61059973 (-)
G166889 NA non-coding downstream 13705 60523708 ~ 60523914 (-)
G166882 NA non-coding downstream 19881 60517538 ~ 60517738 (-)
G166860 NA non-coding downstream 37419 60499988 ~ 60500200 (-)
G166855 NA non-coding downstream 45173 60492198 ~ 60492446 (-)
G166854 NA non-coding downstream 47408 60489887 ~ 60490211 (-)
G166944 NA non-coding upstream 6364 60566110 ~ 60566410 (-)
G166946 NA non-coding upstream 7098 60566844 ~ 60567189 (-)
G166952 NA non-coding upstream 9236 60568982 ~ 60569187 (-)
G166980 NA non-coding upstream 28077 60587823 ~ 60588047 (-)
G167006 NA non-coding upstream 46525 60606271 ~ 60606672 (-)
G166877 LOC106613263 other downstream 22097 60515226 ~ 60515522 (-)
G166794 LOC106561021 other downstream 130811 60402348 ~ 60406808 (-)
G166541 NA other downstream 617289 59919878 ~ 59920330 (-)
LOC110492782 LOC106561029 other downstream 707604 59826624 ~ 59841614 (-)
G165746 NA other downstream 1049779 59487461 ~ 59487840 (-)
G167723 NA other upstream 118977 60678723 ~ 60679041 (-)
G167706 LOC106561017 other upstream 176225 60695263 ~ 60740351 (-)
G167866 NA other upstream 415016 60974762 ~ 60975021 (-)
G168021 NA other upstream 694766 61254512 ~ 61256015 (-)
LOC110493186 mlkl other upstream 731393 61290149 ~ 61303507 (-)
G166931 NA non-coding upstream 15243 60554496 ~ 60554712 (-)
G166935 NA non-coding upstream 19308 60558561 ~ 60558811 (-)
LOC110492890 LOC106561126 other upstream 936 60537619 ~ 60559746 (-)

Expression


Co-expression Network