syt8 (LOC106561125)


Basic Information

Item Value
gene id syt8
gene name LOC106561125
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60627938 ~ 60639516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934029.1
ATGCGTGccctcactctggatgaactgcagagctctacaactgagGTCCAACCTGACTCGGATGATGCAAACTACGGCACAGCTAAAAACCGTGGAAGACTACTCTACTCTCTGGAATACAAGGCACAAGAGCTGACAGTGGGGATTAAACAGGCTGCAGCACTGCCAGCTATGGACCTGGGAGGCACCTCTGACCCCTATGTTAAAGTCTACATCACCCCCAACAAGTCAAAGACATTCGAGACTAAGGTCTACAGGAAAACCCTTAACCCCATTTTCAATGAACACTTCACATTTGAGATTGACAAAGCTGAGCTCAATGAGTCCACCCTAGTCATGAAGGTGTTCGACTTCGATAGGTTCTCCAAACATGACATCATCGGGGAGCTGAGGCTGCAGCTCGGAACCATCGACTGGAATCATGTGATCGAGGAGTGGAAAAACCTTAGTGACCCCTCCAAGTCTGAGGATATCATTCTGGGGGAGATCTGCTTCTCATTGCGTTACGTCCCGACCACCAGCAAACTGACTGTTGTCATCCTGGAAGCCAAGAACCTAAAGAGTATGGATTAAGGGGGCTCATCAGATCCCTATGTAAAAGTACAGCTAGCTCTGGACAAGAAGAAGTGGAAGAGAAAGAAGACATCTGTTAAAAAGTGCACACAAAATCCCTACTTCAACGAATCTTTTACATTTGTGGTGTCATTTGAACAAATTCAAAGGCTTCAGCTGGTGATTTCCGTGTGGGACCATGACAAGTTTACCAGGAACGATGCTATTGGGAAGATCTTCCTGGGTTGTGATGCTACAGGGAACCAGCAGAGGCACTGGGCAGACATGCTGTCCAACCCCCGTAAACCTGTGGCCCAGTGGCACAACCTGTTTTCCAGtgaacaggtggactccattctCGAACTCAAACACTCAGTCAGGATCCCCTTCATTAATAAGAACTTTTGAGAAAACTTAGACTTGCTTGCCAGACTCATGGCACTCCAGCGACTGTGGGAAGAGGCTAGAAATAACCTACTTCACGTCCTCTACTTCACTTAGCTAATAGCAGCTTGGAGGCTCGAGCACTTTTAAATGCTGATAAAATATTCCAATATGCATGCCGGATTTAAATAGTTGCAATTTTTATAGACATGTTATGAAATACATACGTGATACGTCCAGTTAAGAATAGGAAAATAATCTATTTTCTATGTAGCCCATTGTTTATTGGTTTTATACTCAAGTTGAATATAGCATTACAGTCAAACCTAAATGCTGCACAGACAGTATGACTAGCATACAAAAAGACTCCATGGCCTGGGAGAGCATACtgtaggcccacccacttgggagcgaGGTACACACACTGGGaagtcaggcccagccaatcagatttgtttttcccaacaaaagggctttattattcatcagctgtcctggtggctggtctccaatgatcccgcaggtaaagaagccgaatgtatggaggtcctgggctggagcgttacacgtggtctgcggttgtgaggccagttgaatGTACCGCCAAATCTTtgaaaacaacgttggaggcgacttatggtagagaaatttacATCAaattctggtggacattcctgcagtcagcatgccaattgcacgctccctcaaatgttgtggcattgtgttgtgtgacaaaactgcacattctaGAATGGCCTTttcttgtccccagcacaaggtgcagctgtttaatcagcttcttgatgtgccacacttgtcaggtagatggattatcttggcaaaggagaaattatcaccaacagggatgtaaacacatgtgtgcacaaaatttgagagaaataagctttttgtgcatatagaacatttctgggatcttttatttcagctcatgaaacaacagacaaatactttacatgttgtatGTATACTCTTAATTGATGGAAATATGCAATAAATCCATGTATGGCTTCTCATTTCCA

Function

NR:

description
synaptotagmin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934029.1 True 1976 mRNA 0.44 8 60627938 60639516

Neighbor

gene id symbol gene type direction distance location
LOC110492846 LOC106561021 coding upstream 221118 60398876 ~ 60406820 (+)
LOC110501735 NA coding upstream 340314 60274384 ~ 60288852 (+)
LOC110492825 fezf1 coding upstream 360546 60262699 ~ 60267392 (+)
LOC110501720 cadps2 coding upstream 376841 59986065 ~ 60251097 (+)
iqub iqub coding upstream 650617 59969706 ~ 59977321 (+)
LOC110492948 LOC106561016 coding downstream 15085 60654601 ~ 60666601 (+)
LOC110492922 LOC106561015 coding downstream 43464 60682980 ~ 60695886 (+)
LOC110492964 LOC106561014 coding downstream 57863 60697379 ~ 60712198 (+)
LOC118941118 NA coding downstream 75137 60714653 ~ 60719958 (+)
LOC100170211 LOC100170211 coding downstream 86074 60725590 ~ 60734031 (+)
G167025 NA non-coding upstream 9886 60617769 ~ 60618052 (+)
G166991 NA non-coding upstream 22076 60605591 ~ 60605862 (+)
G166907 NA non-coding upstream 78381 60549349 ~ 60549557 (+)
G166900 NA non-coding upstream 89460 60537821 ~ 60538478 (+)
G166899 NA non-coding upstream 90421 60537221 ~ 60537517 (+)
G167059 NA non-coding downstream 29996 60669512 ~ 60669713 (+)
G167137 NA non-coding downstream 160931 60800447 ~ 60829029 (+)
G167154 NA non-coding downstream 202145 60841661 ~ 60891125 (+)
G167164 NA non-coding downstream 217076 60856592 ~ 60907513 (+)
G167198 NA non-coding downstream 281600 60921116 ~ 60921322 (+)
G166878 NA other upstream 112058 60515632 ~ 60515880 (+)
G166131 lmod2 other upstream 674773 59945708 ~ 59953165 (+)
G163660 LOC106561040 other upstream 2411555 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 2695947 57928150 ~ 57931991 (+)
G162130 NA other upstream 3574296 57048314 ~ 57053642 (+)
LOC110493059 LOC100194658 other downstream 211916 60851417 ~ 60866455 (+)
G167288 NA other downstream 423077 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 592680 61232196 ~ 61232545 (+)
LOC110510683 LOC106560954 other downstream 892073 61525283 ~ 61535728 (+)
G167609 LOC106560954 other downstream 1087443 61726959 ~ 61727454 (+)

Expression


Co-expression Network