LOC110492964 (LOC106561014)


Basic Information

Item Value
gene id LOC110492964
gene name LOC106561014
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60697379 ~ 60712198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567378.2
CAGTTGCCTGTCCCAGTCCCAAGCGTGCGTCCTGCTTGATCGCCAGCTCTCTCTAATAGACCCCTTTGGAAAGTTACAAGAGTCCAAGATGTCTGAGAAAAAAATGTCATCGAGTCGCAAGCATCATCTGAAGagcGTGATGCTCCAGATTGCTAAGGACTTGCTGGAGGCAGAGGCCATAGAGGCAGTGGAAGAGAAAAAAAGGTACATGGATGAGACCTGCCCCGCATTGGACCTGCCTGGGTCGTTGGTGGAACTGCAGGAAATGTGCAAGACAATCCATCACCAGCTTGATAAAGTGGATGAGGAGAGATACGACCTGGCAGGCAAAGTGGGCAAGTGTGACAAAGAGATTGATGATTTGAGGATTAAAGTGGTTGAGATCCAGGGCATTAAGAAGCCAGCTCTGAAGAAAGTGCGTATGTCTGCTGATGCTATGCTCCAGGCTTTGTTGGGCTCCAAGCACAAGGTGACCATGGATCTGAGATCCAATCTGAAACAAGTGAAGAAGGAAGTCAAAGAGGATGACAAAGACACAGTTGGTGACTGGCGTAAGAACATTGACGACAAGGCCGGCATGGACGGCAGGAAGAAGATGTTTGAGGCCGCATAAACGCTATGGCAAGACCATTTCCCCCTGCTTTTCTCTGTGTCTTAATAAATCAGTTGGTAGCCATGGCCGTCTTTTGTGTTGGATATATAAGGTGGTATTGTGGTTAAGTCTCAGGTGGATTTGTATCAATTTCACTGCTTCCTTTTTGTCTGTATACCCCAGACCCAGGTAATTACCTCACAGCAACTTGAACACATTTTGAAAGGCACTTATTGTATATGAAATAAATATTTCAACACTTACAACTGGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567378.2 True 864 mRNA 0.46 7 60697379 60712198

Neighbor

gene id symbol gene type direction distance location
LOC110492922 LOC106561015 coding upstream 1493 60682980 ~ 60695886 (+)
LOC110492948 LOC106561016 coding upstream 30778 60654601 ~ 60666601 (+)
syt8 LOC106561125 coding upstream 57863 60627938 ~ 60639516 (+)
LOC110492846 LOC106561021 coding upstream 290559 60398876 ~ 60406820 (+)
LOC110501735 NA coding upstream 409755 60274384 ~ 60288852 (+)
LOC118941118 NA coding downstream 2455 60714653 ~ 60719958 (+)
LOC100170211 LOC100170211 coding downstream 13392 60725590 ~ 60734031 (+)
LOC110492990 LOC106561017 coding downstream 22927 60735125 ~ 60740362 (+)
LOC110493043 LOC106561013 coding downstream 69517 60781715 ~ 60846975 (+)
LOC110493059 LOC100194658 coding downstream 139219 60851417 ~ 60866455 (+)
G167059 NA non-coding upstream 27666 60669512 ~ 60669713 (+)
G167025 NA non-coding upstream 79327 60617769 ~ 60618052 (+)
G166991 NA non-coding upstream 91517 60605591 ~ 60605862 (+)
G166907 NA non-coding upstream 147822 60549349 ~ 60549557 (+)
G166900 NA non-coding upstream 158901 60537821 ~ 60538478 (+)
G167137 NA non-coding downstream 88249 60800447 ~ 60829029 (+)
G167154 NA non-coding downstream 129463 60841661 ~ 60891125 (+)
G167164 NA non-coding downstream 144394 60856592 ~ 60907513 (+)
G167198 NA non-coding downstream 208918 60921116 ~ 60921322 (+)
G167204 NA non-coding downstream 224055 60936253 ~ 60936489 (+)
G166878 NA other upstream 181499 60515632 ~ 60515880 (+)
G166131 lmod2 other upstream 744214 59945708 ~ 59953165 (+)
G163660 LOC106561040 other upstream 2480996 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 2765388 57928150 ~ 57931991 (+)
G162130 NA other upstream 3643737 57048314 ~ 57053642 (+)
G167288 NA other downstream 350395 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 519998 61232196 ~ 61232545 (+)
LOC110510683 LOC106560954 other downstream 819391 61525283 ~ 61535728 (+)
G167609 LOC106560954 other downstream 1014761 61726959 ~ 61727454 (+)

Expression


Co-expression Network