LOC110493125 (myod1c)


Basic Information

Item Value
gene id LOC110493125
gene name myod1c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60881396 ~ 60883242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567392.2
GTTTGTAACAAATACAGAGCCAGGAGAACAACAGTTACAAAGTTGGTCTTGGCATTTGACACTGAGATAGAGATGGAGTTGTCGGATATTTCGTTCCCTATCACCTCCGCTGATGACTTTTATGACGACCCGTGCTTCAACACCAGCGACATGCATTTTTTCGAAGACATGGACCCCCGGTTAGTCCATGTTGGTCTCCTCAAGCCCGACGACCATCATCATAACGAAGACGAGCACATCAGGGCCCCAAGCGGGCACCACCAAGCCGGTAGGTGCCTCCTCTGGGCATGCAAAGCCTGCAAGAGGAAAACCACCAACACCGACCGGAGGAAGGCTGCTACCatgcgggagaggaggagactgggcAAGGTCAACGACGCCTTCGAGAACCTGAAGAGATGTACGTCGAACAACCCCAATCAGAGGCTTCCAAAGGTGGAGATCCTGAGAAATGCCATCAGCTACATCGAGTCTCTGCAGTCTCTGCTCAGGGGCCAGGACGGCGAAAACTACTACCCTTCGCTGGAGCACTACAACGGGGACTCTGACGCATCCAGCCCACGGTCCAACTGCTCTGATGGAATGATGGACTATAATGCCCCGACGTGCACGTCCGCAAGACGAAGCAGCTATGAAAGCTCTTATTTTGCGGAGACTCCAAATGCTGATGCCAGAAGCAAAAAGAACGCAGTCATCTCCAGCTTGGATTGTCTATCCAGCATCGTGGAGAGAATCTCAACAGACACGTCCGCGTGCACTATGTTATCAGTTCAGGAGGGTAGCCCCTGCTCTCCCCAAGAGGGATCTATCCTGAGCGAGACAGGGGCAACCGTGCCGTCGCCGACCAAGTGCCCACAGCCCTCCCATGACCCCATCTACCAAGTGCTATGAAAAGACAGTGATAGTAAATGGCTACATTCATGAAAATGAATCCATTCATGTAAATGAAGAAAACAACGAACGGACAGGGTTGCAGAATGTGGCTGTACTATAAGAATATGATGGCAAAGTTGCCTTTCCTTCCTTTAATAGAACGTTTTAAATTCTTTGAAATTCAATCATTGGCATCCCATGGGTCACGTTTTATAAGAAATAATTTACCGATTTATTTATGTACATGTAATCGTATATGAAATATTTGACCACTTTCTTTCCCTTGCCATTTTAATTGTTTATGACAATAGAGGACCATTTTTGTATAGGTCTATGTGTAAATAAGAGGTGAAACGAAAAAAAGgtttttaatgtatttaatgttgcctgtttatattcaggtgcgcgTGGTTGGTTTGTTGTGAGAAATGTTTAACTTTATATTTATACATCTTAAAATTTGTGAAAGTCGTTCGATGTTATTATAAATAAATGACTATGGCTATTTATACAAAA

Function

NR:

description
myoblast determination protein 1 homolog 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09064 MYOD1, MYF3; myogenic factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567392.2 True 1389 mRNA 0.45 3 60881396 60883242

Neighbor

gene id symbol gene type direction distance location
LOC110493006 LOC106561012 coding downstream 30833 60835157 ~ 60850563 (-)
LOC110492911 LOC106561018 coding downstream 253923 60625142 ~ 60627473 (-)
LOC110492890 LOC106561126 coding downstream 321650 60537619 ~ 60559746 (-)
ppp1r3ab LOC106561019 coding downstream 410838 60448878 ~ 60470558 (-)
LOC110492857 LOC106561020 coding downstream 443836 60419131 ~ 60437560 (-)
zgc:172145 LOC106561011 coding upstream 5551 60888793 ~ 60899520 (-)
LOC110493151 LOC106561010 coding upstream 161011 61044253 ~ 61059973 (-)
LOC110493152 LOC106561008 coding upstream 215549 61098791 ~ 61115991 (-)
LOC110493153 LOC106561006 coding upstream 242856 61126098 ~ 61172031 (-)
LOC110493154 LOC106561003 coding upstream 307438 61130321 ~ 61232604 (-)
G167706 LOC106561017 non-coding downstream 141045 60695263 ~ 60740351 (-)
G167719 NA non-coding downstream 209937 60671158 ~ 60671459 (-)
G167709 LOC106561016 non-coding downstream 214270 60664955 ~ 60667126 (-)
G167014 NA non-coding downstream 269881 60611285 ~ 60611515 (-)
G167013 NA non-coding downstream 270197 60610965 ~ 60611199 (-)
G167842 NA non-coding upstream 46410 60929652 ~ 60929867 (-)
G167844 NA non-coding upstream 52230 60935472 ~ 60935735 (-)
G167845 NA non-coding upstream 53732 60936974 ~ 60937229 (-)
G167922 NA non-coding upstream 172602 61055844 ~ 61097591 (-)
G167938 NA non-coding upstream 236589 61119831 ~ 61123748 (-)
G167723 NA other downstream 202355 60678723 ~ 60679041 (-)
G166877 LOC106613263 other downstream 365874 60515226 ~ 60515522 (-)
G166794 LOC106561021 other downstream 474588 60402348 ~ 60406808 (-)
G167866 NA other upstream 91520 60974762 ~ 60975021 (-)
G168021 NA other upstream 371270 61254512 ~ 61256015 (-)
LOC110493186 mlkl other upstream 407897 61290149 ~ 61303507 (-)
G168078 NA other upstream 607192 61490434 ~ 61491671 (-)
G168141 NA other upstream 631995 61515237 ~ 61515656 (-)

Expression


Co-expression Network