zgc:172145 (LOC106561011)


Basic Information

Item Value
gene id zgc:172145
gene name LOC106561011
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60888793 ~ 60899520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567393.2
TGAAGGATTTCGATAGTATGATCACAGTAGGCTTAAACTACAATTCATGTTCATGCATTAGCCACTGTTCTTGCTGACATGCTCCCTTTCTAACAATGTTCACTCGTCGTTGTTTGATTGTAGGCTACTATTCGCAATTGACGTCGCACTTCACTTTGATATAGGGCGGTGTGTCGTTCAACGCACCGGATGAACTTGAGAGGCTGAACGGGAAACGATTTCTCCGTTTCTATTATCCTACACTCCCGCAACCAAAGACTGACTGTATACAACACTTATGGTTTGCGCAACAACGGTTGTTGTTACAATCTAACCACAGTCAGGACTTTTTGAACATGGCTGAACCAAGCGGCAAAAGATTGAAAACCAACCTGCCTAACTGTAAAACTCACCGAACTTTTCTCGGGAGCAGAGTGAAACAGAATCTCCCAGCGGTCGTTGAGGAGAGTTTGTGCGGAGTATCTACATTGATTATGGAGGTCGCTTACATACTTGATGCACTGGCCAAGATATTTGAGCAGGATGACATTGCCTTGCCAAGAGTGGCAGCGTTCTTCCATGAGCAGTCTGTGAACGAGCAGGCGAAGGCTGAGGCCATGCTAGACTACCTGTCAGACAGAGGGGGACAGTACTGCAGTAAAGACATCCAGAGGCCAGGCTGTGAGGAGGTGTATGCTGTGATCCCAGCCCTGGAGCTGATGCTGGGCCATTGGAAGGAGGAGATGGCCGTGATGGTGGAGCTCAGCCAGTTGTCCAAGGAGCACAGCGACCCGCACTCCGCCAGTGTGATCAAGAGCCGCTTCCTGGGGCCATTGGTGCCCCGTGTCAAACTGCTGGGAGACCTGCTGACCAACGCACGTAGGGTGGGCTGCACCAGCGACCGCTCGGGGGGCTTCGGGGAGTACCTCATCGACCAGCTGCAGGAGGAGTTGACCAACGTCTCCAGTAGATAAATCACTCAGTAGTTTATATTAAAGAAAACTACTTTGCGAGTTCGACTCTCAAAACAAGCCTCTCCTGTCAGTGTTTTATGGCCACCTATATTGTATTATAGCTTGTCTGTAAGGCCAATGTATTGTAGAAGACACTCCCTATTCCTACATAACTTGCTGGCTCCTCAATAGAAATGATTGAAACTGAAAAAACAAGGGGAATAATTTGAGGTGTATGGCTTAGTTACAACTAGGTTTATTCGGAACCAAGCTGTAGCACTTCTTCTTAATTCCTGTTTGCATTTCAAAAATAATGAATACATATATTATGCACTAGATTTGGGCATTTAAAAGGACACAGCCTCATTGTATCATGTTCAGTGCctttggaaattattcagacccctttactttttcaacattttgttaggttacagccttattctaaaatgtattaaatcgttttttccctcaatctacacacaatacacgataatgacaaagcaaaaagttttttttaatgtttgctaatttattaaaaataaaaaacagatatcacatttacataagtattcagaccctttactcagtactttgtttaagcacatTTGGCAATGATTTCAGCCtcgactcttcttgggtatgacgctaaaagcttAGCACAGCtatatttgggtagtttctccatTTCTTCTCTGacgatcctctcaagctctatcaggttgcatggggagctttgctgcacagctatttt

Function

NR:

description
ferritin, heavy subunit-like

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567393.2 True 1686 mRNA 0.44 4 60888793 60899520

Neighbor

gene id symbol gene type direction distance location
LOC110493125 myod1c coding downstream 5551 60881396 ~ 60883242 (-)
LOC110493006 LOC106561012 coding downstream 38230 60835157 ~ 60850563 (-)
LOC110492911 LOC106561018 coding downstream 261320 60625142 ~ 60627473 (-)
LOC110492890 LOC106561126 coding downstream 329047 60537619 ~ 60559746 (-)
ppp1r3ab LOC106561019 coding downstream 418235 60448878 ~ 60470558 (-)
LOC110493151 LOC106561010 coding upstream 144733 61044253 ~ 61059973 (-)
LOC110493152 LOC106561008 coding upstream 199271 61098791 ~ 61115991 (-)
LOC110493153 LOC106561006 coding upstream 226578 61126098 ~ 61172031 (-)
LOC110493154 LOC106561003 coding upstream 291160 61130321 ~ 61232604 (-)
LOC110493155 LOC106561004 coding upstream 333513 61233033 ~ 61250701 (-)
G167706 LOC106561017 non-coding downstream 148442 60695263 ~ 60740351 (-)
G167719 NA non-coding downstream 217334 60671158 ~ 60671459 (-)
G167709 LOC106561016 non-coding downstream 221667 60664955 ~ 60667126 (-)
G167014 NA non-coding downstream 277278 60611285 ~ 60611515 (-)
G167013 NA non-coding downstream 277594 60610965 ~ 60611199 (-)
G167842 NA non-coding upstream 30132 60929652 ~ 60929867 (-)
G167844 NA non-coding upstream 35952 60935472 ~ 60935735 (-)
G167845 NA non-coding upstream 37454 60936974 ~ 60937229 (-)
G167922 NA non-coding upstream 156324 61055844 ~ 61097591 (-)
G167938 NA non-coding upstream 220311 61119831 ~ 61123748 (-)
G167723 NA other downstream 209752 60678723 ~ 60679041 (-)
G166877 LOC106613263 other downstream 373271 60515226 ~ 60515522 (-)
G166794 LOC106561021 other downstream 481985 60402348 ~ 60406808 (-)
G167866 NA other upstream 75242 60974762 ~ 60975021 (-)
G168021 NA other upstream 354992 61254512 ~ 61256015 (-)
LOC110493186 mlkl other upstream 391619 61290149 ~ 61303507 (-)
G168078 NA other upstream 590914 61490434 ~ 61491671 (-)
G168141 NA other upstream 615717 61515237 ~ 61515656 (-)

Expression


Co-expression Network