LOC110493150 (cacna2d4)


Basic Information

Item Value
gene id LOC110493150
gene name cacna2d4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60999577 ~ 61091420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567396.2
TGCAAGCCTCCCTCCCATCATTTTTCTGTGGGTTATTTTCATCTCGTCGTTGTCAGTGTGACGGCACGTCTGTCTGGTCTGTGCATAACCTGTTCATCTGCTCTGGTATTCCAGAGACCAGGAAGGGATCCTTCACCGCCAGGATGCAGAGAGGAACTACAGTATCTAGATCTTGTGTATGACCACCATGCAACTTTTGATGAATACCTCTTAGAGTGTCGTCTTCGTGGTTGATCGACGGGTCACAGTGATCGAAACAGTGCCTCTTCATTGTGTCATGTTGGAGTCTTTTGAGCTTCTCAACTTCTAACACTAGAAGGCAACACTTCTAACACCAACAGGAGAATGCTGTAGTGCTTTAGGATTGGAAAAAGGAGAGGTTGGCCTGTGGTTTTGAGAGAATGAGAAGATAACGAGAAAGACTTGGGGGATGACAGAATCCCGACTGCGGGTATTTACGGACTCAGAGGAGGACAGTATTCCGGTTCACATATTCAACACAGTCAAAAATGACGTCATGGGGCTTCCACTTCCTTTAGCCGACATGAGAACACTTTCCCCCACAGACTCATTGGGATGTTCCTCGACACTTTCCTGAGGCTTGCTGATCCTGAGgtgcgttgttgttgttttgttgtgtgcTGACTGAGACATTGGAGAGGAGCCATAGATACCACCGGTACAGATGTCTTCCTCAGGCGACACAGTGGGCCCAGGCAGGATGGGACTACTACCCAGGGCTGACACAGTGGACCCTTACAGGATGGGACTACTACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACTGTGGGTCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTAGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGCCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAAGGCTGACACAGTGGACCCTTACAGGATGGGACTAGGACCCAGGGCCGAGCCAGGTGGAGTAACGAACAGGCTGGGACCCAGAGGGACTCCAGCGGGGCTGAGACTGGGCCTGTGGATCCTGTGTTTCAGCTGGTTCTGCTTCACTGCTCACGCTCAGATGAAGATACCACCTGAGACggtccaAGATTGGGCAAATGTCCTTTCAGTGCAACTACGCGAGGTTACCACAAGATATTCGGGAGCTAACATTCTGCAAAAGAAATTCAGAGATGTAGAGTCCATTATCAAGATAGTGGACATCGATGGGAGAGCCCAAGTGAGGGACTTTTCAGAGGACATAGAGAGAATGCTGGGGTCCAAGATGAAGTCTGTTAAGCGGTTGGCTGAGTCTGCGGAGGATGCAGATTTGTACCACGAGTTCAACAAAACTCTACAGTTTGACTACTATAACTCCATGCTGGTGAACACAATGGATGACGATGGTAACTTCATAGAGCTGGGTGGGGAGTTTCCTCTGGAGGAGAATGAGCATTTCAACAACATCCCAGTCAACACAATGCAGAGTGACGTACAGGTCCCCACCAATGTCTAcaacaaagATCCCTACATCCTCAATGGAATCTACATGTCGGAAGCTTTGAATGACGTGTTCGCCAATAACTTCAAGAAAGACCCCACCCTCACCTGGCAGTACTTTGGCAGCTCCTCGGGTTTCTTCAGAATCTACCCTGGTATCAAATGGACTCCAGATTCAAATGGTGTGGCTGCTTTTGACTGCAGGAACCGTAACTGGTACATTCAGGCTGCCACCTCACCAAAGGACATTATCATTGTGGTGGACATCAGTGGCAGTATGAAAGGCTTGAAGATGACCATTGCCAAACACACCATCAACACCATCCTGGACACGCTGGGGGAGAACGACTTTGTCAACGTCATTGCTTACACTGACTACGTGCGCTACGTAGAGCCCTGCTTCCAAGGCACTCTGGTGCAGGCTGATTTGGACAACCGTGAGCATTTTAAGGTGCTGGTGGACGACCTGCATGTGAAGGGAGAGGGTAAAGTTGCGAAGGCCATGAAGGAATCGTTCAAAATCTTGAACGAGGCAGCGACCAAGGGCCAAGGCAGCCTGTGCAACCAGGCCATCATGCTGATCACAGATGGAGCCATGGAGGACTTCAAGGACGTGTTTGAAGAGTTCAACTGGCCTGATCGCAGGGTGCGGCTCTTCACTTACCTTATAGGCAGAGAGATGACCTTTGCAGACAACACCAAGTGGATAGCCTGCAACAATAAGGGTTACTACACACACATCTCCACTCTGGCTGACGTACAGGAGAATGTCATGGAGTACCTTCATGTCTTGAGTCGACCAATGGTCATCAATCACAATCATGACATCATCTGGACGGAGGCCTACATGGACTCTGTGCTCTTTGCCACAAAGGCTCAAAGTTTACTTCTCATGACCTCCGTGGCAATGCCTGTCTTCAGCAAGAAGAAAGAGACGcTGTCCCATGGGATTCTGCTGGGTGTGGTGGGTTCTGACATCCCCCTGCTGGAGGTCATGAAGCTGGCTCCCAGATATAGGCTGGGTCCACATGGTTACGCCTTCCTCATCACCAACAACGGTTACATCCTGGCACACCCTGACCTGCGACCTCTTTATAAAGATGGTAAGAAGCTGAAGCCCAAGCCCAACTACAACAGTGTGGACCTGGCTGAGGTGGAGTGGGAGGACATAGATGAGACACTAAGGACAGCCATGGTGAAAGGGGAGACAGGCACTCTGTCCTTAAATGTGAGAGCATCAGTGGACAAAGCGAAAAGGCCTATGTTCTTAACAAATGACTATTTCTACACAACCATCAACGACACCCCATTCAGTTTTGGTATGGTGCTGACCAGGGGTCACGGACAGCTGATGTTCATGGGGACGGTCTCTGTGGAAGAGGGCCTGCATGACCTGACGTCCCCTGATCTATCCATAGCCGCTGAGTGGACATACTGTGAGACAGACATTGACCCTCACCACCGCAAATACTCTCAGCTCCAGGCTGTCATTCGCTACCTGCAGGGGAAGGAGCCTGACCTGGAGTGTGACGATGTGCTGCTGCAGCAGACCCTGTTTGATGCTGTGGTGACAGCCCCCTTAGAAGCCTACTGGCAGGCAATAATGCTCAATGCATCTGGGACGGAGGCGGGTGTGGAGACAGCCTTCCTGGGAACTCGCTCTGGCATCATCCGGCTGACCAGATACACCGGCATGGAGACCAGGGTCGCCAAGAAGTTCCTGACTCCAGCGGATAAGGACAACCTGTTCACCATGGACCACTTCCCCCTGTGGTACCGTCTGGCCATGGAGAACCCTCCCGGAAGATTCCTCTACTACATGCCGGTGGAGGACAACGACAACAAAGACAAGACagGGGCGTCGAAGTATGTCATAGCTGTCACAGCTGTGACTGTATCATCGGGAGGCAAGACAGCCATGGCTGGAGCCATCGGGGTGCAGATGTCCTTGGAAATGCTGGAGAAGAGGCTATGGGCCATTACCTTTCAGCCCAATGACACAGATtgtACAGAAGTGGAAGGTGTCTGCCCTCTCACCTGTCAAAGCATTGATGTCAACTGTTTCCTTGTGGACAGCAACGGTTTCATCATAGTCTCGAAAGAGAGGTCAGAGGTCGGACGTTTCTTTGGGGAAGTGGATGGGTCTGTGATGACAGCGTTGATCACGTCAGGCATGTTCAAGCAGGTGTCGCTGTATGACTACCAGGGTATGTGTAGATCAGGACACAGTCATTCCAGTAGTGCTCGGCCTCTGCTCAGTCCTTTCTACGGCCTTGCGGCAGTGATCAAATGGTTCTTTTCTCACATGTTGATGTTCTTAATGGAGTTCAACTTCTGTGGGTTGTGGCACTCGGATTACATTGTAGACGCCAAGGCTGGCTACCATACATCCCATAAAGCCAAGAAGGTTGACGCGCTGCAGCCGTGTGACACAGAGTATCCTGGCTTCGTGTACGATTCCTCCATCAGAGAAACCAACAGCCTCATCAAATGTGGTCGTTGTCAGAAGATGTTTGTGGTGCAGGCGGTTCCTGAAAGTAACCTGGTGTTGATGGTGGTCCAGGCGGACTGTGACTGCTCCCGCCAGTACTCCTCCATCACCCTGGAGCCCAAGGAGGTCAAATACAACGCATCAGTCAAGTGTAACAGGATGAAATCTCAGAAAGTCCGCCGGCGCCCAAACTCCTGTCACGCCTATCATCCTAAGGAAAATGCCAAGGACTGTGGAGGAGCTTCAGAGATCAGCCTATCGGTGGCCGTCTTCTTGACTTCTCTGGCCACTTCATTGGCCCTCTGAAGATGGACATAACAAGGCTCCAGATCTCTTATGGCCGTTCACATTTCCTTtttgtatattttattattttataaaagACCTTTAACTACATAAAGGACCTACCAATACAGTAGTTGAAGTCAATTCCGGAGCGAGGGCTATTTTCTAGTAAGACTCCTTTTCCcacaatgagagagaaagagactcaaCAGTCCAAACAAAAGCCACATTTCTTTGCTTGGGACTCTTTTGCATGAGCCATGGGATATGAACTTGTGGACATGCGATGCAATGAGAGACTGTTATTTTCATGGAGACACTGATATGGTAGGACGAACCCTGCCCTCTGCTGGACAATCCATCTGATTTTTATACACAGTAACATTAAGCTGTATTGtattaaaactattttttatGTTGAAATGAACTACTGTACCAAAACTGTGTGCTATGAAATAGGAATATTCATATTTTTGTGGTATACTTGATGAACATTTGCAATAAATAATGTATGTCATTACATTCGTGTTTAGACCGGGAA
>XM_036952286.1
CAAGCCTCCCTCCCATCATTTTTCTGTGGGTTATTTTCATCTCGTCGTTGTCAGTGTGACGGCACGTCTGTCTGGTCTGTGCATAACCTGTTCATCTGCTCTGGTATTCCAGAGACCAGGAAGGGATCCTTCACCGCCAGGATGCAGAGAGGAACTACAGTATCTAGATCTTGTGTATGACCACCATGCAACTTTTGATGAATACCTCTTAGAGTGTCGTCTTCGTGGTTGATCGACGGGTCACAGTGATCGAAACAGTGCCTCTTCATTGTGTCATGTTGGAGTCTTTTGAGCTTCTCAACTTCTAACACTAGAAGGCAACACTTCTAACACCAACAGGAGAATGCTGTAGTGCTTTAGGATTGGAAAAAGGAGAGGTTGGCCTGTGGTTTTGAGAGAATGAGAAGATAACGAGAAAGACTTGGGGGATGACAGAATCCCGACTGCGGGTATTTACGGACTCAGAGGAGGACAGTATTCCGGTTCACATATTCAACACAGTCAAAAATGACGTCATGGGGCTTCCACTTCCTTTAGCCGACATGAGAACACTTTCCCCCACAGACTCATTGGGATGTTCCTCGACACTTTCCTGAGGCTTGCTGATCCTGAGgtgcgttgttgttgttttgttgtgtgcTGACTGAGACATTGGAGAGGAGCCATAGATACCACCGGTACAGATGTCTTCCTCAGGCGACACAGTGGGCCCAGGCAGGATGGGACTACTACCCAGGGCTGACACAGTGGACCCTTACAGGATGGGACTACTACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACTGTGGGTCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTAGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGCCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAAGGCTGACACAGTGGACCCTTACAGGATGGGACTAGGACCCAGGGCCGAGCCAGGTGGAGTAACGAACAGGCTGGGACCCAGAGGGACTCCAGCGGGGCTGAGACTGGGCCTGTGGATCCTGTGTTTCAGCTGGTTCTGCTTCACTGCTCACGCTCAGATGAAGATACCACCTGAGACggtccaAGATTGGGCAAATGTCCTTTCAGTGCAACTACGCGAGGTTACCACAAGATATTCGGGAGCTAACATTCTGCAAAAGAAATTCAGAGATGTAGAGTCCATTATCAAGATAGTGGACATCGATGGGAGAGCCCAAGTGAGGGACTTTTCAGAGGACATAGAGAGAATGCTGGGGTCCAAGATGAAGTCTGTTAAGCGGTTGGCTGAGTCTGCGGAGGATGCAGATTTGTACCACGAGTTCAACAAAACTCTACAGTTTGACTACTATAACTCCATGCTGGTGAACACAATGGATGACGATGGTAACTTCATAGAGCTGGGTGGGGAGTTTCCTCTGGAGGAGAATGAGCATTTCAACAACATCCCAGTCAACACAATGCAGAGTGACGTACAGGTCCCCACCAATGTCTAcaacaaagATCCCTACATCCTCAATGGAATCTACATGTCGGAAGCTTTGAATGACGTGTTCGCCAATAACTTCAAGAAAGACCCCACCCTCACCTGGCAGTACTTTGGCAGCTCCTCGGGTTTCTTCAGAATCTACCCTGGTATCAAATGGACTCCAGATTCAAATGGTGTGGCTGCTTTTGACTGCAGGAACCGTAACTGGTACATTCAGGCTGCCACCTCACCAAAGGACATTATCATTGTGGTGGACATCAGTGGCAGTATGAAAGGCTTGAAGATGACCATTGCCAAACACACCATCAACACCATCCTGGACACGCTGGGGGAGAACGACTTTGTCAACGTCATTGCTTACACTGACTACGTGCGCTACGTAGAGCCCTGCTTCCAAGGCACTCTGGTGCAGGCTGATTTGGACAACCGTGAGCATTTTAAGGTGCTGGTGGACGACCTGCATGTGAAGGGAGAGGGTAAAGTTGCGAAGGCCATGAAGGAATCGTTCAAAATCTTGAACGAGGCAGCGACCAAGGGCCAAGGCAGCCTGTGCAACCAGGCCATCATGCTGATCACAGATGGAGCCATGGAGGACTTCAAGGACGTGTTTGAAGAGTTCAACTGGCCTGATCGCAGGGTGCGGCTCTTCACTTACCTTATAGGCAGAGAGATGACCTTTGCAGACAACACCAAGTGGATAGCCTGCAACAATAAGGGTTACTACACACACATCTCCACTCTGGCTGACGTACAGGAGAATGTCATGGAGTACCTTCATGTCTTGAGTCGACCAATGGTCATCAATCACAATCATGACATCATCTGGACGGAGGCCTACATGGACTCTGTGCTCTTTGCCACAAAGGCTCAAAGTTTACTTCTCATGACCTCCGTGGCAATGCCTGTCTTCAGCAAGAAGAAAGAGACGcTGTCCCATGGGATTCTGCTGGGTGTGGTGGGTTCTGACATCCCCCTGCTGGAGGTCATGAAGCTGGCTCCCAGATATAGGCTGGGTCCACATGGTTACGCCTTCCTCATCACCAACAACGGTTACATCCTGGCACACCCTGACCTGCGACCTCTTTATAAAGATGGTAAGAAGCTGAAGCCCAAGCCCAACTACAACAGTGTGGACCTGGCTGAGGTGGAGTGGGAGGACATAGATGAGACACTAAGGACAGCCATGGTGAAAGGGGAGACAGGCACTCTGTCCTTAAATGTGAGAGCATCAGTGGACAAAGCGAAAAGGCCTATGTTCTTAACAAATGACTATTTCTACACAACCATCAACGACACCCCATTCAGTTTTGGTATGGTGCTGACCAGGGGTCACGGACAGCTGATGTTCATGGGGACGGTCTCTGTGGAAGAGGGCCTGCATGACCTGACGTCCCCTGATCTATCCATAGCCGCTGAGTGGACATACTGTGAGACAGACATTGACCCTCACCACCGCAAATACTCTCAGCTCCAGGCTGTCATTCGCTACCTGCAGGGGAAGGAGCCTGACCTGGAGTGTGACGATGTGCTGCTGCAGCAGACCCTGTTTGATGCTGTGGTGACAGCCCCCTTAGAAGCCTACTGGCAGGCAATAATGCTCAATGCATCTGGGACGGAGGCGGGTGTGGAGACAGCCTTCCTGGGAACTCGCTCTGGCATCATCCGGCTGACCAGATACACCGGCATGGAGACCAGGGTCGCCAAGAAGTTCCTGACTCCAGCGGATAAGGACAACCTGTTCACCATGGACCACTTCCCCCTGTGGTACCGTCTGGCCATGGAGAACCCTCCCGGAAGATTCCTCTACTACATGCCGGTGGAGGACAACGACAACAAAGACAAGACagGGGCGTCGAAGTATGTCATAGCTGTCACAGCTGTGACTGTATCATCGGGAGGCAAGACAGCCATGGCTGGAGCCATCGGGGTGCAGATGTCCTTGGAAATGCTGGAGAAGAGGCTATGGGCCATTACCTTTCAGCCCAATGACACAGATtgtACAGAAGTGGAAGGTGTCTGCCCTCTCACCTGTCAAAGCATTGATGTCAACTGTTTCCTTGTGGACAGCAACGGTTTCATCATAGTCTCGAAAGAGAGGTCAGAGGTCGGACGTTTCTTTGGGGAAGTGGATGGGTCTGTGATGACAGCGTTGATCACGTCAGGCATGTTCAAGCAGGTGTCGCTGTATGACTACCAGGGTATGTGTAGATCAGGACACAGTCATTCCAGTAGTGCTCGGCCTCTGCTCAGTCCTTTCTACGGCCTTGCGGCAGTGATCAAATGGTTCTTTTCTCACATGTTGATGTTCTTAATGGAGTTCAACTTCTGTGGGTTGTGGCACTCGGATTACATTGTAGACGCCCATAAAGCCAAGAAGGTTGACGCGCTGCAGCCGTGTGACACAGAGTATCCTGGCTTCGTGTACGATTCCTCCATCAGAGAAACCAACAGCCTCATCAAATGTGGTCGTTGTCAGAAGATGTTTGTGGTGCAGGCGGTTCCTGAAAGTAACCTGGTGTTGATGGTGGTCCAGGCGGACTGTGACTGCTCCCGCCAGTACTCCTCCATCACCCTGGAGCCCAAGGAGGTCAAATACAACGCATCAGTCAAGTGTAACAGGATGAAATCTCAGAAAGTCCGCCGGCGCCCAAACTCCTGTCACGCCTATCATCCTAAGGAAAATGCCAAGGACTGTGGAGGAGCTTCAGAGATCAGCCTATCGGTGGCCGTCTTCTTGACTTCTCTGGCCACTTCATTGGCCCTCTGAAGATGGACATAACAAGGCTCCAGATCTCTTATGGCCGTTCACATTTCCTTtttgtatattttattattttataaaagACCTTTAACTACATAAAGGACCTACCAATACAGTAGTTGAAGTCAATTCCGGAGCGAGGGCTATTTTCTAGTAAGACTCCTTTTCCcacaatgagagagaaagagactcaaCAGTCCAAACAAAAGCCACATTTCTTTGCTTGGGACTCTTTTGCATGAGCCATGGGATATGAACTTGTGGACATGCGATGCAATGAGAGACTGTTATTTTCATGGAGACACTGATATGGTAGGACGAACCCTGCCCTCTGCTGGACAATCCATCTGATTTTTATACACAGTAACATTAAGCTGTATTGtattaaaactattttttatGTTGAAATGAACTACTGTACCAAAACTGTGTGCTATGAAATAGGAATATTCATATTTTTGTGGTATACTTGATGAACATTTGCAATAAATAATGTATGTCATTACATTCGTGTTTAGACCGGGAA

Function

symbol description
cacna2d4 Enables voltage-gated calcium channel activity. Involved in calcium ion transmembrane transport and detection of light stimulus involved in visual perception. Part of voltage-gated calcium channel complex.

NR:

description
LOW QUALITY PROTEIN: voltage-dependent calcium channel subunit alpha-2/delta-4-like

GO: NA

KEGG:

id description
K04861 CACNA2D4; voltage-dependent calcium channel alpha-2/delta-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567396.2 False 5009 mRNA 0.51 36 60999577 61091420
XM_036952286.1 True 4986 mRNA 0.51 35 60999579 61091420

Neighbor

gene id symbol gene type direction distance location
LOC118937285 NA coding upstream 124140 60873225 ~ 60875437 (+)
LOC110493059 LOC100194658 coding upstream 133132 60851417 ~ 60866455 (+)
LOC110493043 LOC106561013 coding upstream 152602 60781715 ~ 60846975 (+)
LOC110492990 LOC106561017 coding upstream 259215 60735125 ~ 60740362 (+)
LOC100170211 LOC100170211 coding upstream 265546 60725590 ~ 60734031 (+)
LOC110493175 LOC106561005 coding downstream 92423 61130439 ~ 61193594 (+)
LOC118941124 NA coding downstream 166296 61257716 ~ 61259025 (+)
LOC118941126 NA coding downstream 219908 61311328 ~ 61312547 (+)
LOC110493325 LOC106561124 coding downstream 385691 61477111 ~ 61479816 (+)
LOC110493335 LOC106560997 coding downstream 407676 61499096 ~ 61509316 (+)
G167245 NA non-coding upstream 3219 60996153 ~ 60996358 (+)
G167227 NA non-coding upstream 24280 60974991 ~ 60975297 (+)
G167219 NA non-coding upstream 38200 60961097 ~ 60961377 (+)
G167205 NA non-coding upstream 62582 60936768 ~ 60936995 (+)
G167204 NA non-coding upstream 63088 60936253 ~ 60936489 (+)
G167306 NA non-coding downstream 12315 61103735 ~ 61104351 (+)
G167311 LOC106561008 non-coding downstream 17216 61108636 ~ 61109538 (+)
G167229 NA non-coding downstream 28315 61119735 ~ 61126534 (+)
G167365 NA non-coding downstream 104482 61195902 ~ 61196235 (+)
G166878 NA other upstream 483697 60515632 ~ 60515880 (+)
G166131 lmod2 other upstream 1046412 59945708 ~ 59953165 (+)
G163660 LOC106561040 other upstream 2783194 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 3067586 57928150 ~ 57931991 (+)
G167325 LOC106561003 other downstream 140776 61232196 ~ 61232545 (+)
LOC110510683 LOC106560954 other downstream 440169 61525283 ~ 61535728 (+)
G167609 LOC106560954 other downstream 635539 61726959 ~ 61727454 (+)
LOC118936783 LOC106560954 other downstream 788350 61870393 ~ 61880657 (+)
G169130 NA other downstream 1693938 62785358 ~ 62785643 (+)

Expression


Co-expression Network