LOC110493151 (LOC106561010)


Basic Information

Item Value
gene id LOC110493151
gene name LOC106561010
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61044253 ~ 61059973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952293.1
CgtaatgcatacacacacacacgcacgtacacatgcacacacacaaacagacaaacactCAGACACACCCACATGGCACGCATATATATGCCATAGAAACTGCACAGCACTCTCCTCCAGGATCATATAAAGACGTGGTGTATCCTGCAAGAGCGACAGTGCGTTagctctctcgcacacacacacacacacacacacatacacactgagctAGACTGAACCTCTGGACAGTAGTGCACTCAGACTACAAGGAAAAGCAGAGTTGGAAAGAGGAcccgagaggagaggagagaggagaggagagggagagccactgctctgagagacagagggagagagagagaaaacaaaagagAAGACTGGAGCATGTGTTTCTCGACCAAGAACATCTCCCCTTGGGATCCCAACATCTGCATAAAGCAGGAGAAACAGCTGAACCGAACCACATGCAGCTAAAGGACCTTTCCCCAAGCTCCTCAGTTAGCAGCATTATCAGATGAAGCATATTATTTTTTCCCACACGGGGAGGATAAAAGACACTACTGTAGCACTTTTCTTGTAGAATTATTGTAAGAGCTATAGCACTTTGGAGGCAGAAACAGATGGGTTCTGCATAGCTGGTGGGTGGCACAAGGACGACACCTACTGCCAGTGCCAGTCTATGGTGGCACCAGAGTGGGCAGAGCAGACATGCAGCCCCTTGACAGGACCCACCCGGAGAGCCTGGGTGAGTGACTACCGCAGGGGGCTGATTGACAGGCAGAAGTGTTTAGTTACTCGTCTTTTAAATTGATTTCACAATTTCCTGTACGTAGATTTGACTTGGCATCCAACGAATTCTGGGGGTTGACTTAGATTACTCAGACATTTGGCGAAAATCTTGCACTGGTCATGTCATTGAAATGTGTAATTCAATTTCTCTCCTTTtaaatctctcctctcctccctcccgaGTCTATGCAGCCCTGCCCAGTCTACTGCTGGTACTGCTCGGTCTGCTAGAGGCGGCTAGCGGTTGTCCCACCTTGTGCATCTGCAAAAGCAATGGCACAGACTGTACAGGCCTAGCTCTGCTCTCCCTAACCACCGTCCTGCCCCTGCTGCCCCAGGACACCCGCACCCTCCGCCTGCCCCACAACAACCTCTCCTCCCTAGGCGACAGGGACCTGTCCAACCTCAGCGCTCTGGAGCTCCTGGACCTCTCCGACAACCACCTCTTCAGCCTGCAGCCAGGGGCATTATCTGGACTCAGTAGCCTCCAGTGGCTCAACCTCTCTGGTAACAATCTGGGTGACTGCCCCCTTCCTACCTCTCTTGACCCCAGTAACCAGACGGAGGTGACACAGAGTAACAGGAGTTGCTGGGGGCTGAGCCGAGAGCTGTTCCAGGGTCTGTGGACACTGAAAGGGCTGGACTTGTCGCTGAACGGCCTGGTTGTTCTGCCCATGGGCCTGCTGGACGAGCTCCAGGGCCTGGCCTGGCTGTCTCTGGCTGGAAACAAGCTGCAGAGCTTGGACAGAGCCACCTTCCAGCCCCTGGGCAGCCTGTTGAGCCTCCAACTGGCAGGGAACCCATGGGAGTGTGACTGCAACCTGAGGGACTTCAAGCACTGGATGGAGTGGATGCtgtacagacATGGGCAGGTGGATGCTGTGAAGTGCaacctccccaaagagctgaGGGGGCAGGACATCCGCAGCATCCCCATAGAGATGTTCAACTACTGCCTGCAGCTGGACAACCAGGACAGTGTCCCTGGCTACAACGGGCCCAGAGGAGGAAGCCCACCCTGCGTCGGTCGGATTAACGGACCCATGAACGGGCCCCAGGTTAACCAAGAAGAATGTGTGCGCCAGCGCTACCGGCCCGTTAGCGTGCGCAGGGCCTGGGGGACTCAGATCGTGGCGGCGTGTGTGTGCGGCGTGGTGTGCGTGTTGATGGTGGTGGCGGCCACCTACGGCTGTATCTACGCCTCTCTCATGGCCAAGTACCAGAGGGAGCTGAAGAACAGAGGGCAGCCGCTGATggcgggggagggagggggggagacagaTGCTGAGGACGGAGCCTGTATGTCCTCCCCAACGTCACCAGATGAGCCAGAGCTAAAGGAGTCCAGCCCGATAGTCCACGGATACAGAATAACGGGCTTTTGACCATTGTTTTTCTGACTGGCTGAAACTCCTGTTACAAGCATTCAGTGGACTGAACTGCATGTCGTACTCCTCTGTTAGGGCATTCTAGGTGAGGGAATGTACGGAGCTGAGAAAGAATATCCCTGCTGCACATTGCTGGTGGTGGAGTCATACAGACATGATCATACAGGTGATCGTATAGAGTAAAAACTGGAATCCTGCTTTGCTTCAAGACGTGTGGATGCTCTGTGGTTTGTTCTGCCCTGTGACTCTTTAGTCAGCTCTCCAACTGTGTGTTCATGATTTTGGCACCTCTGCACCTTGGTTAAAGAGACGTTCCTCGAAATTGTCTTTGGAATTGTTATTATTCTTTGATCCCACCGTTGTCAAAGTTATTTGTGTTTGAAGCAAAACATGTCAACAGATCATAGATTAAGTCAACATGTTGAATATCCCTGTCCAATATCCCTGTGTTGTAACTGCTCCGAATGTTTCGCTACAATAAGCCCAGGTAAACAATCCCAGTAGTGGTTGTCGCTCAATTAGTTGGATGAGAGAAAACCAAAAAATAGTTGAAATGAATGTACTGAGAAATTAATGTTAAAGCAGTCTTTCTTGTGTATTAGATCTGTGCTCATGTGTAGTTGCTTAATTTAATATTCCAAATCATATCTATGCAGAGGTAGCCTGCTTTCAATGTTCCAAAGCCATACAATACAACAGCACGCTACTGACCTCTAGAGGATGTTATGATAACAGCAGCTGAAGAGAATCAGTTCCATGGATAGCAGCCATATTCATTACAAAAGGAATCTAGTTGCCAGCTATTTCCATTCAACCATTTAGAACTGTCAAAGAGATCATCAACACTGCCCTaaaacaggtgtgtatatatatacaactATCTCCTTATTTAGTTAACCCTTATTTTTGTCTCTATGTTAAAGCTGAAATCTGCGTAAGGTAAAACCCaggtgttattgtttttgttttgttcaggAAATGGAGTAGAGGAGCATCCAGCATCATGGTAAAATAAAATGGTAATACGTACTCTACTGTTCTATCGCATGTGCAATGATGTCTGAGGGGGGGGAAAAACTGTGTGGTTGTTTGAAGTAACGTTTTTGTTTTGGAAGTAGCAGTTTCACCGCTACGGATTCCAGCTTTAAGGGCCACAGCTTTAAGGGCCACAGCTTTAAGGGCCACACACACCCTATGCAAACAGAGCAACGGCGCGTCGTATACAGTCCCTTCCAAAATTTGAGCCACACAAAAGAACATAGAACTACGTAGAAAACAACGCTCCATCGCTGCGTTTGCATAGTTTACGTAAAGTGTGTAGGGGCCTTTAAGCACATTCAGTATCTGCTCTTCAGGTTTGCTCCAGAAGACGAAGTGAGAAATGTGATATTCTGTTCATCACGCCGATGAAAATAAAGCATTTATTTATCTATGCTGCCCGTCACAATTTATTCCTGGCTGAATTTTTCATTCTAGCTATATTTATGAGACAGGACTTGAAAAAAAGCCTTTGAAGATGTGAAAAACATCACAGTtgtcacaggaacacacactCAACAGTAACCATGGTC

Function

NR:

description
leucine-rich repeat and transmembrane domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952293.1 True 3730 mRNA 0.49 3 61044253 61059973
Loading

Neighbor

gene id symbol gene type direction distance location
zgc:172145 LOC106561011 coding downstream 144733 60888793 ~ 60899520 (-)
LOC110493125 myod1c coding downstream 161011 60881396 ~ 60883242 (-)
LOC110493006 LOC106561012 coding downstream 193690 60835157 ~ 60850563 (-)
LOC110492911 LOC106561018 coding downstream 416780 60625142 ~ 60627473 (-)
LOC110492890 LOC106561126 coding downstream 484507 60537619 ~ 60559746 (-)
LOC110493152 LOC106561008 coding upstream 38818 61098791 ~ 61115991 (-)
LOC110493153 LOC106561006 coding upstream 66125 61126098 ~ 61172031 (-)
LOC110493154 LOC106561003 coding upstream 130707 61130321 ~ 61232604 (-)
LOC110493155 LOC106561004 coding upstream 173060 61233033 ~ 61250701 (-)
LOC110493207 LOC106561002 coding upstream 209420 61269393 ~ 61282546 (-)
G167845 NA non-coding downstream 107024 60936974 ~ 60937229 (-)
G167844 NA non-coding downstream 108518 60935472 ~ 60935735 (-)
G167842 NA non-coding downstream 114386 60929652 ~ 60929867 (-)
G167706 LOC106561017 non-coding downstream 303902 60695263 ~ 60740351 (-)
G167719 NA non-coding downstream 372794 60671158 ~ 60671459 (-)
G167938 NA non-coding upstream 59858 61119831 ~ 61123748 (-)
G167994 NA non-coding upstream 135451 61195424 ~ 61195689 (-)
G168009 NA non-coding upstream 170380 61230353 ~ 61230592 (-)
G168024 NA non-coding upstream 199096 61259069 ~ 61259943 (-)
G167866 NA other downstream 69232 60974762 ~ 60975021 (-)
G167723 NA other downstream 365212 60678723 ~ 60679041 (-)
G166877 LOC106613263 other downstream 528731 60515226 ~ 60515522 (-)
G168021 NA other upstream 194539 61254512 ~ 61256015 (-)
LOC110493186 mlkl other upstream 231166 61290149 ~ 61303507 (-)
G168078 NA other upstream 430461 61490434 ~ 61491671 (-)
G168141 NA other upstream 455264 61515237 ~ 61515656 (-)
LOC110493507 LOC106560984 other upstream 2086801 63146769 ~ 63224837 (-)

Expression

LOC110493151(LOC106561010) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC110493151(LOC106561010) Expression in each Bioproject

Bar chart with 18 bars.
LOC110493151(LOC106561010) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network