XLOC_020661 (FNDC10)


Basic Information

Item Value
gene id XLOC_020661
gene name FNDC10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 370915 ~ 372723 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040861
GATTAAACGGGTTAATCTGCTCTAAACCACCTTCATCAGAGTTATGATTTTCGACCGTATTTGCTATATTAAAAAGTGTTTTGCAGACAGATTTaaggagagtgagtgagtgagtgagtgaattaacAGTGATTGCGGACACACGCGCGCGCTCCCGCACTCAGACAGATGCGCGCTCTTGATCGGCGGCTGCAGCGGAAGCTCTTCTCCTTCTCTGAGGTCGTCGCGCACGCGCACCGGTGTGATGGCGGCCGCGCGCTCTCTGGTTCTCCGCCGTGAATTGTGAGCAGATAACCGGATAAATCAGAAATGACACGCCGACAGGACTCGGTTCTTCTGGGAAGCTGCGCTATCCTCCTGTTTCTGAACACTGGAGGTTCTGCTCTACCGAACCGGACCAGCGATGTGCATAATGAGGCCACGGACAGTAATAAAGAGCCTCTGAGATTCCCTCTTGAGCTCCAGCACAACAGCAGTGCTGAGGGCCGCTTGCGGGTTCTGGGGGACAGCGGGCCCCTGTGCGCCTACCGCAGTCTAGGCCCCGGTGATCCCGGGCGGCTCTGCTTCCGATACGCCCGGCCTGACTTCAGGTGTGCCAGCGGGTCCTGCCAACAGGTGAGCTCAGGGGACGGGCAGCTCACGGCAAACATACTGACCAATGGAAGCGTGTTCATCCAGTGGGCCCTCAGTGACTCTGTGGCCCCGCCGGGGCAGCCGGGCGGCTTCAGGCTCAGCTGCTGGTGGAACGGCAGCTACACACAGTTCGAATGCGGCGGGGTTCACTTCGGCAGCAGCTGCAGGGATTATTTACTCAATGAGCTGCACACTAACGTGCCCTACCGCCTCTGCATGCGGCCCTACGCCACAGACCGGGCCCAGGCCTGCGTGGAGTTCAGCCTGGCCCCCGGCGGGATGCAGGACATCGTGATCGCCATGACGACCGTGGGCGGGGCCATCTGTGTGATGCTGGTCATCATCTGTCTGCTGGTGGCGTACATTACTGAAAACATCATGAACCCGACTGCGCACACGCATAGatcacacctgcacacacacctgTGATCTCTGAcatcacacacacgcattcacacagcTCAGGATCAGAAGCAAAGGGCTGAATCCTGCTCCTGAGATACACAACACTGCTCACTCGGCACAGAGCATCAATGCATTGTGGGTGACAGTATTTAATCTGAACACAGCAATACACTTTGCTCTATACAGCAGTTTACCTGTGTTAATGTGCATCTGCATTTCATCACTCCACTTTACCAGAATAAACTGTGCACTCACTGATATTCACACTGGTAGTTCTACATTTGTCTTAGAAAAGCAATGGATCAGGGCGTAATGACGACCCTGTCTGTGCTCGCTCATGATAATGTTGAGCAGTGAGGCGGAGCTGCTTTATTTATGTTAGGGTGTGCGTGTCGTTTTATACTTTTGAGTGTCAAACCCAATAATTTGCAGTATGCCTTATCTTTACACAACTCTTCTAATCATGAGTTAGTACTCCTCACCAAAATAAGGACCCACGGACTGGCTGAGCAGTCATTTGAATACTGTGCTTTCTCTGTGACAAACCTTTCTCTCAATAAAGGAGGTGGAATTTAAACAATCAGGTTTGCTTCGTTATttgtttccattcattca
>TCONS_00042229
CCCCTGTGCGCCTACCGCAGTCTAGGCCCCGGTGATCCCGGGCGGCTCTGCTTCCGATACGCCCGGCCTGACTTCAGGTGTGCCAGCGGGTCCTGCCAACAGGTGAGCTCAGGGGACGGGCAGCTCACGGCAAACATACTGACCAATGGAAGCGTGTTCATCCAGTGGGCCCTCAGTGACTCTGTGGCCCCGCCGGGGCAGCCGGGCGGCTTCAGGCTCAGCTGCTGGTGGAACGGCAGCTACACACAGTTCGAATGCGGCGGGGTTCACTTCGGCAGCAGCTGCAGGGATTATTTACTCAATGAGCTGCACACTAACGTGCCCTACCGCCTCTGCATGCGGCCCTACGCCACAGACCGGGCCCAGGCCTGCGTGGAGTTCAGCCTGGCCCCCGGCGGGATGCAGGACATCGTGATCGCCATGACGACCGTGGGCGGGGCCATCTGTGTGATGCTGGTCATCATCTGTCTGCTGGTGGCGTACATTACTGA

Function

symbol description
fndc10 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FNDC10 (fibronectin type III domain containing 10).

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078657

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040861 False 1653 mRNA 0.53 2 370915 372723
TCONS_00042229 True 491 lncRNA 0.64 1 371564 372054

Neighbor

gene id symbol gene type direction distance location
XLOC_020660 ssu72 coding downstream 3346 359273 ~ 367569 (-)
XLOC_020659 tmem240b coding downstream 16323 349121 ~ 354592 (-)
XLOC_020658 necap2 coding downstream 23491 341990 ~ 347424 (-)
XLOC_020657 NA coding downstream 55535 313710 ~ 315380 (-)
XLOC_020656 CABZ01079179.1 coding downstream 76215 291091 ~ 294700 (-)
XLOC_020662 ora3 coding upstream 8420 381143 ~ 382955 (-)
XLOC_020663 CABZ01072989.1 coding upstream 14350 387073 ~ 392224 (-)
XLOC_020664 NA coding upstream 19896 392619 ~ 395900 (-)
XLOC_020665 dstyk coding upstream 99604 472327 ~ 506522 (-)
XLOC_020666 ccnd3 coding upstream 164994 537717 ~ 547760 (-)
XLOC_020646 NA non-coding downstream 269468 101082 ~ 101447 (-)
XLOC_020641 NA non-coding downstream 334799 27146 ~ 36116 (-)
XLOC_020672 NA non-coding upstream 287194 659917 ~ 697504 (-)
XLOC_020673 NA non-coding upstream 327490 700213 ~ 704907 (-)
XLOC_020675 NA non-coding upstream 360521 733244 ~ 735244 (-)
XLOC_020676 NA non-coding upstream 366577 739300 ~ 760886 (-)

Expression


Co-expression Network