LOC110493152 (LOC106561008)


Basic Information

Item Value
gene id LOC110493152
gene name LOC106561008
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61098791 ~ 61115991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567412.2
CTCAATGGTCAAACTCTGGACGACGTTCTTGCATTTAAAAGCCAAGTACTGTGGCTGTTATTTAATATTATGACACCGTTGAAGTGTAAGGGGACACCATATCAAGAAAATCAGATATTATTTCTCAGAGTGGACGGCAAGTGGCAGCCAGAGAATGGCTCAAATGTTGGTGCTTCTCTCGACGGCTGCTTTGCCTTTACGGATCGCAGTAAAACCTTGTGTACGCAGTTCAGTGGTGTCGGCAAAGAATGTATCTGTGCTGCCCGTCTACCGTGGCTGTTCTGTCAGGATTCTTGCACAAAATAAGTTGTCATCTCATGGATTATATTCATCTCATGGACTACTTTACTCTGCTGAGCCTCCAAAAGGGAAGGAATCACGTGGCAGGGGAGGCCGTCGAAGTGGCAGGAAAAGAGCAGGGGAAAATTGGTGGAGCCGCATGAAGAAGGGAGACATCCCATGGGATGAGAAGGAGTTCCGTGCCCTGGCAATGTTAGTAACTGGGATATCATCTGCCGCACTCTACAATCAGTTCAGTGACACAGCAAAGGAGATCACCTGGAAGGACTTTGTCCATCATTACCTTGGCAGAGGAATGGTTGACCGTTTAGTGGTTGTCAACAAACAGTATGTGAGAGTCATTCTATTACCAGGAGCTGATGAGAGCCAAGTGTGGTTTAACATCGGTAGTGTGGACACCTTCGAGAGGAACTTGGAGGTGGCTCACGATGAGCTGGGCGTGGAGTCCTCTCATAGGACAGCTGTTGTGTACAGCTCAAATCGTGACTGGACATTATTGATGCACGTGATCTCCACCCTGGGGCTGATTGGTTTCCTGCTCTTCTCCCTGCGACGGAGACCAATGGGAGGTGGTGATTGGACCGACTTCACCCAATCCAGCATAAGCGAATCACCAGCGAAGATGATGGACAACATAAACACCAAGTTCAAGGATGTTGCCGGCTGTGAGGAGGCCAAGCTGGAGATCCTGGAGTTTGTTAACTTCCTGAAGAACCCCCAGCAGTACCTGACCCTGGGGGCCAAGATCCCAAAGGGTGCTGTGCTCTCTGGACCTCCAGGCACAGGCAAGACCCTGCTGGCCAAAGCCACAGCAGGAGAAGCCAACGTCCCCTTCATCACAGTCAATGGCTCAGAGTTCCTGGAGATGTTTGTGGGTGTTGGGCCTGCCAGGGTGAGAGACATGTTTACCTTGGCCCGGAAGAACGCCCCTTGTATCCTGTTCATAGATGAGCTAGACGCGGTGGGCCGCAAGAGGGGCGGGGGAGATTTTGGGGGCCAGAGTGAGCAGGAGAACACTCTCAACCAGCTGCTAGTGGAGATGGATGGGTTCGATACCAGCACTAACGTGGTTGTCCTGGCGGGTACCAACAGACCGGACATCTTGGATCCTGCACTCATGAGGCCTGGTAGATTTGACAGGCAGATTTACATAGGCCCACCTGACATCAAAGGCAGAGCGTCCATCTTCAAAGTGCACTTACAGCCCATTAAACTGGACCCTGCTATGGCCAAAGACGGATTGGCCAGGAAGATGGCTGCCGCCACACCAGGCTTCACTGGAGCCGACATAGCTAACGTGTGCAACGAAGCTGCCCTAATCGCTGCTAGACATCTCAACCCACATGTGGAAGGAAAACACTTTGAGCAGGCCATCGACAGGGTCGTCGGCGGTCTTGAGAAGAAGACCCAGGTGCTGCAGCCCAATGAAAAGAAGACTGTAGCATACCATGAGGCTGGACATGCAATAGTGGGCTGGTTCTTGGAACATGCTGACCCACTGCTGAAGgTGTCCATCATCCCCAGAGGGAAGGGGTTAGGGTATGCCCACTACATTCCCAAGGAACAGTACCTGTACACGCGGGAGCAGCTGTTAGACAGGATGTGTATGATGCTGGGAGGACGTGTGGCTGAACAGGTCTTCTTTGAGAAAATCACCACAGGAGCTCAGGATGACCTGAAGAAGGTCACCCAGTCAGCCTATGCACAGGTAGTGCAGTTCGGGATGAGTGAGAAGGTAGGCCACGTGTCGTTTGACCTGCCTCAGCAGGGGGAGATGGCGATGGATAAACCTTACAGCGAGGCCACGGCAGAGCTCATAGACCAGGAGGTCCGAGACCTGGTGGACAGCGCCTACCAGAGGACCATGGAGCTCATTATGGACAAGAGGGAGTGTGTGGACATGgTGGGGAAGTGTCTCCTAGAGAAGGAGGTCCTGTACAAGGCGGAGCTGCTGGAGCTGCTGGGGCCACGGCCGTTTAAGGAGAAGCTGACATATGAGGAGTTTGTGGAGGGGACTGGCAGTTTTGAAGAGGACGCCAGCCTGCCAGAGGGCCTGAAGGACTGGAACCAGGAGAGGGGACGTAGCTGAGGAGCCTGCCCCAGTTAAGGAGAAACGGGACCAATAGGCAGGACATCCAGTGACTGGCGACCTCTTAACCTAAAACCTATCTCAGCACAACACGCATCACTTCAATCATGTAGCCTAGGCAGAAGGGAGGGTTTGGGTGGACTTAGCATAGTACAGTGTCCAGGGACCTATTTATCGGAGTTCAAAGCAAACTTTCAAGCCCAAATTCAGATCTTTCATTCCCATTTTTGGGGTAAGCCACATTTTACTCAAAGGAAAAATATGATTGACAGTGGATGCATTGATTTGCTCTTTTTTTAGGACTTTGATTTACTTCTCTCTCCACATATGTTTCATATGTTTGTCATAACTGAATCATGTACAGTCGGGTACAAAATGATTGGCACACTTGAtgaagatgagcaaaaaatacttTATAAAATAAATGCATAGTGAGCTATATTTTTATGGGACTTTTTTTATAATACAATTGCTCCCAGAAGGGTAATCAAAATTATTTGCACCCTGTTTTTCAATACTGTTGAATATCTCACCTAAGGGCACTGAACCTTTTTttcctaaaatgttttatgagattggagaacatatTTGGAGTGATCTTAGACTATTACTCCATACTGAATCTTCCCAGATCCTTGATATTCTTTGTCTGCCCTTATGGactcaattcaaaccacagattttttgaatggggttcaagtctggaTACTGAGTTGGCCATgtcaaaatgttgatttttgtggtcaattaaccatgtTCTTTTGTGGaatttgatgtgtgcttggggttattgtcttgctggaagatccacttgtggccaagttcaagcctcctggcagaggcagccaggtttttggctaaaatgtcctggtactgggtgaATTTCACTGCACCATTGACCTTAATATCTTACACAAGGTATGGGGTTCATTCTTTTGACACCAAAGCACCACGGGTGTGCGTGGCCAAACAGCCTCAGTATTTTTATCttttctcatctttatcaagggtgcctaTCATTTTGGACCTGACTGAACATCTGCACCATAAGACCAGATTGTTTTGATATGTTCAGCTATTTATTTAAAAAGGGACTTCCTCCCTGTAAAATGAAATTCACAACTGTATTTGTTTCCTTCCCTCAAATGAAGGCTACATTTCTAATCTTGTTCATCTTTATCTACCAATGACAGAGTTACTGGTTATGAAATATGCACTGCTTAGAGTATTCATATCGTAGTTCATCAAAATGCCAGAAATATACTTCCTTAGATGTGTGGCCATTTGCACTGCCTCCATCTCTCAGGCTTGCAATTGTAGGGTGTGAaagcttaaagggatacttcaggattttggtaATGAAGCCCTTCATTTAGTTTCCAGAGTCAGATTAATTGTCTGATTTCAGTTTGAAaaaagttgctaactagcattagtgcaATGCCTTGAAGTCTATGGTAattgctagcatgctagtagatttcatagacttccagtcattgcgttaatgctagttagcattggctcgcgaaactacctctaacttctttCATACTGGATGCAAAGACATAAATGGTGTCCGTGAGTTCATCAAACTCCGGCGACGTAGACAAAGGGCTCCGTTGttcaaaatcccgaagtatccctttgaCCACAAATTATAACTGACTATGCTCAGCGAGTTTGTTTTTAAGGATGCTATGCTGCTCCAGGAGTGCGCTACTGTACATTTTTCAACAGCACATCTACAGAATTATAAACAAGTTGCTACCTCACTTCAAAGCGATGTATTAAACTCAATTGCCTTCGTATAGGTTTGTGACAATTTCCTGTATGTCAGTACTATAAATGTTTCCACCATTTTAACTGATCAGCACGGAAGATTCCTAATAGTTTATAATTATTGATTTAATactccagtattgtaaatatgtttGCATAAAATGTATGTGTTGCTGGTGGTTTGGCTTGTGTGCACTTACCACTTTAACAGGCAAATGTACCTTATGTTCTCCAATTACTGGGGACAAAGTAGTTTTCCATTTGGATTATAAATAAGATGCTGTGTATGAAGGCAATGGGTATACTACCATGTATAAAGCATGTTTTTGTTTACTCTGCTTACTGCCACCAACCATCTGCTTGTAATTTCACAACTTTTAATGTTACTTTCAATAAACTGTTTGCATTTGA

Function

NR:

description
AFG3-like protein 1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08956 AFG3; AFG3 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567412.2 True 4582 mRNA 0.46 16 61098791 61115991

Neighbor

gene id symbol gene type direction distance location
LOC110493151 LOC106561010 coding downstream 38818 61044253 ~ 61059973 (-)
zgc:172145 LOC106561011 coding downstream 199271 60888793 ~ 60899520 (-)
LOC110493125 myod1c coding downstream 215549 60881396 ~ 60883242 (-)
LOC110493006 LOC106561012 coding downstream 248228 60835157 ~ 60850563 (-)
LOC110492911 LOC106561018 coding downstream 471318 60625142 ~ 60627473 (-)
LOC110493153 LOC106561006 coding upstream 10107 61126098 ~ 61172031 (-)
LOC110493154 LOC106561003 coding upstream 74689 61130321 ~ 61232604 (-)
LOC110493155 LOC106561004 coding upstream 117042 61233033 ~ 61250701 (-)
LOC110493207 LOC106561002 coding upstream 153402 61269393 ~ 61282546 (-)
LOC110493186 mlkl coding upstream 176096 61290149 ~ 61303507 (-)
G167922 NA non-coding downstream 1200 61055844 ~ 61097591 (-)
G167845 NA non-coding downstream 161562 60936974 ~ 60937229 (-)
G167844 NA non-coding downstream 163056 60935472 ~ 60935735 (-)
G167842 NA non-coding downstream 168924 60929652 ~ 60929867 (-)
G167706 LOC106561017 non-coding downstream 358440 60695263 ~ 60740351 (-)
G167938 NA non-coding upstream 3840 61119831 ~ 61123748 (-)
G167994 NA non-coding upstream 79433 61195424 ~ 61195689 (-)
G168009 NA non-coding upstream 114362 61230353 ~ 61230592 (-)
G168024 NA non-coding upstream 143078 61259069 ~ 61259943 (-)
G167866 NA other downstream 123770 60974762 ~ 60975021 (-)
G167723 NA other downstream 419750 60678723 ~ 60679041 (-)
LOC110492890 LOC106561126 other downstream 549612 60537619 ~ 60559746 (-)
G166877 LOC106613263 other downstream 583269 60515226 ~ 60515522 (-)
G168021 NA other upstream 138521 61254512 ~ 61256015 (-)
G168078 NA other upstream 374443 61490434 ~ 61491671 (-)
G168141 NA other upstream 399246 61515237 ~ 61515656 (-)
LOC110493507 LOC106560984 other upstream 2030783 63146769 ~ 63224837 (-)

Expression


Co-expression Network