LOC110493153 (LOC106561006)


Basic Information

Item Value
gene id LOC110493153
gene name LOC106561006
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61126098 ~ 61172031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567421.2
TAGAGCGCGGTCATTGATTCCAGAGTGAGCAGTCTCCTCTCCTTTCCGCTCTGTTAGGGTTGCAGAGAGACACTGGGAAGGAGAGATTAGAATAAGAGAGTCTCCGCTGATTCTGTTTGTTTGAAGgcattcccccccctctctcgctctctctctccatctttctctctctctctctttctttgttgtctcactctctctctcttttctctcttttctctctctctctctctctctctccctctctccctctctccctctgtctccctcagtCTGGTACCCTGTTCAAGAGTGAATACCACAGCCTAAGACATAGGACCATGACTGGGGAACTGAGGCCAAGTCGCCCAAAGGCAGGAACCAAGAGAGCCAGCAGTGAAGCCTTCGGATCTGACTATGACCTGGAGTATGACAGCTATCCAGATGACCTCTACAACAGGGTGTTTGACTACCAGCGTGTCCCAGCCTCCATGATGCCAGCCCCAGTGGAGCCCAGCCCTTTGAAACACTCCCATggcccctcttcctcctccggcCTGCACCGCTCCagagacagactacagggcaAGAGGAGTACTCAGCGCACCGGCTCTTCCAGCAACAGGGCTAAGTtgAAGCTGGCAGAGCTGTTGGCCATAAAGAGTGAGTTGACTCTGATCAAGGTGCAAATTGATGGACTGCTGGACAGTGTGGAAAAGATGGACAGACGGAGAAAAGATCACTCAGATTCACCTCTGACCGGGGAGGGCAGTGTGTCGGACTCAGTGAGCAGTCTGGACGACTCCCCTGTCAGCCTtcaccacagacagagagagagcccagAGCCAGGAGAGGCCAGCGATGAttaccaccagcaccaccacaggATACATAACCATCATTCTGATCTGGAAGATAACATGTGAGGAGATCAGGTATACATGGCTAATAAAGACTCAATGAACCCAATGACAGCAGCACAGCGACATGGAGAGGGATTCAAGTGAAGAGGAGTGATCATCTCTGATCACAGTCAACTTGGACAGAACCCTCAAATACACTGTACCTTACAAAGTTGGATCTTCAGTGAATCTTTTCTTTTGATGAGTAAGAAATATTTCCCTGGTTACCCTCAGTTCCTTTCCTACAGTAAGCTTCTGTCCACCTTCGTGTCTCCAGCTCCCCTTTGTAACAGGTTCCTACAGACTTATGGACTCAACAAAATATggcagctttaaaaaaaaatgtgtggtcTCTTGAAGAATGGGTCTGACAACTGATAtgcatcacacagacagacacacccacatttatacaactacagttgaagttggaagtttacatgcacttaggttggagtcattaaactcgtttttcaaccacttcagaaatttcttgt
>XM_021567425.2
TAGAGCGCGGTCATTGATTCCAGAGTGAGCAGTCTCCTCTCCTTTCCGCTCTGTTAGGGTTGCAGAGAGACACTGGGAAGGAGAGATTAGAATAAGAGAGTCTCCGCTGATTCTGTTTGTTTGAAGgcattcccccccctctctcgctctctctctccatctttctctctctctctctttctttgttgtctcactctctctctcttttctctcttttctctctctctctctctctctctccctctctccctctctccctctgtctccctcagtCTGGTACCCTGTTCAAGAGTGAATACCACAGCCTAAGACATAGGACCATGACTGGGGAACTGAGGCCAAGTCGCCCAAAGGCAGGAACCAAGAGAGCCAGCAGTGAAGCCTTCGGATCTGACTATGACCTGGAGTATGACAGCTATCCAGATGACCTCTACAACAGGGTGTTTGACTACCAGCGTGTCCCAGCCTCCATGATGCCAGCCCCAGTGGAGCCCAGCCCTTTGAAACACTCCCATggcccctcttcctcctccggcCTGCACCGCTCCagagacagactacagggcaAGAGGAGTACTCAGCGCACCGGCTCTTCCAGCAACAGGGCTAAGTtgAAGCTGGCAGAGCTGTTGGCCATAAAGAGTGAGTTGACTCTGATCAAGGTGCAAATTGATGGACTGCTGGACAGTGTGGAAAAGATGGACAGACGGAGAAAAGATCACTCAGATTCACCTCTGACCGGGGAGGGCAGTGTGTCGGACTCAGTGAGCAGTCTGGACGACTCCCCTGTCAGCCTtcaccacagacagagagagagcccagAGCCAGGAGAGGCCAGCGATGAttaccaccagcaccaccacaggATACATAACCATCATTCTGATCTGGAAGATAACATGTGAGGAGATCAGACTCAATGAACCCAATGACAGCAGCACAGCGACATGGAGAGGGATTCAAGTGAAGAGGAGTGATCATCTCTGATCACAGTCAACTTGGACAGAACCCTCAAATACACTGTACCTTACAAAGTTGGATCTTCAGTGAATCTTTTCTTTTGATGAGTAAGAAATATTTCCCTGGTTACCCTCAGTTCCTTTCCTACAGTAAGCTTCTGTCCACCTTCGTGTCTCCAGCTCCCCTTTGTAACAGGTTCCTACAGACTTATGGACTCAACAAAATATggcagctttaaaaaaaaatgtgtggtcTCTTGAAGAATGGGTCTGACAACTGATAtgcatcacacagacagacacacccacatttatacaactacagttgaagttggaagtttacatgcacttaggttggagtcattaaactcgtttttcaaccacttcagaaatttcttgt

Function

NR:

description
RNA-binding Raly-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567421.2 False 1378 mRNA 0.49 8 61126098 61172031
XM_021567425.2 True 1359 mRNA 0.49 8 61126098 61172031

Neighbor

gene id symbol gene type direction distance location
LOC110493152 LOC106561008 coding downstream 10107 61098791 ~ 61115991 (-)
LOC110493151 LOC106561010 coding downstream 66125 61044253 ~ 61059973 (-)
zgc:172145 LOC106561011 coding downstream 226578 60888793 ~ 60899520 (-)
LOC110493125 myod1c coding downstream 242856 60881396 ~ 60883242 (-)
LOC110493006 LOC106561012 coding downstream 275535 60835157 ~ 60850563 (-)
LOC110493154 LOC106561003 coding upstream 18649 61130321 ~ 61232604 (-)
LOC110493155 LOC106561004 coding upstream 61002 61233033 ~ 61250701 (-)
LOC110493207 LOC106561002 coding upstream 97362 61269393 ~ 61282546 (-)
LOC110493186 mlkl coding upstream 120056 61290149 ~ 61303507 (-)
LOC118941125 NA coding upstream 134879 61306910 ~ 61361520 (-)
G167938 NA non-coding downstream 2350 61119831 ~ 61123748 (-)
G167922 NA non-coding downstream 28507 61055844 ~ 61097591 (-)
G167845 NA non-coding downstream 188869 60936974 ~ 60937229 (-)
G167844 NA non-coding downstream 190363 60935472 ~ 60935735 (-)
G167842 NA non-coding downstream 196231 60929652 ~ 60929867 (-)
G167994 NA non-coding upstream 23393 61195424 ~ 61195689 (-)
G168009 NA non-coding upstream 58322 61230353 ~ 61230592 (-)
G168024 NA non-coding upstream 87038 61259069 ~ 61259943 (-)
G168033 NA non-coding upstream 96535 61268566 ~ 61269018 (-)
G167866 NA other downstream 151077 60974762 ~ 60975021 (-)
G167706 LOC106561017 other downstream 385747 60695263 ~ 60740351 (-)
G167723 NA other downstream 447057 60678723 ~ 60679041 (-)
LOC110492890 LOC106561126 other downstream 576919 60537619 ~ 60559746 (-)
G166877 LOC106613263 other downstream 610576 60515226 ~ 60515522 (-)
G168021 NA other upstream 82481 61254512 ~ 61256015 (-)
G168078 NA other upstream 318403 61490434 ~ 61491671 (-)
G168141 NA other upstream 343206 61515237 ~ 61515656 (-)
LOC110493507 LOC106560984 other upstream 1974743 63146769 ~ 63224837 (-)

Expression


Co-expression Network