LOC118941125


Basic Information

Item Value
gene id LOC118941125
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61306910 ~ 61361520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037415.1
tgataataataataataattgaaataAAAAAGATATACACacagatgtacagtatatatccaTAAACATATTCACAGGACACTCAACTTATCTCTTATATCTTGTCCTACATTATCTATTTTCCTTCACAGTTGTGAATTATAAAGATTGTAATGATATTAATAGGCAGTCAACCGAGCAAGCTTTCTACATTGACACCTTTGAAATGACTGGCATTTGGGGGAGCAAGAAAtgtgtgtaaaatgtgtgtgtgccatatgtgtgtgtaatatgtgtgtgtgatgtgtgtgtctttctgtctgtctaaaCTTGAAATGTTATGCTGCCATCCCAGAAGAGGGCTCTGTTCCTCGACCCAATGGGGGAAAGTGCCGGAAAGATAAAAAGATGCCAGGTCAAGGTCATTTTACAATGGAATGAATAGTCTTCGAAATGCTATGCTGTTATTTACCTCTATATTGTAATCAATAAAGTGTTTCAAAATGCTGTACTTGTATTAACATATATGTTCAGATCATtcctgagagagaaggggggtaaaATCTCCAAATGGGcgtgtggtacccttcctcacccaTGCCAACAAGAGGCTACTTCTTGTGGAGTCTTTGCCTTGAAAATGATCTGAGCCAAATGTGCCACTTCTGTGGGGAGGTGGACAATAATGAGGGAGGCTGAGTAATTGCTTGTTCACTTCTAAAGGCACCTTTTTCCGAGTACGAATTTGTATAAGCAGTAATATTTCTAGAGGTAGTATCGTCTGCTTTGTCTGGTAATTAAATAATTGTAATTCAAGAAAATCTATTTAATGTTTTAAATATATTAAACATTTTTCATCATAAATTTCAGATTGGTTGTGACTGCTGCCCACGATGGTTTAACCAGTCCTGTATGAAAACCATCCCATAATTGGAGGATTATGTCTGCGCTGCCTGTCAGGACTAGGTTAGCCTTGAGTTCCAGGCGACGGTATCACCtggaaaactttccataaaaagtgGACTAAATGTTCAGTCAAGCTGTTGCAGCTTTCCAATATTtgtttgttatttattgtgtttttatatttgaTTTATTGTCATTTTATATCTTATTATGCAAAGATCGAAATATGTGTTTCTTATTTAATGTTTGTTTACAAACTTCACTTTCTGTGATGTTTTTGTGTTATTGGGTGATAATATTTGTGTATTATCTTTATTTTaaacattacaaaatgtttctaaaataaatgtttatgttTCTTTATACT
>TU191393
actgctgaatggagTGCTCACACGACACCCAAACATTAGTTTGTTTATGTTTCTCCAACTGTACCATGGTAATGAATGTGTCCGGAGTCgggaagagacagacagcctgcatttctcagccagtcgaaatcatgaatcacctgctatcatttttatggatatatacaaagaaatgtcaattgaaaaaaggGTTATGCTGCCATCCCAGAAGAGGGCTCTGTTCCTCGACCCAATGGGGGAAAGTGCCGGAAAGATAAAAAGATGCCAGGATCATtcctgagagagaaggggggtaaaATCTCCAAATGGGcgtgtggtacccttcctcacccaTGCCAACAAGAGGCTACTTCTTGTGGAGTCTTTGCCTTGAAAATTGGTTGTGACTGCTGCCCACGATGGTTTAACCAGTCCTGTATGAAAACCATCCCATAATTGGAGGATTATGTCTGCGCTGCCTGTCAGGACTAGGTTAGCCTTGAGTTCCAGGCGACGGTATCACCtggaaaactttccataaaaagtgGACTAAATGTTCAGT

Function

NR:

description
PREDICTED: sentrin-specific protease 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037415.1 False 1252 mRNA 0.35 2 61306910 61308669
TU191393 True 541 lncRNA 0.46 5 61307147 61361520

Neighbor

gene id symbol gene type direction distance location
LOC110493186 mlkl coding downstream 3403 61290149 ~ 61303507 (-)
LOC110493207 LOC106561002 coding downstream 24364 61269393 ~ 61282546 (-)
LOC110493155 LOC106561004 coding downstream 56209 61233033 ~ 61250701 (-)
LOC110493154 LOC106561003 coding downstream 74306 61130321 ~ 61232604 (-)
LOC110493153 LOC106561006 coding downstream 134879 61126098 ~ 61172031 (-)
LOC110493232 LOC106561001 coding upstream 8096 61316765 ~ 61340525 (-)
LOC110493250 nfyb coding upstream 61638 61370307 ~ 61415302 (-)
LOC118944178 NA coding upstream 62419 61371088 ~ 61371201 (-)
LOC110493274 NA coding upstream 71879 61380548 ~ 61382206 (-)
LOC118936773 NA coding upstream 108831 61417500 ~ 61428467 (-)
G168033 NA non-coding downstream 37892 61268566 ~ 61269018 (-)
G168024 NA non-coding downstream 46967 61259069 ~ 61259943 (-)
G168009 NA non-coding downstream 76318 61230353 ~ 61230592 (-)
G167994 NA non-coding downstream 111221 61195424 ~ 61195689 (-)
G168099 NA non-coding upstream 107994 61416663 ~ 61416891 (-)
G168108 NA non-coding upstream 122044 61430713 ~ 61431023 (-)
G168129 NA non-coding upstream 186563 61495232 ~ 61495725 (-)
G168132 NA non-coding upstream 189738 61498407 ~ 61498825 (-)
G168133 NA non-coding upstream 199465 61508134 ~ 61509299 (-)
G168021 NA other downstream 50895 61254512 ~ 61256015 (-)
G167866 NA other downstream 331889 60974762 ~ 60975021 (-)
G167706 LOC106561017 other downstream 566559 60695263 ~ 60740351 (-)
G167723 NA other downstream 627869 60678723 ~ 60679041 (-)
G168078 NA other upstream 181765 61490434 ~ 61491671 (-)
G168141 NA other upstream 206568 61515237 ~ 61515656 (-)
LOC110493507 LOC106560984 other upstream 1838105 63146769 ~ 63224837 (-)
LOC110501772 LOC106560973 other upstream 2650854 63958607 ~ 63963969 (-)
tmem117 LOC106573612 other upstream 2857294 64102056 ~ 64170220 (-)
LOC110493282 LOC106560998 coding upstream 74695 61436215 ~ 61464302 (-)

Expression


Co-expression Network