LOC110493232 (LOC106561001)


Basic Information

Item Value
gene id LOC110493232
gene name LOC106561001
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61316765 ~ 61340525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567503.2
GTTGCTACGTTGCGCAAAAGGGCTGAATACTAAACGGTGTGGATCATTCACACAAAGAGAAGTGACTATATATGTTATGCCAGACTGTATAGACAGAGGTATCTGAGTTAGTGACCGGCAGTTGCTCCATGGACAATCTCGGCTTGTTACTTTGTAGTTAAGTCTGTACTGAACTCACAAGCTCCGGTATCTGATATATTATTGAACCAATATTTGTTCGACACAACGCGTCCATGCACGATGATGCATACAGAAATGGTTTCATTCAAGGCAGTAGGCGAAACTGAGGAGACCAGGAGAATGCAGACCTATACCTGGACCCAAAGTGGACTGGATCGATCCGTCGCTGGACAATCCTCAAGTCCCCAAGTTACCAGTGGTCAGATGAGTGAGATTCCAAGCAGCTATTCTCGTCAATATGGGCCAGTCAGACCAGCTGTCCTGTATATAGAAGGTGGTCAATGCCTACCACACAGCGGACAAGTAACCAGTGGAGGTTACTGGAGTGGACCGACCCTCAATCAACAGGCTTCAATGGTTAACATAAACTCATCTCAGCATTCACCCACCAGAGAGCAAGTTCTGATGGGTACTAGTCCCCTTTTGACATCACTCTGGACTAACAATGCAGCGGCTCCTCAATCAACTGGTGTTACATCACAAAGTGGAAACCATCACACCTTGCCCGGAAGGGTTAACAGTGTAGCTCTTCCCAATTTCCAGCAGGGACAGGGGTTTTTGGGTGTTAAAAATAACAATCCACAGAGGCTCGTTAAGGATGGTCAGGGTGCAACCATTCACTGCCCCCCTCATATTAATGCACCACTGAATGCAAATGTTATGTATCATATAAGCCCAGCGAGTGGCAGTCAGCAGCTTGTACTTGGCAGACAAGATGGGGCCTCCAGTGGTACCTCTGCTTCTCTTGCAATGGGTAGGAGCCCCAACCATGTAAATCATGTAGTGAGTGGGCAGGATTCAAGAAGGATAGCAGTTCAAGCTCCTCATCAGGGAAACCCACAAACACCAAACTCTTTGCAAAGTGCACAGGAAACAACATATAACCAACTGTTGTATTTACTTCAAAATCAGAACAATGACAGCAGGACTGAGATGAACAGGGTTCAACATGGAGCACCTGTCCACACTGGCTCATCAAACCACAGTCAGATGTATCCCTCTCAACTTCTCACTGGCATCAACAACCAGGTCAATGTACCAAATGCTGCAATGGGAATGCCAATGCATAACATTAGCCAGAATCCTCAGTACAATGTACAAAGTACAAAGTATAACCCCCCTTTTAATAATTCTCCAAGACATGTCCCCATCTGCCCTAAAAGCCTTCCCATCCCACCACAACAGAACAGACTCCCATCTTATTGTGCAAATAATAACAGTCAGTTAGGGCCCATTGGAAATAATGCACACCATGCCTCTCATCCTAGGCTCCATATCCAAGGCACAGTCCCTACCCTACATTACAAGCCAGACTGCACCAATATTCTGGTATCCAACACTGGACCATCTCCATCTGTGCCAAACTATAGTATACAGTCCTCAGTCCAGCACAACCGTGAAACCGCGCCTCCACCATACCCAGTCCAGCAGATACGTAAGTCCGCGCCTCCACCATACCCAGGCCAGCACTCCCATGGGCCCGTCCTGAACAAGACAGAACATGTGGTTGGGGCAGGAGCACATTTTCTGCAACACTTGCCTAACCAAGGCGCAGCCCCTACCCTACATTACAAGCCAAAAAACAATTATGTTCAGTTATCCAACACTGGACCATCTTCATCTGTGACAAACCATGGTATGCTGTCTTCAGGCCAGCGAAACTGTGAGTCTGTGACTCCGTCACACCCCATAAGACAGGGCTATTACATAACAGTAACAGAGGACGAAAGTGGAAATGGATTTAGAACAGAAAATTGTATTTTCATAGGAGATAAACCTAATGAAAGTGCTCTGGTCTCGCAAGGATCATCTGCAAGTAATGCCCCCTCTGTTCTTACGGCACAGAAGGCCATTGCAGTTGTACAACCACTATCGCAGTGTATGCAGACAAACACACCTCTACATGTGTCTGATAAAATCTCCTTGACCACCCAAGCTATGTCTTTCTTAACAGGTGTTGGAAATGTGAGCAAACCTGGGGAACATTCTTGTGTCCAAAGTCCATCACAAGGCCAAACAACCCTTGCTCGATCTGCTTCTTTGACAAATGAATCAGAACAAGAAGTCCCCAGGATCAGACTAGAATCAGGGGCTGATAAAACATTGACTCAGGGTTCAGAAACTTCTGATGTTGAAATGGCCAAGACATATTCATGTTTTAAGTCTCAACGGTCATTATCAAATGGGTTACGTGCAGAGAAATTTGATTCTCAACCATTATCTAATGTGGAATGTCAAGCCACTCTGAGAAAAGAGTTAGCTGACACAGAAATGACCACTCATGTGAATGTTAACCAATTGAGTGAGGAAACAAATGAAAAAGTCGATTCCGATGAGGACATTTTTGATTTGTCCTCCATTCCTGTAATCAAATGGACCCTTGGTAAATTGAAGGAGTTGGTAGATACTGTGCAACGTCAAAAATGCACTGCCACACCAGTTGAAAGCAAAATACTAAGCCTCTATTGGGATGGAGATGGGCCAAAGCTTATGGATGCTGCAAGATCTGGTATGTTACAAAATATAATGCAAGAGGTTAGATCTGTGTGTGGCGACGATGACGATATGTCATCACAGTCTGTCATATTTTCACAAGCCAGGCGCAAAAACTGGGGTCAAGTTGAAGAGAAATGTGCTATTCTTAAACATGATTCTGTTCACCCCGAGTTCCCGGCACAAGAGTCATCATGGTTGAACACAAATAAGCAGCTTGATGACATAGACAAGGAGTTTGGATTCCCATGGTCACTAAGATATGACCAAAAGACTCTTCAAAGAGGAGATGAACAACCAAAACTGATTTGTACCGAAAATGAAAAATCTACAGCCTCTGCCATTGACATGCAGACTGAGGTCACTCAGGCGACGAGACCAACACCCTCTGATTCTGATGCTAAAGAAATTCAAGGGTCAGGTTTGGCACACAGTTCCACCCAGACCCTCTCACTGGTTAAGAGAGAAAAAGCAGGTATCATTTTTAGTGACCCATTTTCCTCCCTGGAGATCAACGTGCTGACACCAGAAGAGGCTTTGCAGTTTTTCAGTGGGCAGCTACTACAAGATGAAGTGAACGAAGACCTGTTGGAATTGCCAATGGAAATGGATGCGGAGCTGATTGAGTTGAAAGATTACTCAGTGGAGGATAAATCATCTGAGAGGGTAGATGTGAAGTTGACTGATTTAAAACTCAAAAACAAAGGGGATGTCCAATCAGAAGATTACTGTTGCCTCTCTCGTTGGATGTCAGTGTTCAGTGGGTCCACCAATTCTTCGTCCTGCAAATGCCAATACAAGACGAAATTGGGTTCAGCAAAGGCCACTCTGAATGCGACGGCATTGGTTGAGGTAACATTGTCTGTTGAACCCAGCACAACAAAAGCAGAACAAAGGGAATGCGTGcatttgtgtaaatcaaatggcACAGCAGAAGAAAAGCGTGAAGAGAATCCTGTAAAAAATGTGAATCCTCAATCTTGGAAATCTACAGGCATTGAAGAATGCCAAACAATTGTCTTGTCTGATAGAAAATCTGAGACTGCTCACATATACACAAATGGGGTGAAGAGCTTGCCTTTGTCAAAAGCCCCAGCACTGCAACTCCCCATCAACCACACAAACATTGTTGAAATTGAAGAGGTCTTCTCGCGTTATGAAGACTTAATCAAAGTAGCCACCTCAATGTCGGAGCTAGTTTGGGACGATGTACAGCCAAAGCAGAAACTACCAGGTCCGTTCCAGAAACATGTGGAATGTGTACAAGAACTTGGTGTTATTTTGGAAGAAGGAAACCCTAGAGGTAGTGAAGTCGTTCCTACAGCTCCCATTCCTACTTCTAATCTGCAACCTGAAGTAACAGACAAAATCGGTTTCCTTACATCACTTTCCTTGGCACAAAGATGTCACAAACATCTATCTCCTAAAACAAATTGTAGCTACAAGGTTAAACAAAAAGGGGTTGGACTCAAGAGAAGATGTGTTGAAAGTCCTCATTCAAATGTGCCtgtcccaagaaagcaaaggaaaATGAGGGACGGATTAGGTCCCTCCTTTCACCTTGTTCCTGAGGTCAACttgactgatgatgatgatgaagatttTGAGCCCCCCAATACAACTACTTCTAAGTCTTTGGAAGAAGAGAAACATTCAAAAGGTAGCAATCTCCAGAAGCCAACAGAACATGGAATTGGGAACAACATTTGCAGGGTTGGCACAGTAAGTCTAGCCTTGTTTGGTTCCACGCTCCAACGCAAGGACCATAATGCTTCTCGAGCCAGACCTTTTGCAGACAATGCTCCAGCACCTCCTGTAACCCTCAGTGTGAATGTCAACTCCTGGACAACGGAGCCCTCCGAGACCAGTCCTCCAGTGGAAAGCCCAATCAAACAATGGATCTTAAGCGAGTGGAATAATAGTTTTATCCCGACAAAGACAAAGTCCAGGGGCAAAGTGCCAAGACTACAAAACAGAAGAGGCGTTGCTCCAAAAATGATTTGTGCTGAAATGGCTAAAAAGATTGTTGCCCTCACCAACACAGATGGAGGTGCATTATCCTCTGAAAGGCGAGCCACACCAGAAAGAACTGTAAAGGCCAAGCAGACTTTGCGGCGCATTGAAAGAGAAAGAATCTTAAGCGGCCTGAAACTCAGACTGAAGAAATCTAGGATTGAGGCAGTGCCATCCGGTATCCCTGATATAGTGGAAAAGGGTAAATATGAAATCGGAAACCCTGCTTCTTTGCCTCGTGAGGAGAACAGTCTTATGTTTAGTGTGCTGCCGGAGTCATTCAACTTCAAAGAAGTCATGGACCCTCCGACACAGACAGGTTCAATGAATGACATGGCTGGTCCAGTTGCTGTGAAGGCTGAGAATCCTAAGGCAATAGTCCAAAAATCCAAAGGTGTATGGTCTGTTGGCATTCAGAAGAGATATTGTCCTCTCACCTCTTTGACCATTAAAGTTCCCAAGACTTCCTCCACCACCTTCCagaagtttcagaagaaattcAAGCAGAAGAAGTAGGCCTGGCAGCTGACCCACGACAAATTGTATTGCTTCCAGTTATGGACTGGGGGAGTGGAGTGAGGACTGTCGGATGACAATCTGATTCTTGTACCTTGTTTCCCATGGAAATATATGTACAATTTTTGTTTTTAATGACAAATGTTCATAACCAATGTATTTTCTTTGGGAATGCAGAAATTGACCTCATTGTGGTAAGGTTGGGCAGCTCATAATACAGTTATTATTTACTGTAGTTAGCGTTTACATTCTTAAGTGACTGAGAATTTATCTGACAGTGTCCTCTCTACCTCAGGCCTGACAGGTGTTGGTTACACTTTTCTTGGCTCTGTTATTTACTTAACAAATAAGGAACACTCAATGTGCACTTATAAATCAGAACAATTTTAATCAAAATACAGCTGTAGACAGAAgtcaaacatcacacatacaaCTGATGTCTCTCCTGAGTTCTGCCAAATAGGAAAAGTCCAAGTTGCTTTTAATATGCTTGCAGTCAACCCCTAGTGATGTAAATGCCTACGTCATTACCTTCTTCTCATGAGTCAAAGTTTATGCATGCACAGCTATTCAAACAATAGTTCCAGTGTTATCTAAAGGCTCAGCAGTAAATGCCCACTCCCCAAGTTGATTTATGGTGGTATGTCTGACTCGTCTCTTATCTCTTTCACTCCCCTGCAGGGTTCTGTGTCTATGAATCTCTTATATTTGAGGCACTTTCTCACAGACACCTTGTTTTGACTGCAATAACTCACATCTCTCAGACCGTTTCTTATAAGAAGCAGAGACTAGAAAATAACTGGAACAATATTACACCTTATAATGCACatatattgttaatctgtagtctaggaccctataaatgtaaggGGGAGGGCTCTTATAAcccttccccttctattaatacaacctAAGCATAACCAATTATTATtatacatcaaacatttggtgCAGCCCAAGTCATGACCCCAAGTTGACCCCATCACAGGCAACATTGCGAAACTTAATCTAATTTAAAAACCCTAAACTAAAGTTTTGTGTGTCATTGGATGGCTGTTTTTGTAATGTTTATTTTCTTGTCAGTGTTGTAGctgacatttttggggggtaaacAGTATTTTATGCAAACCTCATGTTTACTGTTTTGAACTATGCAAAATTGACTGCGGTTTGTATGAATTTGTAAGATATCATTCTGCCCACCTCTCTACTGTTCCCTTTTACAATCTTATAACAAGTGGGTACCTTACCAATAGTTATTTTTCTGGCTTTTAAATCGATTCCGTTTGTTGACGCGGGATGAACAGTATTGTATGATTTAGAGATCCTAAGCCAGCTGAAACAAGGTTGCTTTGCAGTATTCTGGATGCATATAGCAGGAAAACTATGTATTTGTTCTACCTAGTGTTATTTCTTTATGTTGGTATATGTTATTTGtttctataaaaaaaatgtacactTAAAAATATATTGTCAGCAGCATCCTTCA

Function

NR:

description
uncharacterized protein LOC110493232 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567503.2 True 6691 mRNA 0.43 4 61316765 61340525

Neighbor

gene id symbol gene type direction distance location
LOC118941125 NA coding downstream 8096 61306910 ~ 61361520 (-)
LOC110493186 mlkl coding downstream 13258 61290149 ~ 61303507 (-)
LOC110493207 LOC106561002 coding downstream 34219 61269393 ~ 61282546 (-)
LOC110493155 LOC106561004 coding downstream 66064 61233033 ~ 61250701 (-)
LOC110493154 LOC106561003 coding downstream 84161 61130321 ~ 61232604 (-)
LOC110493250 nfyb coding upstream 29782 61370307 ~ 61415302 (-)
LOC118944178 NA coding upstream 30563 61371088 ~ 61371201 (-)
LOC110493274 NA coding upstream 40023 61380548 ~ 61382206 (-)
LOC118936773 NA coding upstream 76975 61417500 ~ 61428467 (-)
LOC110493282 LOC106560998 coding upstream 95690 61436215 ~ 61464302 (-)
G168033 NA non-coding downstream 47747 61268566 ~ 61269018 (-)
G168024 NA non-coding downstream 56822 61259069 ~ 61259943 (-)
G168009 NA non-coding downstream 86173 61230353 ~ 61230592 (-)
G167994 NA non-coding downstream 121076 61195424 ~ 61195689 (-)
G168099 NA non-coding upstream 76138 61416663 ~ 61416891 (-)
G168108 NA non-coding upstream 90188 61430713 ~ 61431023 (-)
G168129 NA non-coding upstream 154707 61495232 ~ 61495725 (-)
G168132 NA non-coding upstream 157882 61498407 ~ 61498825 (-)
G168133 NA non-coding upstream 167609 61508134 ~ 61509299 (-)
G168021 NA other downstream 60750 61254512 ~ 61256015 (-)
G167866 NA other downstream 341744 60974762 ~ 60975021 (-)
G167706 LOC106561017 other downstream 576414 60695263 ~ 60740351 (-)
G167723 NA other downstream 637724 60678723 ~ 60679041 (-)
G168078 NA other upstream 149909 61490434 ~ 61491671 (-)
G168141 NA other upstream 174712 61515237 ~ 61515656 (-)
LOC110493507 LOC106560984 other upstream 1806249 63146769 ~ 63224837 (-)
LOC110501772 LOC106560973 other upstream 2618998 63958607 ~ 63963969 (-)
tmem117 LOC106573612 other upstream 2825438 64102056 ~ 64170220 (-)

Expression


Co-expression Network