LOC110510683 (LOC106560954)


Basic Information

Item Value
gene id LOC110510683
gene name LOC106560954
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61525283 ~ 61535728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952487.1
gtcttacctggttaaatacaggcaAAATCAATCAATATTGGGGTTTCGGGTAGAGGTAGATTTGGGATtgggtgtttgtacacatgaacTTCCTCTAAAAATGGCTCTTTTGTGGCTCCTCCCTTTCAGGTGCTGTGTACGTGTAAAGAGTACAATCGCTACAGTAGCTACATCAAGTCAGTTCAGTTGCTGTGGGAGAAGCAGTGCTGTGCCCAGCAGaaaatGCTTTTGAAGCAGTTCCTAGTCTTGCAGCAGCAAGGGGAGGTTCCGTCCCACATTTCACTGACGGATTTTAGAGATTGGCTCATTGCCAAGGGTAGAAGCTACTTCAAGAACACGTTTCAGAGTGAAATGGAAGAGGGGAAGAACCTTCACTTGGCCGAACTGGCTTGGGATGTGAAACGACGCCTCAGGCTTAAGGAGCTGGAAAGAGAAGTGTGCAGGGAGCTGCGCCTGGAGCGCCGAATCCGCTGGTCGGTGATTGGACAGCCTGGTAGCCAGATGGGAGATTGGAGACCCCTGggcatggagacacacacacctctgggaATGGACTCTCCCTTCAGACACTCCACCTCCTCGATGGACACTCTTTCCAGTCAGATCTCGACTGAGAACCTCGAGGTTGCTAGGCTACATACTGCCAGACCACATATTGCCAGACCACAAACTACCAGACCACGTTCTGCCAGACCACCATCTGAAAGACCTAGCAGTGACTCTGATCACTCTGGAACCTTGTCTTCTGTGATGACCTGCTCACCACATTCAGCTAGCCCGTCAGTGATTACTGTTAGGGACTTGCTGCTCCTGATTGGGCACATAACGAGCTCAGTATTGGAGGAGGTAAATAGCATCCTGATCCCTGCCTTGGTTGACCTTATAAGGCTGAGAGCTTCAGAAAGTACTGCAGAGAATATGCTCCCCATCAGCAAAGACACCAACAAAGATTCAACCCAGGGCTCTGTCAGCTGTACCTCCCTACTCTCCAAAGTCAATGTGATCTGTCTCACTCAAAGTCCTGACAGTAGGTCCTCCCCAATCTCCATTGATGAACCAGTCACTGCTGTCCAGACTTATTGTAGCAGCAGTTCTCTGTCCAGTGAGGAACGAGCTCACTCAACCTCCAATCAGGTCTCTACTGAGAACCTCCATGCTGCTAGGCCATGTTCTGCTACGCCACAGTCTGCCAGGCCACAGTCTGACATACAATGTACTGCCGCTGATGTCTATGAACCCCCATCTGCTGTAGTGGGCTGCACACCACATTTAGCTAGCCCAGGTTTGATATGTCATTTTAGTCATGGACATGTCATCCCCTTCAAACAGACCTTGGCCAGTTTCTCCTCCTCCAACACCAGCTTCCCTTCCAGCCAGGGCTCATCTACCAGAAGCTCCATAGTGTCTACCACTTTGAAACTCTCAGCCACTGATATGCCTCCCAAGCAGTGGTCAGCCACGagcacctcctcctcctcgggCTCCATCAAGATTTTTGACCGAATGAGTGATATTCCTTGTTCCTTGGCTGTGAGCTCTATTTCAACTGTTCCTAGACCTGACTCTAGCAGCAGCCCTGTGCGAGAGAATCAATTTGCTACTGAGGTCTCGTCGATCTGCCTCAGCCAAGATAGAAATGGCCAAGGAGGGAGTGTGACACCTCCAGCCCCTTTGGATGTTTCCCTCCCCTCCATTATTGAGCGGGCTGGTGGACTTGTATGTTCCGTCATCTCCCAGTCTTTAGCAATTGTGGAGGCGCGGTCAAGTGTGAATGGTGAGGAGGGCTCTCCATCTCCCACCACAGTCTCCCATTCTCCTACAAGGGTGTTTGTCAGCCACTTAAGGAGTAGCCCACTAGGTGAGGACCTTGTAGATTCAACACTTGCGGATGTTATCTCTGTCCTGAAAATGGAGGGAATTCTTTCCTCCTCTCCGACTTTGGAGGAGGAGCTGCTTGATCTCTCCTCCAGTTGTTCTTCGTCATCCAGCGAAACACTGCAATGTGTGTCTGTTGGCCCTCTTGGCAGTGGGTCGGAGACGTCCTTCAAACTTCTTGGGGGTCGTACTCTGAGTATCGCCACCCCAACGGCCCATGTTACCACAGAGGACTTAGAAGTCTACAGTGATGAGATCATTGACGAAATCCTTATTATAATGAGGACCAAAAAAGATGATGAAAGTGGAAGTGACGTCTCTGGTGCATCAACACCATGCAACACACCAGCACCACAGAGCCGGTCCTCTTCTGCACTGAGGGGAGTGCTTCCCCATGACAGGAGGATACTCAACACAACACTGCTTGGAATCCAGAACACACTAGACAGTGAGAACCTCACAGGAGAGTGTTCCACCTCACCACAGGACAATGCCAGAGTCCTGGAGATGATAAAGTTGCTGCAGAGGCGCCTTGAGGGGACACCCTCAGAGTCCTCCATCCATATCACAGATGTGGCTTCACCCTTGGGCTttcctctccctgtatctctctatgCTGTTCAGTCGTGTGTATTTGCCACTGACAAAGACCTGAAGGCGGAAAGAGTGAAGGGAGTCTTTGAAAGCCTGAGATCCCAGTTTATGAGCTACTCCATCAAGCCTGTGAGTAACATCATTACCAGGGCAACAACAAAGATGGCTGCCTCCAATCAGCTTAGTTCAGAGACCCTCCAGGCAGCATCAGCAAAATCATCTGCTGTGGCTCAGAACCTTATTAGTTCGGTTTTATTTAAAGTTGCCAAGGTGTCCTGCTCTGATGACTTAGAGGGTCTGGGTGATCATCTCAGATGCCCCTCAACTTTGACCAGAGTTCTGACACCTTTGACCTCGGAGAAAGCTACACTGACACCTGCTGTTCTGAAGATCAGAAGGGAGATGTCTAAGGAAGTGGCCACCGAACTCCAGAGTTTCTTGATCAAGGAATCACTTACTGGCACCCAGACACCATCCAATGGACATGTTTGCACTTCTGGTTCTGCCCCAAGGGAAGCTGTGTGGGACATCCTGAGGAAAACCAAAGAGGAGGCTTCCAACAAAAGCTTGAATAATATTTTCTCTGTTAATTTGGATGAGTGGCTCACAGACTCCATTGCAGATGCCTTATATCCAAAGCTGCATGACAGATTGGAGTCCAAGAGAGAGCTGCAGGCTTCTTATTACAGCTCCCAGATCAGCTGTAGCCTCAGCCCCTTCGAAGTTGAGAGCAGCCTAGAGCTCCAGGAGTTCACTGACCCACTTTCTGAGTCAGTATTGTGTCTCCTGGATAGGACATTTGGAGCTCAGAACTTAAATACAGGCGGGGATGTTTTACAATATGTCACAGACCCAACCTATAATAACCTTTTGATTGGATCCCACACCAACGACGTCAATGTGGTTGTGCACACGATTGCAGTGGAGGAGTTGCCTGTTGAGGGTTGTATTACGCAAAGTGAGGCCATTCATGGCCTTCACAAGAAGCAAGAGTTACCTCCCAGCACCAGTGGCAGAGGGAATGAGACGCCGAGCCCTACTAATTGCCTACTGGAGGGTGTAGTGGGGAAACTGGTACGGCGGATGCTATTTCAGGGCCTTGACATCCCTGAGGTACCCATGAACTACAGCCGCTCTGAGAACTTTAAGATCCAGTATGAACTGGTGGCAAAGCTTTGTCCTCTGATGGTAAGGACAATCATGGCTACAACCATAGCCAATCAACCACCTACTCTTCAAGAAGCAGTGATGTCTTCCGAGAACATCCATGTGAAAGAGCTGTGTGAGGCAGGTATCAAACACCTCAAAGAGAACCATGTATCCGATGACTCTGAGACAAACATCATGGTCAGAGGGGCTTTGAGTGAAATTGAATCCTGTATGATTGAGACCTCCGACAAGGACTCTCCCAGTCTACATTCCACACCAGAGGTGGTTGTAGACCTGATCACCAAGCTGCTTCATGGGTATGAGCTTGACACAGAAGACTTTGCATCACCTGTGTCATCCCCAACCACCACTCTCTCTGATGTGGCAATGGACATGGTGGTTTCTGTCCTTCGGGACATGTCTGATTCCCCAGACGTTACCTCAGCATTGGAAATGACCAAGGATCTCAAGACGCCGTACTCCCGCCCCTCAAGTGCAAGGATTGTAAGTGCCCTCTGCAGAGAGCTGGAGGAGCAAATGGGCTCTCCTGATGCTCTGAGGCGAGCTTTGAGCCGTGGCAGCGGGGAGATGACAACAGCCATTGCGAGTGCAGTCACCAGGGAAGTCAACCGTCTGGGTTCAATCGTACCCAAAGTCTCTATCAGGCCGCTCTCCTCAGACATCTGCCtaaggacagaccaggacaaggtCATGGTTAAGAGCCGATGTGGCTCGGCTGAGGTGAAGGCATCCCAACCGGTGTATATTATTGTTCATGTAGAGGCGGTGATGGATATCATTGTCCGGCTGCGGTCTCTGATTGTTCCTCGGACCCAGGATAAACTGGCCAGCTGGACCCTAGTTGAGGATGTGACCAACAAGCTGTCCAGTGCTCTGTGGGTGAGGGTGACTAACAGGTGGAGGGAAGCAAATGTCTGCCTGAAGGCAACAGACATCTTTCAGTTGGTGCTGTCTGTGCATAGAAAGTTGATGCAACGCTATGGCACAGAGGAAGCCCTACAGAAGATACTGTGCCACAAGGCACCCAAGCTGCACAAGGACATTGTCTGTCTTGTCACGAACGGAATTATGGATGCACCATCCAAACTTCAAGGCACCAAAAATCTGGAATCTACACTCAACTTGAAAGAATTGACAGCCTTGTTTAATGAAATGATGACCCGTCAATCTTTGAATAAGAAAGCTGAGCAGAGCAGCATCAAGATTGAGGTTGAACAGCCGGAGTGGTCCACTGTGGAACAAGTGACATCCGGTTCCACCAGCTTCATTAGGGAGCTTATATTAGAAGAAGTCCTGATGAAGCTTGTCAAGAAGATATGCCGTATGCCAAAAAGGACCAACAAGCGTCAGCGCATCCAGATCAGTGATCTGGTGACTGATCTGATCCGATTGTTCGACGATGAGGTGGCCAAATATCTGATTGAGGAAATGGAAAGCCAGCAAAAAAGTTTCAATTCTAAGATGACATCGAAGCTGGCAGATGCCATCTACACTGACCTTGGGAAGGTCAAGCGTTTGAAACGCTCCTTGAAAATTGACGATTTATTTGAGGATCAGGAGATGCtttccattgtctctgtcattGTTTCCCACAAGCTACTGGCCATCTTGAAACCCTCAGTTTCCAACCCATATGACCGTGAGACCTCAGACCTTGAAGACTCATGCAGTAATGATTTGGAGAATGCTGTATCTGAGGGGGTGCATTATACAACTGGCAGAAAGTCCAAAATGAGCATCGTCCTTACAGACACTACAATCCAGCCAGAGATGTACATTGCTGTGGATTCTCCACCTATGATTAAATTATCCAAGATGAGGAAAGGCATCCGGGACTTCTTCTGGGGAGTCCAGAAGGCCTGGAAACGCTTGGTCACCTGCAAGTCCTCTGGGTCCTCTGATGGGTAGCCTGGATGACGTTCAGCCCATGTCAGTTGCTTTTGCCAGGCTACATCTGAGGAGGACACCACAACTGTTTATTTTTGTTGGTCATTTCTGTTTTCATTTTGAATCCCCTAATGCTGCTATATTTGAACCAGGCTGTCAGTGGACTAGCTTACCATTAGTTTATACTCCTTAAGGAAGATCCACTATAGGCTAGTCAACACCACAATTCCATCTGGTTCTTTTGATCCCTTATTAGCTCCTAATCCTGTAACTAGGAATGTGAGCTTCTAAATGTCATTCAAACATCTACAGCTTCTCCTGTGATTAGGAAGATAAGCTAAGAAGCCCAACCAATTGACTAGATGTGCTGTACATCTGATGCCCTCTCCCTATTGTAATCATTGATCCACGTCCATGGCAGCCTCTAAATTTGATGTAGATATTTAGCCTAAATTAAAAAATGACAAGGAGGGTAGGCCGACAGCAGCTTCTACTCTTACGATTAGGAAAGTGGTGCTAAACTTTTTGGGCTTTGGAGCGTTATATTATAGTAGAAATAATGTAAATGAATAAAAGTTAATTGATGTATGTCAACTTGATGGCGATATTTGCTTGCTCAACAAAAGCTATATTGGTGTTAGGTCTGAAGTTGCATGACATTCACGTATTTATTTAATTGTCACGGCCTTGAAAGAGGTAGAAAAGGCCTCAAGATGACGGCAAATATCTTCTGTCAGAAAATCTAATCAATGTGTTTATCACATGCGCTGAGTCGAACaggtgaaatgcatacttacatcTTCCTCTAACTCTGCCTTGGCAGAGAAGGGCTTGATgaatcatatacagtatattgaattcAGAGTTTCTTGTATGAAATACAACATTGCTGTCTGCCAAATGAATTAGCAGTATTAAAGCAgtgtaatatacactgagtgtacaatacATGAGTGCTCTTCCCATGACATAGATGGCCCAGGTGAatcaaggtgaaagctatgatcctttattgatgtcacagTGTAGATGCTGGGTTTTTGACGCGTAACAgtgtcccgtgtgtatcaagaatggtccaccaaccaaaggacacccagccaacttgacacaactgtgggaagca
>TU190863
TCTCAGATGCCCCTCAACTTTGACCAGAGTTCTGACACCTTTGACCTCGGAGAAAGCTACACTGACACCTGCTGTTCTGAAGATCAGAAGGGAGATGTCTAAGGAAGTGGCCACCGAACTCCAGAGTTTCTTGATCAAGGAATCACTTACTGGCACCCAGACACCATCCAATGGACATGTTTGCACTTCTGGTTCTGCCCCAAGGGAAGCTGTGTGGGACATCCTGAGGAAAACCAAAGAGGAGGCTTCCAACAAAAGCTTGAATAATATTTTCTCTGTTAATTTGGATGAGTGGCTCACAGACTCCATTGCAGATGCCTTATATCCAAAGCTGCATGACAGATTGGAGTCCAAGAGAGAGCTGCAGGCTTCTTATTACAGCTCCCAGATCAGCTGTAGCCTCAGCCCCTTCGAAGTTGAGAGCAGCCTAGAGCTCCAGGAGTTCACTGACCCACTTTCTGAGTCAGTATTGTGTCTCCTGGATAGGACATTTGGAGCTCAGAACTTAAATACAGGCGGGGATGTTTTACAATATGTCACAGACCCAACCTATAATAACCTTTTGATTGGATCCCACACCAACGACGTCAATGTGGTTGTGCACACGATTGCAGTGGAGGAGTTGCCTGTTGAGGGTTGTATTACGCAAAGTGAGGCCATTCATGGCCTTCACAAGAAGCAAGAGTTACCTCCCAGCACCAGTGGCAGAGGGAATGAGACGCCGAGCCCTACTAATTGC

Function

NR:

description
uncharacterized protein LOC110493347

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952487.1 False 6652 mRNA 0.48 7 61525283 61535728
TU190863 True 739 TUCP 0.48 1 61531589 61532327

Neighbor

gene id symbol gene type direction distance location
LOC110493335 LOC106560997 coding upstream 15967 61499096 ~ 61509316 (+)
LOC110493325 LOC106561124 coding upstream 45467 61477111 ~ 61479816 (+)
LOC118941126 NA coding upstream 212736 61311328 ~ 61312547 (+)
LOC118941124 NA coding upstream 266258 61257716 ~ 61259025 (+)
LOC110493175 LOC106561005 coding upstream 333434 61130439 ~ 61193594 (+)
LOC118941130 NA coding downstream 3137 61538865 ~ 61567852 (+)
LOC110517167 LOC106560954 coding downstream 76231 61611959 ~ 61616459 (+)
LOC118936777 LOC106560954 coding downstream 143221 61678949 ~ 61685871 (+)
LOC118941131 LOC106560954 coding downstream 163172 61639655 ~ 61699665 (+)
LOC110491115 NA coding downstream 172721 61708449 ~ 61710105 (+)
LOC110501762 LOC106560954 non-coding upstream 200 61520483 ~ 61525531 (+)
G167539 NA non-coding upstream 5748 61519165 ~ 61519535 (+)
G167535 NA non-coding upstream 12807 61512221 ~ 61512476 (+)
G167509 NA non-coding upstream 26453 61497489 ~ 61498830 (+)
G167494 NA non-coding upstream 97801 61427177 ~ 61427482 (+)
G167599 NA non-coding downstream 138573 61674301 ~ 61729889 (+)
G167616 NA non-coding downstream 220487 61756215 ~ 61834645 (+)
G167622 NA non-coding downstream 258852 61794580 ~ 61794870 (+)
LOC118937286 LOC106560954 non-coding downstream 367259 61902987 ~ 61905185 (+)
G167325 LOC106561003 other upstream 292738 61232196 ~ 61232545 (+)
G167288 NA other upstream 450692 61062593 ~ 61074591 (+)
LOC110493059 LOC100194658 other upstream 658828 60851417 ~ 60866455 (+)
G166878 NA other upstream 1009403 60515632 ~ 60515880 (+)
G166131 lmod2 other upstream 1572118 59945708 ~ 59953165 (+)
G167609 LOC106560954 other downstream 191231 61726959 ~ 61727454 (+)
LOC118936783 LOC106560954 other downstream 344042 61870393 ~ 61880657 (+)
G169130 NA other downstream 1249630 62785358 ~ 62785643 (+)
G170131 NA other downstream 2284733 63820461 ~ 63830320 (+)
G170150 LOC106560975 other downstream 2337520 63873248 ~ 63878233 (+)

Expression


Co-expression Network