LOC110491137 (LOC106560954)


Basic Information

Item Value
gene id LOC110491137
gene name LOC106560954
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61910943 ~ 61916119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952522.1
AACCACCACTTGCTAAACCACAATCTGCTAAACCACCACCTGCTAAACCACAATCTGCTAAACCAACGCCTGCTAAACCAACACCTGCTAAACCACCACCTGCTAAACCACCTACTGCCACTGACTACTCTGGAACCTTATCTGCTGTGGTAGGTCGTGGGCATATCATCCCTGTCAAACTGACCTTGGCCCCTTTCTCCTCAATCTCCAGCGACGAGACCAAcaccaacctctcctccagcagccTCCCTTCCTCGTGCTCCATCAAGCTTTCAGACAGTAGGAGTGACATTCCTTGCTCCCTGACTGTAAGCTCCATTTCAAATGTTCCTGGACCTGACTCTAGCAGCAGCCCTGTGCGGGAGAATCAATTTGCTACTGAGGTCTCGTCGATCTGCCTCAGCCAAGATAGAAATGGCCAAGGAGGGAGTGTGACACCTCCAGCCCCTTTGGTTGTTTCCCTCCCCTCCATTATTGAGCGGGCTGGCGGACTTGTATGTTCCGTCATCTCCCAGTCTTTAGCAATTGTGGAGGCGCGGTCAAGTGTGAATGGTGAGGAGGGCTCTCCATCTCCCACCACAGTCTCCCATTCTCCTACAAGGATGTTTGTCAGCCACTTAAGGAGTAGCCCACTAGGTGAGGACCTTGTAGATTCAACACTTGCGGATGTTATCTCTGTCCTGAAAATGGAGGGAATTCTTTCCTCCTCTCCGACTTTGGAGGAGGAGCTGCTTGATCTCTCCTCCAGTTGTTCTTCGTCATCCAGCGAAATACTGCAATGTGTGTCTGTTGGCCCTCTTGGCAGTGGGTCGGAGACATCCTTCAAACTTCTTGGGGGTCGTACTCTGGGTATCGCCACCCCAACGGCCCATGTTACCACAGAGGACTTAGAAGTCTACAGTGATGAGATCATTGACGAAATCCTTATTATAATGAGGACCAAAAAAGATGATGACAGTGGAAGTGACGTCTCTGGTGCATCAACACCATGCAACACACCAGCACCACAGAGCCGGTCCTCTTCTGCACTGAGGGGAGTGCTTCCCCATGACAGGAGGATACTCAGCACAGCACTGCTTGGAATCCAGAACACACTAGACAGTGAGAACCTCTCAGGAGAGTGTTCCACCTCACCACAGGACAATGCCAGAGTCCTGGAGATGATAAAGCTGCTGCAGAGGCGCCTTGAGGGGACACCCTCAGAGTCCTCCATCCATATCACAGATGTGGCTTCACCTTTGGGCatatctctccctgtatctcacTATGCTGTTCAGTCGTGTGTATTTGCCACTGACAAAGACCTGAAGGCAGAAATAGTGAAGGGAGTCTTTGAAAGCCTGAGATCCCAGTTTATGAGCTACTCCATCAAGCCTGTGAGTAACATCATTACCAGGGCAACAACAAAGATGGCTGCCTCCAATCAGGTTAGTTCAGAGACACTCCAGGCAGCATCAGAAAAATCATCTGCTGTGGCTCAGAACCTTATTAGTTTGGTTTTATTTAAAGTTGCCAAGATGTCCTGCTCTGATGACTTAGAGGGTCTGGGTGATCATATCAGATGCCCCTCAACTTTGACCAGAGTTCTGACACCTTTGACCTCGGAGAAAGCTACACTGACACCTGCTGTTCTGAAGATCAGAAGGGAGATGTCTAAGGAAGTGGCCACCGAACTCCAGAGTTTCTTGATCAAGGAATCCCTTACTGGCACCCAGGCACCATCCAATGGACATGTTTGCACTTCTGGTTCTGCCCCAAGGGAAGCTGTATGGGACATCCTGAGGAAAACCAAAGAGGAGGCTTCCAACAAAAGCCTGAATAATATTTTCTCTGTTAATTTGGATGAGCGGCTCACAGACTATATTGCAGATGCCTTATATCCAAAGCTGCATGACCGATTGGAGTCCAAGAGAGAGCTGCAGGCTTCTTATTACAGCTCCCAGATCAGCTGTAGCCTCAGCCCCTTCAAAGTTGAGAGCAGCCTAGAGCTCCAGGAGTTCACTGACCCACTTTCTGAGTCAGTATTGTGTCTCCTGGATAGGACATTTGGAGATAAAGCTCAGAACTTAAAGACAGGCGGGGGTGTTTTACAATATGTCACAGACCCAACCTATAAGAAGCTTTTGATTGGATCCCACACCAACGACGTCAATGTGGTTATGCACACGATTGCAGTGGAGGAGTTGCCTGTTGAGGGCTGTATTGCGCAAAGTGAGGCCATTCATGGCCTTCACAAGAAGCAAAAGTTACCTTCCAGTGGCAGAGGGAATGAGACCCCGAGCCCTACTAATTGCCTACTGGAGGGTGTAGTGGGCAAACTGGTACGGAAGATGCTATTTCAGGGCCTTGACATCCCTGAGGTACCCATAAACTACAGCCGCTCTGAGAACTTTAAGCAGTATGAACTGGTTGAAAAGCTTTGTCCTCTGATGGTAAGGACAATCATGGCTACAACCATAGTCAATCAACCACCTACTATTCAAGAAGCAGTGATGTCTTCCGAGAACATCCATGTGAGAGAGCTGTGTGAGGCAGGTATCAAAAACCTCAAAGAGAACCATGTACCTGATGACTCTGAGACAAACATCATGGTCAGAGGGGCTTTGAGTGAAATTGAATCCTGTATGATTGAGACCTCCGACAAGGACTCTCCCAGTTTACATTCCACACCAGAGGTGGTTGTAGACCTGATCACCAAGCTGCTTCATGGGTATGAGCTTGACGCAGAAGACTTTGCATCACCTGTGTCATCCCCAACCACCACTCTCTCTGATGTGGCAATGGACATGGTGGTTTCTGTCCTTCGGGACATGTCCGATTACCCAGACGTTACCTCAGCATTGGAAATGACTAAGGATCTCAAGACGCCGTACTCCCGCCCCTCAAGTGCAAGGATTGTAAGTGCCCTCTGCAGAGAGCTGGAGGAGCAAATGGGCTCTCCTGATGCTCTGAGGCGAGCTTTGAGCCGTGGCAGCGGGGAGATGACAACAGCCATTGCGAGTGCAGTCACCAGGGAAGTCAACCGTCTGGGTTCAATCGTACCCAAAGTCTCTATCAGGCCGCTCTCCTCAGACATCTGCCtaaggacagaccaggacaaggtCATCGTTAAGAGCCGATGTGGCTCGGCTGAGGTGAAGGCATCCCAACCGGTGTATATTATTGTTCATGTAGAGGCGGTGATGGATATCATTGTCCGGCTGCGGTCTCTGATTGTTCCTCGGACCCAGGATAAACTGGCCAGCTGGACCCTAGTTGAGGATGTGACCAACAAGCTGTCCAGTGCTCTCTGGGTGAGGGTGACTAACAGGTGGAGGGAAGCAAATGTCTGCCTGAAGGCAACAGACATCTTTCAGTTGGTGCTGTCTGTGCATAGCAAGTTGATGCAACGCTATGGCACAGAGGAAGCCCTACAGAAGATACTGTGCCACAAGGCACCCAAGCTGCACAAGGACATTGTCTGTCTTGTCACGAATGGAATTATGGATGCACCATCCAAAATTCAAAGCACCAAAAATCTGGAATCTACACTCAACTTGAAAGAATTGACAGCCTTGTTTAATGAAATGACAACCCGTCAATCTTTGAATAAGAAAGCTGAGCAGAGCTGCATGAAGACTGAGATTGAACAGCCGGAGTGGTCCACTGTGGAACAAGTGACATCCGGTTCCACCAGCTTCATTAGGGAGCTTATATTAGAAGAAGTCCTGATGAAGCTTGTCAAGAAGATATGCCGTATGCCAAAAAGGACCAAGAAGCGTCAGCGCATCCAGATCAGTGATCTGGTGACTGAGCTGATGCGATTGTTCGACGATGAGGTGGCCAAATATCTGATTGAGGAAATGGAAAGCCAGCAAAAAAGTTTCAATTCTAAGATGACATCGAAGCTGGCAGATGCCATCTACACTGACCTTGGGAAGGTCAAGCGTTTGAAACGCTCCTTGAAAATTGCCGATTTATTTGAGGATCAGGAGATGCtttccattgtctctgtcattGTTTCCCACAAGCTACTGGCCATCTTGAAACCCTCAGTTTCCAACCCATATGACCGTGAGACCTCAGACCTTGAAGACTCATGCAGTGATGATGTGGAGGATTTGGAATCTGAGGGGGTGCATTATGCCACCAACAGAAAGTCCAACATGAGCATCGTCCTTACAGACACTACAAACCAGCCAGAGATGTACATTGCTGTGGATTATCCACCTATGATTAAATTATCCAAGATGAGGAAAGGCATCCGGGACTTCTTCTGGGGAGTCCAGAAGGCCTGGAAACGCTTGGTCACCTGCAAGTCCTCTGGGTCCTCTGATGGGTAGCCTGGATGACGTGCAGCCCATGTCAGTTGCTTTTGCTAGGCTACATCTGAGGAGGGCACCACAACTGGCCTCAatacaacatttttatttttgttgctcATTTCTGTTTTCATTTTGAATCCCCTAATGCTGCTATATTTGAACCAGGCTGTCAGTGGACTAGCTTACCATTCGTTTATACTCCTTAAGGAAGATCCACTATAGGCTACTCAACACCAAAATTCCATCTGGGACTTTTGATCCCTTATTAGCTCCCACTCCTGTAACTAGGAATGTGAGCTTCTAAATGTCATTCAGACTACAGCTTCTCCTGTGATTAGGAAGATAAGCTAAGAAGCCCAACCAATTGACTAGATGTGCTGTACATCTGATGCCCTCTCCCTATTGTAATCATTGATCCACGTCCATTGCAGCCTCTAAATGTGATGTCGATTTTTAGCCTAAATTAAAAAATGACAAGGAGGGTAGGCCGACAGCAGCTTCTACTCTTACGATTAGGAAAGTGGTGCTAAACTTTTTGGGCTTTGAGGAactatgtattttatttttcaatCACTTACATACTTTTTAATTGTTGTTTTAATAAAGCAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106560954

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952522.1 True 4913 mRNA 0.48 3 61910943 61916119

Neighbor

gene id symbol gene type direction distance location
LOC118937286 LOC106560954 coding upstream 5758 61902987 ~ 61905185 (+)
LOC118936783 LOC106560954 coding upstream 30286 61870393 ~ 61880657 (+)
LOC118941134 LOC106560954 coding upstream 40585 61862246 ~ 61870358 (+)
LOC110491157 LOC106560954 coding upstream 60185 61845396 ~ 61850758 (+)
LOC110512213 LOC106560954 coding upstream 151814 61758241 ~ 61759129 (+)
avpr1aa LOC106560996 coding downstream 141810 62057929 ~ 62062744 (+)
ppm1h LOC106560995 coding downstream 176300 62092419 ~ 62154496 (+)
fbln1 fbln1 coding downstream 367085 62283204 ~ 62369308 (+)
LOC118941151 NA coding downstream 604413 62520532 ~ 62530986 (+)
LOC110493430 NA coding downstream 646064 62562183 ~ 62618837 (+)
G167616 NA non-coding upstream 76298 61756215 ~ 61834645 (+)
G167622 NA non-coding upstream 116073 61794580 ~ 61794870 (+)
G167599 NA non-coding upstream 181054 61674301 ~ 61729889 (+)
LOC118941131 LOC106560954 non-coding upstream 211571 61639655 ~ 61699665 (+)
G168279 NA non-coding downstream 20929 61937048 ~ 61937284 (+)
G168280 NA non-coding downstream 21367 61937486 ~ 61937775 (+)
G168291 NA non-coding downstream 28990 61945109 ~ 61945418 (+)
G168293 NA non-coding downstream 30085 61946204 ~ 61946444 (+)
G168335 NA non-coding downstream 75392 61991511 ~ 62038823 (+)
G167609 LOC106560954 other upstream 183489 61726959 ~ 61727454 (+)
LOC110510683 LOC106560954 other upstream 378616 61525283 ~ 61535728 (+)
G167325 LOC106561003 other upstream 678398 61232196 ~ 61232545 (+)
G167288 NA other upstream 836352 61062593 ~ 61074591 (+)
G169130 NA other downstream 869239 62785358 ~ 62785643 (+)
G170131 NA other downstream 1904342 63820461 ~ 63830320 (+)
G170150 LOC106560975 other downstream 1957129 63873248 ~ 63878233 (+)
map1lc3b map1lc3b other downstream 3615027 65531126 ~ 65536787 (+)
jph3 jph3 other downstream 3677398 65593468 ~ 65648660 (+)

Expression


Co-expression Network