slc6a13 (LOC106560993)


Basic Information

Item Value
gene id slc6a13
gene name LOC106560993
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62223933 ~ 62258267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952561.1
GCTCATTGAAGGCTGAACTTAAGTTTGGAGTTACCGAGATCCCCCGCCCCTCCATGCACGTTATATAGTAAAACCTAGACACCAACAGGCCAATATCTGGCTAACCATTCGAACCATCAGACTGTCTTTATTATGAAAGGCGACATGGAGAGCCTGCCTAAGATGGACCCCTCCAATGACCACAGTCGGCCCCTGGACATTGTGCCACAGAGCGATGAGAAGATGAAGGAGAGGGGCCAGTGGGGAAACAAGGTGGAGTTTGTCCTTTCTGTTGCCGGGGAGATCATAGGACTGGGCAATGTGTGGCGCTTCCCTTACCTGTGCTACAAGAACGGAGGAGGTGCTTTCTTCATCCCCTACCTCATCTTCCTGTTCACCTGTGGGATACCAGTGTTCTTCCTGGAGACAGCCCTGGGACAGTTCACCAGCGAGGGAGGCATTACCTGCTGGAGGAAGATCACTCCTCTGTTTGAAGGAGTGGGCTACGCCACACAAGTCATTGTGGCTCTGTTGAACTTCTATTACATCATCGTCCTGGCCTGGGCCATCTTCTACCTGTCCTACTCCTTCACCTGGGACCTGCCCTGGGCCTCCTGCAACAACACATGGAACACAGATTCCTGCATGGAGTTCCAGAGGAGGAATGGCTCTTTCAATCAGCCACGTCTGAACGCCACGTCTCCTGTCATTGAGTTCTGGGAACGGAGGGTTCTGCGTATCTCCTCTGGCATAGATCATATAGGATCTCTCAACTGGGACCTGGTTCTGTGTCTGGCCATAGCCTGGGTACTAGTCTACTTCTGTATCTGGAAGGGAGTCAAGTCGACTGGAAAGGTGGTATATTTCACAGCCACCTTCCCCTACATCATGCTGTCTATCCTGCTCATCAGAGGGGTCACCCTGCCTGGAGCCTTCATAGGAATCAAGTTCTACCTCTACCCAGACCTGGGCCGCCTGTCAGATCCACAGGTATGGATGGATGCAGGGACTCAGATCTTCTTCTCCTATGCCATCTGTCTGGGGTGTCTGACTGCTCTGGGAAGCTACAACAAGTACAATAACAACTGCTACAGAGATTGCTTGGCGCTATGCTTCCTGAACAGTGGGACCAGCTTTGTGGCAGGCTTTGCCATCTTCTCCATCCTGGGCTTCATGTCTTACGAGCAGAACGTGCCCATCTCAGAGGTGGCAGAATCTGGTCCTGGTCTGGCCTTCATAGCCTACCCCCGTGCAGTTTCTATGatgcccttctctcctctctgggccTGTTTCTTCTTCATCATGATCGTCTTTTTGGGTCTGGACAGCCAGtttgtgtgtgtggagagtCTGGTGACGGCCATGGTGGACATGTACCCTAAAACCTTTCGTCGTAAGAACCGCAGAGAGCTCTTCATCTTGGCGGTGGCCATTGTCTCCTTCCTCATGGGTCTCATCATGCTGACAGAGGGAGGCATGTACGTCTTCCAACTCTTTGACTACTATGCTGCCAGTGGGACGTGCCTGCTCTTTGTGGCTGTCTTTGAGACTGTTTGCATTGCTTGGATTTATGGTGCTGACCGTTTCTATGACAATATTGAGGACATGATTGGCTACCGTCCCGGACCTATTATCAAATACTGCTGGATGTTCTTCACTCCTGCTACCTGCTTAGGTACCTTTGCCTTCTCCCTGATCAAGTACACCCCTCTGAAGTACAACAATGAGTATGTGTACCCTTGGTGGGGCTACTGCCTGGGCTGGCTCCTGGCCCTGTCCTCCATGCTCTGTGTTCCCCTCTGGGTGGTCATCAAAATGTGTTCTGTGGAAGGCACCCTGAAAGAGCGCTTTACAATCCTGACCACGGCATCCACTGACTTACCTAAAaccaaggaggagcaggagaagctGCTGGCCATCTTTCCTGGCGATGGGGACAGCCTCCGTCAGAGACACCCTCCCACCAAGGAAGGCTACTTCCCCGTCAACGAGAAGGAGTCCAACTGCTAGAGCTAGGAACGTGGACCCAGACCCTCTGAGGTCCCATGTCCATTCCCTTGACATGGCCTCTCCTCAACGATACCTCATAACTGCACAACTGCGGCCAAATGAGCACGGATGCAGTGACACTGGTGCTGCTGTGCCTtagctctttctctcctgcaaGGTCTATCAGAGACAGTACAGACTACTGCTTCAGATGCTGTCCTGTTGTTAAGTCTTGTACACTCTTATGTTTACACACTCAATGCAACTGGCTCTCCGCCATCCACACTTCCATCCACGGGAGAGTCGGTCTATCCACTTCTCTCTCCCACTGTTGCCTTATCAACCACAAACTTTAGCTGTGTTTTGCTGATTTCTTTCACTAAAGTTGAGCAGACATTGAAATGGTGTGATTCAGTGATTTGTTATATGTCCATTGTAGTTGAGACTTGAGAATGTTTGTCTGATGATCGCACCTGCTTTCTAAGGAAGCAtcttttattttcctttttttcaTGGACATCTCTCGGGCATATGTGTACACAATTTGCTATGATTAAGTATTCTTTTAGTGCATCATGTCGAACTCGCTGCAGTCATATGAGTTGAATGTAATACATCATTCTAATCAATATGTTTGTTAATTTACCTGTTAAACCTTAACTGACAACATTTCTACATGACACATGGAGGAATCAGATAGGCATATGCCAACTAAAATCATCATGTCATTGTGGTTACAATAAGTAACACAtcatttaaaggcccagtgcagtcaaaaacgagatttttctgtgttttatatacatgtCCACACAACGAGGTtgtaataatactgtgaaattgtgaaaatgcttatcatgcccttttagtgtaaaagctgtttgaaaagaccacctagAATTCCAGtctagttaatagaccaataagaaagagagttccaaaccactctgccaataacagccagTTTTCAGTTTTCCTCTCCCTGCTCaggccactcccagacagtccaagAAAAAGTATTGCTTGAAAAATTGCTCTTAGctagaagctatttttgtttctttaattgaaaacaatcattgTATGGTACTTCATTGTTACCTAGAAATGACTTGATATTGTTATAAAAAtgactgcattggacctttaacaatTTCTCATATGAACACTGTGACTTCAGATTGAAATATGTGCATGTGCTAAAATGTAATATCTCGTAATATATTTAATATCCAGATTTATGTCACAAAACTTGTGTCAAAAAGAAATCTGAAGCCCACCTGAAGTGCAAGTGTCTCTGTTTCTATTGTAGTAACCTGTAGGAGACTAACTAGTAGGCTATGCTAGCCGGAGGTTGTTGTTTGCGATTCGGATGGAGTCAGACTTACCGTAAATGTATTGCATTTGATTCAAAAGCTTACTTGGAGATATAATCATTGTGTATTAGCATTTTAATCATAGTCTTATGTCAGTTTTTATTCTGCATTGCTCTCATTCTTGGcttgatttgaaaaaaaaaaaaggtatacaatcgtatatatatatttttaagctgTATACCATGTCCAATATGTGATAAAGCACATGATAAACATGGTTTACAAACTAGTGAAGTATGGATTGTGTTCCAAAaaaaaatgttgtgcaacatttttTGCATTGGAAATCATTGTACCGTACAACAGTAGACCGCCATAGTGAGCAGTTTAGAGGTGACAGACCAGAACTTGAGTTTCATACCTTTTATGTTCACATACACAGTGTTAGTCTTTATTTGCTTGTATTGTCTATTCATTAATTCATGATCTGCTTTTCCTTAGCGAACAATAACTTTGAACAGTATAAGCTCTTACACTTCCAGTATGTGTTTGTCAGTGTTGCTAAGGCCATGTCTAGTCAAGTGCAAAGCTGAACACCGTTCACATGCATCACTACAACTGACATtgtaaaatacaaatatttgtatTAAAAGTTTTAA

Function

NR:

description
sodium- and chloride-dependent GABA transporter 2-like

GO: NA

KEGG:

id description
K05046 SLC6A13, GAT2; solute carrier family 6 (neurotransmitter transporter, GABA) member 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952561.1 True 3946 mRNA 0.45 15 62223933 62258267

Neighbor

gene id symbol gene type direction distance location
mon2 LOC106560994 coding downstream 6301 62167418 ~ 62217632 (-)
LOC110493282 LOC106560998 coding downstream 759631 61436215 ~ 61464302 (-)
LOC118936773 NA coding downstream 795466 61417500 ~ 61428467 (-)
LOC110493250 nfyb coding downstream 808631 61370307 ~ 61415302 (-)
LOC110493394 akr1d1 coding upstream 10537 62268804 ~ 62272122 (-)
wnt7bb LOC106560992 coding upstream 212977 62471244 ~ 62508410 (-)
LOC110493460 LOC106560989 coding upstream 490737 62749004 ~ 62878134 (-)
LOC110501769 LOC106560953 coding upstream 696852 62955119 ~ 62998770 (-)
LOC118941153 mansc4 coding upstream 764701 63022968 ~ 63025781 (-)
G168289 NA non-coding downstream 279537 61944059 ~ 61944396 (-)
G168287 NA non-coding downstream 279957 61943657 ~ 61943976 (-)
G168286 NA non-coding downstream 281265 61942450 ~ 61942668 (-)
G168281 NA non-coding downstream 285310 61938403 ~ 61938623 (-)
G168266 NA non-coding downstream 296377 61927320 ~ 61927556 (-)
G169349 NA non-coding upstream 344506 62602773 ~ 62602987 (-)
G169350 NA non-coding upstream 345156 62603423 ~ 62603975 (-)
G169351 NA non-coding upstream 346399 62604666 ~ 62605407 (-)
G169346 NA non-coding upstream 353097 62611364 ~ 62612531 (-)
G169345 NA non-coding upstream 354846 62613113 ~ 62614612 (-)
G168141 NA other downstream 708277 61515237 ~ 61515656 (-)
G168078 NA other downstream 732262 61490434 ~ 61491671 (-)
LOC110493186 mlkl other downstream 923841 61290149 ~ 61303507 (-)
G168021 NA other downstream 967918 61254512 ~ 61256015 (-)
G167866 NA other downstream 1248912 60974762 ~ 60975021 (-)
LOC110493507 LOC106560984 other upstream 888507 63146769 ~ 63224837 (-)
LOC110501772 LOC106560973 other upstream 1701256 63958607 ~ 63963969 (-)
tmem117 LOC106573612 other upstream 1907696 64102056 ~ 64170220 (-)
G172141 NA other upstream 2827305 65085572 ~ 65086188 (-)
G173121 NA other upstream 3125170 65383437 ~ 65383873 (-)

Expression


Co-expression Network