LOC118941151


Basic Information

Item Value
gene id LOC118941151
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62520532 ~ 62530986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037452.1
GTTCTCACTCTACAAGCAGTGTGGCAGTGTGTGAATGAGAGAAAAAGCACTGTGCAGCACCACCTTCATTACTCACCGCACCGGtgtgtggcCGAGGTGACAACAGATGGAGACGGACTCGGAGAGGGAGCCATTTTCAAGTCTACACTGAAGCCATTACCTCAGCTGCCACAGAGATGACAATGACATTTTCAGTCACCGCGTAACTCAGCTATAAACTGGAGCTGTTTGACATGAAAGGCATCTATTTCGTTTTATGTTGCTGTGGTGCATGAGTTCAATACATGTGTTTTCTTTGACAATTAAGAAGACAGTTTGGTCTGTAGTTAAACAATTACTCAGAGGCCACACTTAAGTGTAAAACAGACCACCGTCAGGTCCTGCATGCATGAGGCCTGTCTAGAGAGACTCACTGGGGAGCCAGTGATTATACAGTGTGATATGTTTATGTGGAATAAGTTGCAATGACTTCATTCCAGAGGCCCTCTTGAGGCCTTCTTTTTACACTGTAAAACAAGCTGGGATCAATAATTAGTATAGCAAGCATAACTCggcaacaaatcaaatcaaatgtgatttgtcacacacgccgaatacaacaggttacagtgaaatgcttacttacaagccctataGCCCGATAGTTAGTATAGTTCGTATACTGAGGCCCTCAGTAACCTATTAAAACCAGACGGCGATATACAAAACACAGCTTACCTTGTGACACACTGTCTAAGAAACGGTTAGTTTAGATAATACCTCATTTAGCCTCTGTTGctgtgaataaataaatacagatgCACATATAAATGCTGAAGTGACTGTTGTGAAGAGAGGCTAGAAATAGCATGCAGTGGCTCCAAACACTGTGTCCCTGGGAATTTATTTCTTCTTCACTGAATTTATTTGCTTTATGGTCAAATCGGCCACCTCCGTATCTGGCGAAGTCAATGTTACACCAGGGAGTGGTTGGCTATGAGTGGATTAAGACTTTTCCATTGACCAGCGGTTTACAGAGGTTATAATCTTGGGTCCCATTGAGTGATTTCCCGTTAAGCCCAGGAAAGCTGTCAAATGTTACTTACTGGAATCCAATGGAATTTGTAGCTAGCGCTGAGTCGTTGGCAGTGATGTACATGGACACAAAGCTCACAGGAAGTTGCAAATAGGACTGTCTGTGGACAATGAGGTTCTCTTTTATATAGtattgaacagaacagaacagaacagaacagggcaaTAAACTAGTATTTATTTTATCATGTTTTACTGAAAACATGGCTGTAATGGCTCCCAAACGTACACAGATCTGGCGCCGAGTGTTGTTGGACAGATGAATAATTTCTTAACCAAGAGATTTAATCATTTGAGGGATATATTGAAGCTAGCGGGTGGTGGGTCTAACCCTGGCAGTCTTGCATGATATTCAGACCTGCCTTTCATGCACATTGTCATTCTATGCatgataaaataatatatatct
>TU192429
GTGTGAATGAGAGAAAAAGCACTGTGCAGCACCACCTTCATTACTCACCGCACCGGtgtgtggcCGAGGTGACAACAGATGGAGACGGACTCGGAGAGGGAGCCATTTTCAAGTCTACACTGAAGCCATTACCTCAGCTGCCACAGAGATGACAATGACATTTTCAGTCACCGCGTAACTCAGCTATAAACTGGAGCTGTTTGACATGAAAGGCATCTATTTCGTTTTATGTTGCTGTGGTGCATGAGTTCAATACATGTGTTTTCTTTGACAATTAAGAAGACAGTTTGGTCTGTAGTTAAACAATTACTCAGAGGCCACACTTAAGTGTAAAACAGACCACCGTCAGGTCCTGCATGCATGAGGCCTGTCTAGAGAGACTCACTGGGGAGCCAGTGATTATACAGTGTGATATGTTTATGTGGAATAAGTTGCAATGACTTCATTCCAGAGGCCCTCTTGAGGCCTTCTTTTTACACTGTAAAACAAGCTGGGATCAATAATTAGTATAGCAAGCATAACTCggcaacaaatcaaatcaaatgtgatttgtcacacacgccgaatacaacaggttacagtgaaatgcttacttacaagccctataGCCCGATAGTTAGTATAGTTCGTATACTGAGGCCCTCAGTAACCTATTAAAACCAGACGGCGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037452.1 False 1483 mRNA 0.42 2 62520532 62530986
TU192429 True 671 lncRNA 0.44 2 62520560 62530202

Neighbor

gene id symbol gene type direction distance location
fbln1 fbln1 coding upstream 151224 62283204 ~ 62369308 (+)
ppm1h LOC106560995 coding upstream 366036 62092419 ~ 62154496 (+)
avpr1aa LOC106560996 coding upstream 457788 62057929 ~ 62062744 (+)
LOC110491137 LOC106560954 coding upstream 604413 61910943 ~ 61916119 (+)
LOC118937286 LOC106560954 coding upstream 615347 61902987 ~ 61905185 (+)
LOC110493430 NA coding downstream 31197 62562183 ~ 62618837 (+)
pparab ppara coding downstream 109522 62640508 ~ 62704574 (+)
LOC110493442 yars2 coding downstream 192459 62723445 ~ 62737914 (+)
LOC118941152 NA coding downstream 395760 62926746 ~ 62927472 (+)
mrps35 LOC106560988 coding downstream 476337 63007323 ~ 63022862 (+)
G168992 NA non-coding upstream 37578 62482740 ~ 62482954 (+)
G168991 LOC107388424 non-coding upstream 38152 62482127 ~ 62482380 (+)
G168986 LOC106560992 non-coding upstream 44123 62474140 ~ 62476409 (+)
G168985 NA non-coding upstream 49152 62469929 ~ 62471380 (+)
G168539 NA non-coding upstream 204560 62315751 ~ 62315972 (+)
G169015 NA non-coding downstream 80378 62611364 ~ 62612530 (+)
G169013 NA non-coding downstream 90246 62621232 ~ 62621911 (+)
G169016 NA non-coding downstream 94090 62625076 ~ 62625794 (+)
G169069 NA non-coding downstream 100883 62631869 ~ 62632110 (+)
LOC118936783 LOC106560954 other upstream 640108 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 793078 61726959 ~ 61727454 (+)
LOC110510683 LOC106560954 other upstream 988205 61525283 ~ 61535728 (+)
G167325 LOC106561003 other upstream 1287987 61232196 ~ 61232545 (+)
G167288 NA other upstream 1445941 61062593 ~ 61074591 (+)
G169130 NA other downstream 254372 62785358 ~ 62785643 (+)
G170131 NA other downstream 1289475 63820461 ~ 63830320 (+)
G170150 LOC106560975 other downstream 1342262 63873248 ~ 63878233 (+)
map1lc3b map1lc3b other downstream 3000160 65531126 ~ 65536787 (+)
jph3 jph3 other downstream 3062531 65593468 ~ 65648660 (+)

Expression


Co-expression Network