LOC110493460 (LOC106560989)


Basic Information

Item Value
gene id LOC110493460
gene name LOC106560989
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62749004 ~ 62878134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567748.2
AAATAAgatcctccactcctccctcctcggCTGCCCCTGAGGCTTCTGGGTAATTGCAGTGTTTAGGTCCATGGAGGAGACAGGCGGTCGGCGGGCGGGATGGTCACCTGGGCAGCTAAACAGGTTGTCTCACGCCCACAAAGCAGCAGTCAAAGTACTCCGGAGAATGAAGTACTTTGTGGCCAGACAGAAATTTCAGCAAGCGAGGAAGCCGTACGACGTGAGGGACGTGATGGAGCAGTACAACCAGGGACACCTCACCATGATGGTCCGCATTAAGGAGCTACAGAGGAGACTAGACCACACATTGGGGAAACCAGGAATGTTTTTGCCAGagAAAGGCGTAGATAAGGAATACCACACTGTGGGAGCCAGACTGATCCGCCTGGAGGACAAGATATACCAGATGGACCATAAGATGGAGGCAGTGCTGAAGATCTTGGTGGACCAGTACAAGCCCAAGGCAGAGCTGCTCCTGAgggccccagccccagcccctccACCCCCAGCCCCCTACAGCTCCCGCATCAGCATCGTGAGACGCCAGAGCATCGGCGTCAGCTTGGACGAGGGGCGGTGATGTCACAGTGGACAGAGAGGCGCCAGTGATGGACCAGGACCAGGCGTGGACCAGGCATGAGATATTAGCTGCTTGGCCAGGAGGCCACAGACTCAAATAAAGAAAAAGAGAGTACTCCTGTTACTTCATTAGGAAGGTGGTGTAGTTTGGCTACTCATACATGTAGTACCCCATGCTACACTTTGTCTCATAACCCCCAAAAACCTTTATGTCACTGtctttgacctctgaccttaGAGAGAGAATGTGAACAAGTCAACTCCTGCTTCTGTTCCCCTCTGGTGAAGAGGGGGGCTTGTCTGAAAGTTCCGGGAGGTAGAGAACCTTGAGAGGTAACATGGCAGAAGCAAACTGACAGCCACAGGCATACAGTCATGCCGTCCATCCTCCGTCCCCCACATCATGGTGAACGGGGATATGGGGTTCTCCTCTTCTTCAGAAGTTGTTTATCTCTATCTCCCTTTGTAATAGCAGCACAATGAAAACCTGCTGCTGAAACTTCCACAGCATAGAGTGTAGGGAAAGCACACATAATTCCCCTTTAGTTACATAAGATTAGCCTGCCACTTTCACTCCTCTGTAAATAGTCACATAAGCTATGCTAATGTATTCAACTGTATTCATTCAGTGAGGCACATCAGAGCACTGATTATTATTATCATTTCCAAGCAAACCAACACATTAATGACATTATTAGGAGCACTCACTAAAGACCACAGCAGACCAGAAGTCTAACAGAGGAATTCTTCAAATCCTACTGATGATCTTGGCACCATAAAAACCTAAATACAGCACCACTATTTCCATATGGCCACCAATTCATCTCAGCTTACTGTATTTAGGCCTGGCGTATGTTTGTAGGTAGTTATCAAGTGACATAGAGAAGGACCAGGAGATGATCTGCTGGCTTTGCCCggagtgtgtgtctgttagtgGCTGGGCCTGTGCTGCTGGAGCAGAGTCGAGGGGGGAAAAAGCTCTGCAGGAACTAATCTGGCGCTGATTTACGGCTACGGTTAAGCTAATAAAAATAGCAAAACAGCCGTGACAAGGCAGAGTGCAGTATTACAGAAATACAGTGGTAGAAAGAACAGTATGGGGAGTTATGGTACGGCCTTTTGCAGTTGACTCAACACCCCGTGCCAAGATTTTCACTCGGATATTCCTATGAACCACTTCACCACCCACCCTTCTTCATgctaaaacatttttattttcctTCTCTGGACTCCAACTGCTGTATGCAATTTGAAATGAATTTTCCCCATTAGAGAGCTGATTATTTTTCATTCTCTTTCTAATTAAGTGCTGAATTCCTGGTAAGGGGAGATTGCTCTGTGTGTGAGTTGACTAATGAAAATAAATACTGGAAAAATGTGTACAATTTAAACAGTAGGCTTACATAATTTAGTGTGAAGGCCCTGAAATATCAGGCtaccacaaagagagagagatgtaccaGGCTTTGATTTCAAAGCCCTTTAAAGCATTTGAATAGAAAGAATGCTTCTCTTTTAGTTTCTCACATATTTCTCGACGGCCGGGACCCAGCTGGGTATAGCCAGtagaacatatttttttaaataaccaagCTATGAATGCAAGCCCTTCCATTATTatagtatgagagagagagagagagagagagagagagtgactctcCACTACtagtatatattttattattttgccGTGGTTGAAGATGAGTTGTATGTATTTTCTATTAACAGGTTGCTTTTTAAAGCAAGTTTCTTTGACATAACTGCGCCACATACATCTGGCTGACCTGTATAGTTTTATAAGAGTTGTGTATAATGACATTGCCTCATATTTATTATCATGTGGAACGATCAACCTGGGAAGTCTCCTGGTCTGTTGAGAGATGATGAGAAACAAAGAATGTTTTAAAACGGATTGGAATGACTGTAAATTATATTCACAACCCTCTGTAAATCTGGt

Function

NR:

description
potassium voltage-gated channel subfamily KQT member 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567748.2 True 2539 mRNA 0.45 6 62749004 62878134

Neighbor

gene id symbol gene type direction distance location
wnt7bb LOC106560992 coding downstream 240594 62471244 ~ 62508410 (-)
LOC110493394 akr1d1 coding downstream 476882 62268804 ~ 62272122 (-)
slc6a13 LOC106560993 coding downstream 490737 62223933 ~ 62258267 (-)
mon2 LOC106560994 coding downstream 531372 62167418 ~ 62217632 (-)
LOC110493282 LOC106560998 coding downstream 1284702 61436215 ~ 61464302 (-)
LOC110501769 LOC106560953 coding upstream 76985 62955119 ~ 62998770 (-)
LOC118941153 mansc4 coding upstream 144834 63022968 ~ 63025781 (-)
LOC110493479 LOC106560987 coding upstream 158255 63036389 ~ 63040509 (-)
LOC110501771 NA coding upstream 173211 63051345 ~ 63053275 (-)
LOC110493488 LOC105029403 coding upstream 179920 63058054 ~ 63089778 (-)
G169418 NA non-coding downstream 6333 62742386 ~ 62742671 (-)
G169407 NA non-coding downstream 26550 62722243 ~ 62722454 (-)
G169392 NA non-coding downstream 40372 62699349 ~ 62708632 (-)
G169391 NA non-coding downstream 44421 62701915 ~ 62704583 (-)
G169397 NA non-coding downstream 59822 62684187 ~ 62689182 (-)
G169528 NA non-coding upstream 24271 62902405 ~ 62902659 (-)
G169544 NA non-coding upstream 51875 62930009 ~ 62930218 (-)
G169545 NA non-coding upstream 52771 62930905 ~ 62945552 (-)
G169555 NA non-coding upstream 70118 62948252 ~ 62948468 (-)
G169559 NA non-coding upstream 74416 62952550 ~ 62952931 (-)
G168141 NA other downstream 1233348 61515237 ~ 61515656 (-)
G168078 NA other downstream 1257333 61490434 ~ 61491671 (-)
LOC110493186 mlkl other downstream 1448912 61290149 ~ 61303507 (-)
G168021 NA other downstream 1492989 61254512 ~ 61256015 (-)
G167866 NA other downstream 1773983 60974762 ~ 60975021 (-)
LOC110493507 LOC106560984 other upstream 268640 63146769 ~ 63224837 (-)
LOC110501772 LOC106560973 other upstream 1081389 63958607 ~ 63963969 (-)
tmem117 LOC106573612 other upstream 1287829 64102056 ~ 64170220 (-)
G172141 NA other upstream 2207438 65085572 ~ 65086188 (-)
G173121 NA other upstream 2505303 65383437 ~ 65383873 (-)

Expression


Co-expression Network