mrps35 (LOC106560988)


Basic Information

Item Value
gene id mrps35
gene name LOC106560988
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63007323 ~ 63022862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567767.2
AGCGCCAAACGACGGTCCCTCTCGACTCGCCATAGGTTGACATTGCCTCCTCAAAAATGGCTGCACATACGTTGAAGAAATCAATTTGGTCCTTAGGACGAATACATTGTCATATTTATGGAGTTAATGTGCGTAACCCGTTAAACAGGGCAACATATGCAACGGCCTTGTCTACCAATCATTCTAGTCAAAATAAAGGCTTTCCTGACAGAGGGAACAAAGGACCTTTCAACCGAAGATCAAGGAGAGAGGCGGGCGACCCCAGGACAGACAGGATGCCTGTAGACCAGGATTGGACTACAGTGTACCCGACCGCTACCCCCTTCAGACAGGGCTCTGTGCCCCTGCCTGTCCGCATGGGCTTCCCAGTGAAGAAAGGGGTGCCCCCAGAGAAGAAGGGCAACCTGGAGCTCATCAAGATTCCAAACTTTTTGCATTTAACTCCATTAGCCATAAAGAAACACTGTGAAGCTCTGAAACCGTTCTGCACAGAGTGGCCCTCTGCCCTGGACACAGGTGCTAAATGTGATGAGCACTTCCCTGTCAAAGTAGAGTGCAAGGACTACGTGTCTGCCGGCACCTCCCTCAGAAACCCATCTGCCCGCATAGTCCACCTCAGACTGAAGCTCTCCTGTCTGAACTTGGACGACCATGCCAGGAAGAAGATGGTTAAACTGGTAGGAGAGCGGTACTGCAAGGACACGGACACACTCGCCATCACCACTGACAGCTGCCCTGTGAGAAAGCAGAATTATGACTATGCCATGTACCTCCTGACTGTCCTCTATCACGAGTCTTGGAAAATGGAGGCCTGGGAGTCAGAGAAGACTGTGGCAGACATGGAGGAGTACAGCTGGGAGGACAGCCCCTCTCAGAAGAACATCATGTCCACGTTGGTCCGCATGCAGGTagcaggggagggggagggagaggcggTGAGGGAGGAGCTGCTGGGGAGGCCGGAGGTGCAGGAGTACAGGGACTCTGTGACCAGACTGAagaacgagggagagagcgagagcagcaTGCACCAGTACAGAGACGCTGTGAAGAAAGTGCTCAACCTTTAATGTGCCCTCTTCTATACATgcagatacacacaaacacacaggagagTGAGCAAGAGCAGAACTCGACTGCTACACACTCGGGGTGACCAATTCGAAGTCTAGAGACAAACCTATCATCTGATTTCACCACACACAGCATTTGATGCCTGTAACGGTCTTTTGTGAAATATTTATTGACAATAAATGAAAGGGCCTATGTTTATATGTCTGTAATACAATTGTTGTATAGGAGTTATGCTAAACTGATAGCCTGAAGCAAAAATGTATTCCTTGCATTTGAAATAAAAAGCTTTAATTTCCTTA

Function

NR:

description
28S ribosomal protein S35, mitochondrial-like

GO: NA

KEGG:

id description
K17413 MRPS35; small subunit ribosomal protein S35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567767.2 True 1373 mRNA 0.50 8 63007323 63022862

Neighbor

gene id symbol gene type direction distance location
LOC118941152 NA coding upstream 79851 62926746 ~ 62927472 (+)
LOC110493442 yars2 coding upstream 269409 62723445 ~ 62737914 (+)
pparab ppara coding upstream 303497 62640508 ~ 62704574 (+)
LOC110493430 NA coding upstream 388486 62562183 ~ 62618837 (+)
LOC118941151 NA coding upstream 476337 62520532 ~ 62530986 (+)
LOC110493518 pus7 coding downstream 203308 63226170 ~ 63238260 (+)
hdac10 hdac10 coding downstream 216190 63239052 ~ 63248916 (+)
parvb parvb coding downstream 226627 63249489 ~ 63262311 (+)
parvg parvg coding downstream 239916 63262778 ~ 63275177 (+)
plxnb2b LOC106560979 coding downstream 502920 63525782 ~ 63710132 (+)
G169613 NA non-coding upstream 4559 63002554 ~ 63002764 (+)
G169611 NA non-coding upstream 4884 63002113 ~ 63002439 (+)
G169603 NA non-coding upstream 11077 62996006 ~ 62996246 (+)
G169592 NA non-coding upstream 19080 62988014 ~ 62988243 (+)
G169577 NA non-coding upstream 30007 62977024 ~ 62977316 (+)
G169641 NA non-coding downstream 3421 63026283 ~ 63026490 (+)
G169646 NA non-coding downstream 7487 63030349 ~ 63030556 (+)
G169651 LOC106560987 non-coding downstream 13793 63036655 ~ 63037957 (+)
G169653 NA non-coding downstream 18836 63041698 ~ 63042006 (+)
G169654 NA non-coding downstream 19727 63042589 ~ 63042801 (+)
G169130 NA other upstream 221680 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 1126899 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 1279869 61726959 ~ 61727454 (+)
LOC110510683 LOC106560954 other upstream 1474996 61525283 ~ 61535728 (+)
G167325 LOC106561003 other upstream 1774778 61232196 ~ 61232545 (+)
G170131 NA other downstream 797599 63820461 ~ 63830320 (+)
G170150 LOC106560975 other downstream 850386 63873248 ~ 63878233 (+)
map1lc3b map1lc3b other downstream 2508284 65531126 ~ 65536787 (+)
jph3 jph3 other downstream 2570655 65593468 ~ 65648660 (+)
G172639 NA other downstream 2912734 65935596 ~ 65936133 (+)

Expression


Co-expression Network