XLOC_020666 (ccnd3)


Basic Information

Item Value
gene id XLOC_020666
gene name ccnd3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 537717 ~ 547760 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040866
TCTGCTCGCGACGATGCGTCGCTGAATTACCAATAAAACATGCAAATCCACGTATGAATTCCGGTTAACGTGGTGTAACAGAGTGTAAGTGTGTTGAGCGCTAATTGAACACAACCTCGCGTCGCACTTGTGACTGACTGTGGAGTATTTGGTGATGGAGTTGTTCTGTCACGAGCGCGCCGATCTGAACTCGAGTTCCCCGGTGAAGAGCGCGCCGATTCGGGCCTTCAGAGACGCGGTTCTAACCCGGGACACCCGAGTCCTACAGAACCTGCTGAGCCTGGAGAAGCCGAACATCAGCGGAAAACACATAGCCGGCGCCGAGAGCGAAGAGCTGCTGCGCATGCGCAAGATCCTCACCGGCTGGATGCTGCAGGTGTGTGAGGAGCAGAAGTGCGAGGAGGAGGTGTTTCCTCTGGCCGTTCATTACCTGGACAGGTACATGTCCCAGAGTGCCGTGCGGCCGTGTCATCTGCAGCTGCTGGGCTCCGTCTGCATGTTTCTGGCCTCCAAACTGCGGGAGACTGTTCCTCTGAGCGCTGAAACACTGAGCATCTACACTGACCACGCCTGCAGCGTCTCCGAGATACTgcagtgGGAGGTGCTGTTGGTGTCACATCTCCAATGGGATCTGGCCTCAGTGCTGCCCTCTGACTTCCTGGAGCTGATCCTGCAGGCGCTGCCCATCCCTGCACAGGACCACAGCAGCgtgcgcagacacacacactgctacATCGCCCTCACGgctacagagCTGAAGTTCTCGTTCTTCCGCCCGTCCGTCGTGGCCTGTTCCTGTGTGACGGCGGCGCTGCTTAGACTGAAGCTCCTGCAGGACACTGTTAGCGCCGAGCAGATGCTGCAGATGCTAAGCAACATGCTGGATATGGACAAGgCGTCTCTGCATGTGTGTTTCTCAGCGCTGGAGCAGATGATCGAGCAGACGCTGCCGGCTCCACCTGTGCAGACGCAGGACGTCCCGCTGTGATGCGAACAGGTTTCAGAGCCCTCACACCTGCGCGATCACGCTCGCCTTTCTGTTTGCGTTTGAGCATGTTCACTTTAATATGGCAGATGTTCTGCACCAGAGCAAATGTTTACCCACAAACCTTtgtcctgtcaaacacacacacacacacacacacagacgggaATCATTTAAACCCCCCGCTGAGAGAGGAGTGTACGTTACTGATAGACTCTCCTGAAGATCAACTGTGTGAACAATAATAAAGAGTCCAGATG
>TCONS_00040867
ACGAGGCTCGCTTCTGCTCGCGACGATGCGTCGCTGAATTACCAATAAAACATGCAAATCCACGTATGAATTCCGGTTAACGTGGTGTAACAGAGTGTAAGTGTGTTGAGCGCTAATTGAACACAACCTCGCGTCGCACTTGTGACTGACTGTGGAGTATTTGGTGATGGAGTTGTTCTGTCACGAGCGCGCCGATCTGAACTCGAGTTCCCCGGTGAAGAGCGCGCCGATTCGGGCCTTCAGAGACGCGGTTCTAACCCGGGACACCCGAGTCCTACAGAACCTGCTGAGCCTGGAGAAGCCGAACATCAGCGGAAAACACATAGCCGGCGCCGAGAGCGAAGAGCTGCTGCGCATGCGCAAGATCCTCACCGGCTGGATGCTGCAGGTGTGTGAGGAGCAGAAGTGCGAGGAGGAGGTGTTTCCTCTGGCCGTTCATTACCTGGACAGGTACATGTCCCAGAGTGCCGTGCGGCCGTGTCATCTGCAGCTGCTGGGCTCCGTCTGCATGTTTCTGGCCTCCAAACTGCGGGAGACTGTTCCTCTGAGCGCTGAAACACTGAGCATCTACACTGACCACGCCTGCAGCGTCTCCGAGATACTgcagtgGGAGGTGCTGTTGGTGTCACATCTCCAATGGGATCTGGCCTCAGTGCTGCCCTCTGACTTCCTGGAGCTGATCCTGCAGGCGCTGCCCATCCCTGCACAGGACCACAGCAGCgtgcgcagacacacacactgctacATCGCCCTCACGgctacagTTCTCGTTCTTCCGCCCGTCCGTCGTGGCCTGTTCCTGTGTGACGGCGGCGCTGCTTAGACTGAAGCTCCTGCAGGACACTGTTAGCGCCGAGCAGATGCTGCAGATGCTAAGCAACATGCT

Function

symbol description
ccnd3 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition; positive regulation of G1/S transition of mitotic cell cycle; and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CCND3 (cyclin D3).

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:1900087 positive regulation of G1/S transition of mitotic cell cycle biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway
ko04390 Hippo signaling pathway
ko04630 JAK-STAT signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04110 Cell cycle
ko04115 p53 signaling pathway
ko04218 Cellular senescence
ko04510 Focal adhesion
ko05200 Pathways in cancer
ko05207 Chemical carcinogenesis - receptor activation
ko05203 Viral carcinogenesis
ko05166 Human T-cell leukemia virus 1 infection
ko05164 Influenza A
ko05162 Measles
ko05169 Epstein-Barr virus infection
ko05165 Human papillomavirus infection

ZFIN:

id description
ZDB-GENE-041010-110 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition; positive regulation of G1/S transition of mitotic cell cycle; and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CCND3 (cyclin D3).

Ensembl:

ensembl_id ENSDARG00000027391

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040866 False 1245 mRNA 0.56 5 537717 547748
TCONS_00040867 True 886 mRNA 0.58 4 539681 547760

Neighbor

gene id symbol gene type direction distance location
XLOC_020665 dstyk coding downstream 31195 472327 ~ 506522 (-)
XLOC_020664 NA coding downstream 141817 392619 ~ 395900 (-)
XLOC_020663 CABZ01072989.1 coding downstream 145493 387073 ~ 392224 (-)
XLOC_020662 ora3 coding downstream 154762 381143 ~ 382955 (-)
XLOC_020661 FNDC10 coding downstream 164994 370915 ~ 372723 (-)
XLOC_020667 bysl coding upstream 3068 550828 ~ 557965 (-)
XLOC_020668 tmcc2 coding upstream 44049 591809 ~ 600016 (-)
XLOC_020669 cdkn1a coding upstream 55622 603382 ~ 607812 (-)
XLOC_020670 srsf3b coding upstream 65505 613265 ~ 622967 (-)
XLOC_020671 apobec2a coding upstream 93582 641342 ~ 651719 (-)
XLOC_020657 NA non-coding downstream 222337 313710 ~ 315380 (-)
XLOC_020646 NA non-coding downstream 436270 101082 ~ 101447 (-)
XLOC_020641 NA non-coding downstream 501601 27146 ~ 36116 (-)
XLOC_020672 NA non-coding upstream 112157 659917 ~ 697504 (-)
XLOC_020673 NA non-coding upstream 152453 700213 ~ 704907 (-)
XLOC_020675 NA non-coding upstream 185484 733244 ~ 735244 (-)
XLOC_020676 NA non-coding upstream 191540 739300 ~ 760886 (-)
XLOC_020684 NA non-coding upstream 470585 1018345 ~ 1023531 (-)

Expression


Co-expression Network