si:dkey-82f1.1 (LOC106560985)


Basic Information

Item Value
gene id si:dkey-82f1.1
gene name LOC106560985
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63090360 ~ 63130536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567812.2
GGTCATGAGAGAAGGAGGGGTGGGAAaagtttgagaaagagagagcggcaAATTCATTGAAAGAGAATATAGatagagagtatgtgtgtgtgtgagtgagagaaggCAAAAGGACAGAATAACTGAAAACATTTCAACCTGAAGGCTGAAAGGGGACGGACCGCCTTGACTTGTCCTTTTTCAAACAAGTTTGTGGAGAATCTTGGAGAAGCTCTTTTTCTGCTTGGGAAGAAGGGGCAGGGTCTATGCTAAGTGAGAGTGCAGCTCAGAGGCAGGGGTGTAAAaccagaggagaaagggggaaaaGGCAATTTTGCTTTGAAGGAAGTCATACCAGTGGATGCTGTCAGTGTCCGATTTCACAAAATGACAAACCACTTCAAGAGCACTTCTACAGGGCTCATCCAGCTGAGAAAGGATGCCAGCTGCTAGCACAATGACTGGTGGGACGGCCCTGCGATTCTGTACCAACACTGACAACTGTGTCTACCAATCAGTCAACGGGCTCCAGTGCTGCGGCTTGACGGTTGGGGAGGCTCCGTCTGCGGTCCCCCAGCGGCCAGACGTGGTGTGTGGGGACAGGGACACCTCCAAGCAGCCCTTCTCCCCCCTGGTCTCCCCTGTAGACGGGCCAGACACCACTGACACCATCCTGGCTCACAGGAGAGCCACCTCGGACCCCCAGACCACCATGGAGCACGGACTGGTCAGCTGCAGCAAACTCAACAAGACATCGGCGTGTCTGAAGACCAGCGCCAGCATCCGGGATAAGATCTCCCAATGGGAGGGAAAAAAGGAGACCCTCCCTACCACCCCGGTGGTTGGAAGTGGTCCATGTCTGCTGACCACAGTGCACAAGGAACCAGAGTCTGTGAGAAAGAAGGAGATCTCGGAGGTCCACAGGCCGGACAGTAAGAGGTTGGTCAGTTGGGAGAGGCAGGACTCTGGGAAGGAGCATGCAGGAAAGCTGGGGGATTTATGGCCAAAGTCACCTGAGGGCCCCACTACCAAGGGGGACCGAGAGGTGATACTGGATAGAGGACCCCTCAGAGGCAGTAGTAAACCCACAGAGACAGCCAAGGAAAATAAGTCAGTTTTGACTCACATTAAGAAACTGGAGCAGGCCATGAAAGAGGGTCCCACCAATCCCTCCTTGGTGTTGCCTGGGAACTATTTCTGCCCTCCTTccgaggagctggaggaggcagagaggagggggaacgaGCCCATATTTGGGACACTGGACGTTATGGGGTCAATGCCTGTGGGGTCATCGCGGCAGCGGAGGACAGGTGACCCTGAGAATGTGTACACTGAGCCTGGCGCTGCCAGTCCCTCCATCAACCCCTTACCTAAACCCCAGCGAACATTCCAGCACCACACCCCTCCCAGCACCCCAGGCTCAGGACTGAGCCTGGGCAAGGGGAGACGTGACCTGCCCCCTCTGCCCTCCATCCCCCCGCCTCCCCTACCCACCTGCCCCCCGCCAGCAGTCTGCAGGAGACCCTGGGCAGACCGAACCCGAGACAGCAGTAACAGGAAGTCCTATGAGTTTGAGGATCTGCTGCAGTCGTCAGAGAGCAGCAGGGTGGACTGGTACGCTCAGTCCCGACTGGGCCTACCACGTACTTTATCAGAGGAAAATGTCTACGAGGATATCCTAGACCCTCCGTCAAAGGAGAACCCTTACGAAGATATAGAGTTGAAGAGAAGTTGCCCTGGAAACAAGCGCTCTttacccatctcctctccctcatcccttgTCCTCGACACACCGGCCAAGctgtCCTCAAAGCCAGGTTTCTTCAGGCAGAACTCAGAACGCCGCAGCTTCAAGCTCCTGGACCTGCGTAAGACCAACCGGGACACCGGCATCTCCTCGCCCTCCCGCATCagccccccctccacccccagcaGCCCTGACGACACTCCCAGTCTCTCAGGAGACCCCTACAACCGCAGACGCAGAAAGATCCCCAAGATGGTGCTGAAGATCAACGGCATCTTCGAGTTGAGGAGAGGGAAGAAACGCATAAAGAGGGTGTCTCAGTCTACTGAGTCCAGctcagggagagTGACCGATGACAACAGTGAGTCCGAGAGTGACACAGAGGAAAAATTGAAAGCTCATAGCCAGCGTCTGTCATCGGTGCAGTCCATGTTGAGGCAGACGGGGCGGTGCCGGACCCTGGAAAGGGGCCCGATGGACCTACAGGAGAGGAAGCTGTTTGAGTACTTCATAGTGGTGGCACTTCAGAATACCAAGGCTGGAGCTCCTTATCTACCAGAGGTCACTCAGCAGTTCCCCATCAAGCTGGAGAGGAGCTTCAAGTTCATGCGGGAAACAGAAGACCAACTGAAGGTCATTCCTCAGTTCTGTTTTCCTGACGCTAAGGACTGGGCCCCCGTTGACAACTTCCCCAGTGAAACTTTCTCCTTCGTCCTGACTGGTGAGGACGGGAGCAGACGGTTCGGATACTGTCGTCGTTTACTGCCCAGTGGTAAAAGCCGGAGGCTGCCAGAAGTCTACTGCATCGTCAGCCGGCTGGGCTGTTTCGACCTCTTCTCTAAGATCCTGGATGAGGTAGAAAAGAGGAGGGCCATCTCTCCAGCCCTGGTGCAGCCCTTCATGAGGGGCATCATGGAGGCTCCATTCCCCGCCCCGGGAAGAACCATCACTGTGAAGAACTTCCTGCCTGGCTCAGGCACTGAGGTGATTGAGCTGTGTCGTCCGTCTGACTCTCGTCTGGAGCATGTGGACTTTGagtgtctgttctcctctctgtcGCTGCGTCTGCTCCTCAGAGTCTTCGCCTCTCTGCTGCTGGAGCGCAGGGTCCTCTTCACCGCTGACAAACTCAGtactctgtctcagtgctgccatgCGATGGTGGCTCTACTCTACCCGTTCACCTGGCAGCACACCTACATCCCTGTGCTGCCCCCTTCCATGCTGGACATAGTATGTACCCCCACCCCCTTCATCGTGGGTCTGCTATCcagctctctgcccagcctcaaAGAGCTGCCCATCGAGGAGGTCCTGGTGGTTGATCTCGGCAACAGCCGCTTCCTCAGACAGCTGGATGACGAGGACTCCATTCTGCCTCACAAGTTGCAGGCTGCTCTGGAACACATTCTGGACAAGAGGAAGGAACTGGCCAGTGAGATGCCCACCGactcGAGCTCCCTCAGCACGGTGGTGTCGGAGACCTTTGTACGTTTCTTCGTGGAGATGGTGGGCCACTACCCTCTCTTCATGGGCGGGGGGGATCGAGAGGACGAGTCTGGAGCCCCCTCCTCGCCCACCCTGTCCTGCTTTCAGCGCGAGGCCTTCCGCAAGGCTGTCACTTCCAAGAGTCTGAAGAGGTTCCTGGAGGTCTTCATGGAGACCCAGATGTTCGCTGGGTTTGTGGCAGAGAGGGAGCAGCGCAGGCAGGGTCTAAGAGgtttGTTTGAGGTGAGGTCACAAGATTACCTGGACTCTCTCCCAGGGAGCGAACAGCGTGGGGTCAACAAGTTCCTCAAGGGTCTAGGAAATAAGATGAAATTCCTGTCCAAGAAATGATGCCTCGGGACGGGACTCCATGAGAGGGAGCATGTTCAAAAGAGGTTGAGAACAAAACACTTTGTCTAAGGACCCAAACTCCCTGTGGATAGCATGAAGAAGGGGATTGTGTGTCCACAAGCTTATGGAGACATACTGGGCAAGGACCGAACACTCCTTGCAATATTTGGACTGAACATGAATGACTTTGGGGGGTGTTGGGGTTTAGCAATCGGACCAAAAACATTCCTATTGTCGCAGCCCCAAAGACACAGACCCATCAAGGAACGTCGTTCTCCTTTGAGGTCTTATCATTCGCGAGTGTCTCTCTGTCGCCCCTGAGAGCTTACTTTTGTAAAGCTGTCGGCCTTTATAGTGTACATTGATGTACTGTATAGCACAGTCCATTTCCATTCCTAGAGTTGAGATAGAATGACTCCACCCACAAACCTGAAAGACTCCACTGAGGATGTTGCTGGTTGGGCCAAAAGACCATTCCATTTTGTACCGTATCGTTTAAACATTCCACATATTTCTATTGAGTACAACTTCTATGTTAACAGGAGGCTTAAGTTAATTTATACTGTGTACTTTTTAAGAGTAACTGTTGCTTCCATTTTCCCTCCTTCAAATGAAAGCAAAATAACATCCTGTAGTTTTGTGATGGGCTGTCTGTATGGAGGAGGGGTCGTAGACCACTGGGTTACTATTGAGGAAATATACCACTGAGACAGAGTGAACTATGGATTGGAATGGGTGTAAGGGAAATTATCAGAAAATCATACCTTGGAGAAGGCAAAGGAGGCCTAAAACAAATTGATATGTAATTGTCAAACACCACTAGTTTTGCCTTAAACCTGATTTGAAAATGTTATGAAATAATTAAAGTTATTTTTAATAAATA

Function

NR:

description
DENN domain-containing protein 2A-like

GO: NA

KEGG:

id description
K20161 DENND2; DENN domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567812.2 True 4451 mRNA 0.53 20 63090360 63130536

Neighbor

gene id symbol gene type direction distance location
LOC110493488 LOC105029403 coding downstream 582 63058054 ~ 63089778 (-)
LOC110501771 NA coding downstream 37085 63051345 ~ 63053275 (-)
LOC110493479 LOC106560987 coding downstream 49851 63036389 ~ 63040509 (-)
LOC118941153 mansc4 coding downstream 64579 63022968 ~ 63025781 (-)
LOC110501769 LOC106560953 coding downstream 91590 62955119 ~ 62998770 (-)
LOC110493507 LOC106560984 coding upstream 16233 63146769 ~ 63224837 (-)
shisal1b kiaa1644 coding upstream 153446 63282662 ~ 63351175 (-)
LOC118944151 NA coding upstream 294268 63424804 ~ 63424856 (-)
LOC118944230 NA coding upstream 382194 63512730 ~ 63512870 (-)
LOC118941165 NA coding upstream 587301 63717837 ~ 63718167 (-)
G169673 NA non-coding downstream 41394 63047642 ~ 63048966 (-)
G169671 NA non-coding downstream 43391 63046764 ~ 63046969 (-)
G169663 NA non-coding downstream 51677 63038228 ~ 63038683 (-)
G169643 NA non-coding downstream 63115 63026960 ~ 63027245 (-)
G170268 parvb non-coding upstream 120866 63251402 ~ 63259031 (-)
G170356 NA non-coding upstream 379071 63509607 ~ 63904078 (-)
G170451 NA non-coding upstream 467293 63597829 ~ 63631175 (-)
G170526 NA non-coding upstream 537352 63667888 ~ 63668507 (-)
G168141 NA other downstream 1574704 61515237 ~ 61515656 (-)
G168078 NA other downstream 1598689 61490434 ~ 61491671 (-)
LOC110493186 mlkl other downstream 1790268 61290149 ~ 61303507 (-)
G168021 NA other downstream 1834345 61254512 ~ 61256015 (-)
G167866 NA other downstream 2115339 60974762 ~ 60975021 (-)
LOC110501772 LOC106560973 other upstream 828987 63958607 ~ 63963969 (-)
tmem117 LOC106573612 other upstream 1035427 64102056 ~ 64170220 (-)
G172141 NA other upstream 1955036 65085572 ~ 65086188 (-)
G173121 NA other upstream 2252901 65383437 ~ 65383873 (-)

Expression


Co-expression Network