shisal1b (kiaa1644)


Basic Information

Item Value
gene id shisal1b
gene name kiaa1644
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63282662 ~ 63351175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567916.2
aactctctggctctctcccctctctctctcactccctcactcacttcAACTctagctctctccttctctctctcactcacactctcgcTGAGCTCTAACCGCTTGGATACAGTGCAGAGGACTTGGGGAGAGTGCTCTTTTCTTCTTCTGCgtttccttccctcctctctccctcgagAGCTATTGATTTAGATCAATTCATTGGGATGAGGATGCGTTTGCGTTAAGCTGCAACAAAGGAAGAGTGCACAAGAAGCAACAGGGGAGTAATTGACTGCACAGAGAAAcaggagacccccccccccctttacaggCTCAACAAGGGTGGCCGGTTGGACAACAGCAGCCATGTGATTGGGGGGTGGCAAAAAGCAAAGAATGTCCAGGAGGTTCAGCTAAAGCAGCCCTGCAGTGAGAATCTCCCCCTCTGGCGCCTGTTCTTCATGAGGACCCGAAGATGACTGTCACCAGCCGGCAGTCCTTGAATGTCCTGACAGTCATCTTTCTCCTGCTGTCCACTGCAGCTCTATCAGCTCATTTCAGAGTGTGTGAACCATACTCCGACCACAAGGGGCGCTATCACTTTGGTTTCCACTGCCCTCGCCTTTCCGACAACAAGACCTACATGTTCTGCTGTCACCACAACAACACTGCCTTCAAGTACTGCTGCAACGAGACTGAGTTCCAGACGGTCATGCAGGTCAACCTGACTACCACCACAGACGGCTTCAAACACAATAACTACACAGCCCTGGTGGGAGTGTGGATCTATGGCTTCTTCGTCATGGTGCTGCTAGCCCTGGACTTCCTCTACTACTCGGCCATGAACTATGAGCTGTGTCGGGTTTACCTGGAGAAGTGGGGTCTGGGTGGGCGCTGGCTGAAGAAAGCCAGGAGCCAGTGGCACCAGCCAGTCccaggagaggagactgagacCCAGGCACAGACCCAGGGTCACCCCATGGCCCTCAGCCACCAGCACCCCAGACACAGCCTCAGAGGAGAGGACCAGAGCCCCACGAACCCTAGCACGCCCCCACCGTCTGACTGAAGCTGCGAGAGGATGAATGGACGGAGCAGCGATGTTGAGCAGAGCACGCCGCAGAAGATAGCACGGCTCCGacacctgtctctgtctggctggaCTATCTACACAGTAACATACCACAGGGTGGCTGTCCCTGCCGGAGCTAGCAGTTAGCTAATAGGACCTGCTCGCCTCCATTCCTCTAAACACCTCCACCACTGGACCAACGGAACCAGGCCAAAGGTCAACACTAGACTACTATGAAAGGTCCTGGCGAATGGAGCTGCTGCTACCCAAACACTGTTATGGAACAGGTCACAGGCACTGAAACTGACCATGAAGAACCCCTGCATGGGCTGGGGCTGTTCTACGAGGATGCCAATGGAAACTGAAAGCGCAACTGATCAACTGAACAAGGGGGGCTttgtttaatgtgtgtgtttgagtgttgaTTGTACTTTGTTGCTGTGTGGGGTTAAATTCAGTAGTAGTCAGAAGAGGTAGTGGGTGTTTCTCTTGGAGATTTATTTAATGTCGACTAGTCAGGGACTTTTTACGAGTGGtagacattctagatgattcacCATGATGCTTAGCATCTCTTTGGAGCTAAAATTAGGACATCGACTGGCTCAATCGCTGAGGATAGATATAATTGGACGGTGAATTCTATGGAACAGACATATTTCAGCATAATGAACCTTAATTGAATACGGTGGCCCCTCCCCTTCAAGTCACCCTGTCAGCTCAGCAATCAGGGAGAGTGGAGTGCTGACAAAATAATCACTTCAGTGGTTCCCACTGAAAGGTGTCACACTGCAAAACAAAAAGTGAAATCTAAGCAAGTATAAATATCTTCTATTGAAATATCTTTCTTGTTTTTTCAAACCAAGCTAAATTATCTAACGTCAGTGGCAGATCATTTTATTTAGGCTTGCTTAAATGTCACTTTTTGCAGTGTAGTGCACAGGGAGGGGATAAAGCTCAACACTTCACTCATTTCTGACATGAACTTTCGTATTGATCCATAAAGTGCCGTTTTTGTTGTGTtgggaggggtgagaggataAAGCATCTGTTCGGGTCAGCAGACTGGGAGGGGGATGGAGTGTGATGGGGGAAGACCAGGCGGTATATAATACTGTACCAGGGTATGTCTCTACTCACTCTCCTCACTCTAACCCAATTCTGGAGCTGTAACCTGCGATCTGGCAGCAGCTTAGCCGGAACATTATGTGCAGAGAATTCCTGCACTGTACACACCGTGCAGCAGGAAATACACTACAGGGTCATTGGTAGAGGCCAACCAAGAGGGCAGACCCATAAATGGTTCTCTGGGAGTTACTGGAAATACCACCAATACTCCTGAACAGGCACTAGGCAGGAGGAGCAGGACAACTATCCCCAATATACTAAAATGGCAAACTCAACCTGCCAATTTATTCCAATGATTTAAATAAATTGTTTTGTCAAGATCTAGCTTCATAAATTCTCTGAAGTGAGCAGGCCCCAAAAAAGAAAATGTTACCATCTTCTGTTACAACAATGACCATGGCTggcaatatacactgagtgtacaaaacatgaagaactctttccatgacagagtgaccaggtgaatccaggtgaaagctatgatcccttcttgatgtcacttaaatccacttcaatcagtgtaggtgaa
>TU193710
CTAACCGCTTGGATACAGTGCAGAGGACTTGGGGAGAGTGCTCTTTTCTTCTTCTGCgtttccttccctcctctctccctcgagAGCTATTGATTTAGATCAATTCATTGGGATGAGGATGCGTTTGCGTTAAGCTGCAACAAAGGAAGAGTGCACAAGAAGCAACAGGGGAGTAATTGACTGCACAGAGAAAcaggagacccccccccccctttacaggCTCAACAAGGACTGAAGCTGCGAGAGGATGAATGGACGGAGCAGCGATGTTGAGCAGAGCACGCCGCAGAAGATAGCACGGCTCCGacacctgtctctgtctggctggaCTATCTACACAGTAACATACCACAGGGTGGCTGTCCCTGCCGGAGCTAGCAGTTAGCTAATAGGACCTGCTCGCCTCCATTCCTCTAAACACCTCCACCACTGGACCAACGGAACCAGGCCAAAGGTCAACACTAGACTACTATGAAAGGTCCTGGCGAATGGAGCTGCTGCTACCCAAACACTGTTATGGAACAGGTCACAGGCACTGAAACTGACCATGAAGAACCCCTGCATGGGCTGGGGCTGTTCTACGAGGATGCCAATGGAAACTGAAAGCGCAACTGATCAACTGAACAAGGGGGGCTttgtttaataaagtgaggcagcatcagcaacaagGAAGCCCGGAGGAGCAGGAATTTTAAACAGCTTCTGCAGTACAAAAGGGGATTTAATTGGGCCTCAAAACAGGGGAATTGGCAGAGATCAGATGTGCTCGGGAACACACGTCTCCCCCGGAACCTCAGTGCTGTTTTGCTGTAACAAGGCTGTGAGCAGGGAATTCCCTTCCTATCGACAATATGTAGTGGTGATAACTAGGGTAATGCCCCTGCCCTAGCAGGCAGACATGTCATGTAGGCTACAGCCCAACAGTTGCCCCTCTTATCGTAGCAATGATAATGGGGAGCCAAACTGCAGCCCTCCCCAAACTGGAAGCCCAAACAAGCTCTGTGGTGTTGTTGTTTTACAAGGCAAATCTGACTTTCTGTTTTGCTTTCTTAACATGGACTTGACGTGACATAGTCAATATTGTAAGCATTGCTGTAAGGATGGCAGCGCACTTATGTTTTAGTCTTGAGGTTGCTGTAGTAACAGTTGCCTTACAGTGGATCTCCACTTGTGCACAGAAGCTTTGTAGTGATTGGTCGGTACCTCACTGTGGGTGTGGTGATGATGACCTGCACCACGTTCTGTCTATGTATTACCCACTAGAATGTACAGTTAGAAGCTGAATTGTTTCTGCACTTGTTAACTTTGTATTGTTACACCAGGG

Function

NR:

description
PREDICTED: uncharacterized protein KIAA1644 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567916.2 False 2711 mRNA 0.49 5 63283982 63351175
TU193710 True 1324 lncRNA 0.49 3 63282662 63351081

Neighbor

gene id symbol gene type direction distance location
LOC110493507 LOC106560984 coding downstream 59145 63146769 ~ 63224837 (-)
si:dkey-82f1.1 LOC106560985 coding downstream 153446 63090360 ~ 63130536 (-)
LOC110493488 LOC105029403 coding downstream 194204 63058054 ~ 63089778 (-)
LOC110501771 NA coding downstream 230707 63051345 ~ 63053275 (-)
LOC110493479 LOC106560987 coding downstream 243473 63036389 ~ 63040509 (-)
LOC118944151 NA coding upstream 73629 63424804 ~ 63424856 (-)
LOC118944230 NA coding upstream 161555 63512730 ~ 63512870 (-)
LOC118941165 NA coding upstream 366662 63717837 ~ 63718167 (-)
appl2 LOC106560977 coding upstream 393875 63745050 ~ 63761413 (-)
nuak1b LOC106560975 coding upstream 522065 63873240 ~ 63904118 (-)
G170268 parvb non-coding downstream 24951 63251402 ~ 63259031 (-)
G169673 NA non-coding downstream 235016 63047642 ~ 63048966 (-)
G169671 NA non-coding downstream 237013 63046764 ~ 63046969 (-)
G169663 NA non-coding downstream 245299 63038228 ~ 63038683 (-)
G170356 NA non-coding upstream 158432 63509607 ~ 63904078 (-)
G170451 NA non-coding upstream 246654 63597829 ~ 63631175 (-)
G170526 NA non-coding upstream 316713 63667888 ~ 63668507 (-)
G170528 NA non-coding upstream 318428 63669603 ~ 63670303 (-)
G170551 NA non-coding upstream 352858 63704033 ~ 63704831 (-)
G168141 NA other downstream 1768326 61515237 ~ 61515656 (-)
G168078 NA other downstream 1792311 61490434 ~ 61491671 (-)
LOC110493186 mlkl other downstream 1983890 61290149 ~ 61303507 (-)
G168021 NA other downstream 2027967 61254512 ~ 61256015 (-)
LOC110501772 LOC106560973 other upstream 608348 63958607 ~ 63963969 (-)
tmem117 LOC106573612 other upstream 814788 64102056 ~ 64170220 (-)
G172141 NA other upstream 1734397 65085572 ~ 65086188 (-)
G173121 NA other upstream 2032262 65383437 ~ 65383873 (-)
zcchc14 zcchc14 other upstream 2183296 65530911 ~ 65571025 (-)

Expression


Co-expression Network