XLOC_020668 (tmcc2)


Basic Information

Item Value
gene id XLOC_020668
gene name tmcc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 591809 ~ 600016 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040869
GAGACGAGAGATCCGCGAGGAACAGACGACGCAGAGATGCGGGAGAGAAAACACAGCTGAAACCCTCTCGGCTGTAAACCATGACcgacagatagagagagagatagagggagagagagagagagacatggcCCTCTCAAACATCTCCGCAGTGAAGCTGCACGTCCTGGACTGAAGACCATGCTGGATAAGAGCGAGGTGTCTACTCTGGCTCTGCCGCCCCCCGTGAGCCATGGCGGGTCAGACGGGAACATCAGCGTGGAGGCCGGGTCTGAGGGCGAGATACAGCGGACGCGGGCGGCTCTCGAACACCTCCAGCAGAAGATCCTGAAGATCACGGAGCAGATCCGCGTGGAGCAGGAGGCCCGGGACGATAATGTGGCTGAGTACCTCAAACTGGCCCACAACGCCGACAAGCAGCAGGCGTCGCGCATCAAACAAGTGTTCGAGAAAAAGAACCAGAAGTCTGCGCAGACCATCGCACACCTGCACAAGAAGCTGGAGCACTACCACAAGAAGCTCAAAGAGACCGAACAGAACGGTCCAGCACGGCAGCCCAAAGACGTCCTGCGGGACATGCAGCAGGGGCTGAAGGATGTGGGAGCCAATATGCGAGCAGGAATCAGCGGTTTTGGAGGAGGCGTGGTGGAGGGAGTGAAAGGCGGAGTCTCGGCGCTCACACACACCGCCGTCGTCTCCAAACCCAGAGAGTTCGCCAGTCTCATTCGGAACAAGTTCGGAAGCGCCGACAATATCGCACATATGAAGGACACTCTGGAGGACGGACACGCGGAGGAGACGCCCAGAGCTCTGAGCGGCAGTGCTACGCTAGTCTCCAGCCCCAAATACGGCAGTGATGATGAGTGTTCCAGCGCCACCTCTGGATCCGCAGCGGGCAGCAACTCTGGCGGAGCCGGCGGCGCCCTGTCGGGAATGGGAGCAGCCATGGGCAGCCCTCGACTGGAcggacaccaccaccaccatcaccaccaccacacCTCGTCCTCCTCCTGGGACGCGCTGCTGGAAGGCCTGCAGGAGATCAAGGTGGGTCAGGTGCACATGGAGGACGCCATCGACGACATGAAGGCGCAACTCCAGAGCGACTACAGCTACATGACCCAGTGCCTGCAGGAGGAGCGCTACAGATACGAGCGGCTGGAGGAGCAGTTGAATGACCTGACAGAGCTTCACCAGAACGAGATGAGCAATCTGAAGCAGGAGCTGGCCAGCATGGAGGAGAAGGTGGCGTACCAGTCGTACGAAAGAGCGAGAGACATCCAGgagGCGGTGGAGTCCTGCCTCACCCGCATCACCAAGCTGGAGCtgcagcagcaacagcagcaggTGGTGCAGCTGGAGGGTGTGGAGAACGCAAACGCCCGCGCGCTGCTGGGAAAGCTGATCAACGTGATCCTGGCGCTGATGGCGGTGCTGCTGGTGTTCGTCTCCACCATGGCCAACTTCATCACGCCGCTCATGAAGACGCGGGCGCGGGTCGGTGCCACCGTCGCCCTGGCGCTCTTCCTGGTCACACTGTGGAAACACTGGGACTGGCTGGAGCTCTGTTTGCTGCCCAGCTGAAAGACCTACGAAATGCACAACATCGGAACTTCGATTCATCCCCATTATTGGAGCAGATGTGCACGAGAGCTTGAAGGATGTATAAAAACGATCCCTCCATTGCTTCAGTGCGGAGATACGAGGCTCGAAGAAGGTGCTCGACGTTTCTCCTCTGAATGGATTCCCTTTTTTTACAGCAACTGATGAATGTTAAAGctggagagcgagagagagagtggtCTTCTGCTGATGCATGGCTTTAATACATTACACCGTCATGTTTCAGATCCAGACGTCTGAAGGAACTCTACAACGCTGACACCAAAACTGTCCGGGAAGTGTGTTGCGTTTAGTTTATTCCGTCTCTTGTGGAACTCAAtgtctgttgtaaaaaaaatatctctTTA

Function

symbol description
tmcc2 Predicted to be involved in amyloid precursor protein metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC2 (transmembrane and coiled-coil domain family 2).

GO:

id name namespace
GO:0042982 amyloid precursor protein metabolic process biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091202-2 Predicted to be involved in amyloid precursor protein metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC2 (transmembrane and coiled-coil domain family 2).

Ensembl:

ensembl_id ENSDARG00000046007

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040869 True 1970 mRNA 0.57 5 591809 600016

Neighbor

gene id symbol gene type direction distance location
XLOC_020667 bysl coding downstream 33844 550828 ~ 557965 (-)
XLOC_020666 ccnd3 coding downstream 44049 537717 ~ 547760 (-)
XLOC_020665 dstyk coding downstream 85287 472327 ~ 506522 (-)
XLOC_020664 NA coding downstream 195909 392619 ~ 395900 (-)
XLOC_020663 CABZ01072989.1 coding downstream 199585 387073 ~ 392224 (-)
XLOC_020669 cdkn1a coding upstream 3366 603382 ~ 607812 (-)
XLOC_020670 srsf3b coding upstream 13249 613265 ~ 622967 (-)
XLOC_020671 apobec2a coding upstream 41326 641342 ~ 651719 (-)
XLOC_020672 NA coding upstream 59901 659917 ~ 697504 (-)
XLOC_020673 NA coding upstream 100197 700213 ~ 704907 (-)
XLOC_020657 NA non-coding downstream 276429 313710 ~ 315380 (-)
XLOC_020646 NA non-coding downstream 490362 101082 ~ 101447 (-)
XLOC_020641 NA non-coding downstream 555693 27146 ~ 36116 (-)
XLOC_020675 NA non-coding upstream 133228 733244 ~ 735244 (-)
XLOC_020676 NA non-coding upstream 139284 739300 ~ 760886 (-)
XLOC_020684 NA non-coding upstream 418329 1018345 ~ 1023531 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00427652_00430661 TMCC2 coding CI01000186 null 427652 ~ 431316 (+)