LOC110493646 (irak4)


Basic Information

Item Value
gene id LOC110493646
gene name irak4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64180281 ~ 64188853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568039.2
ACAAAAGTGGAACCATGTCacgtgatacattttttacactaGGGAAGTTGCTCAATCTCgggaacaaaaaaaacatttttttttagggTACTTCAATGAACAAGGAAATAGATATATATAAAAACGAAATCTAGATACGTTACCGAGGATGAGCAACACAATAACATCGGCTACATTTATTCGAAACCTCAACTATGGGGTTCGACGAAAACTGTCTGACTTATTGGACCCTCAAGACAGCTGGAAAGACGTTATTGTTTCAATACATAAACCCACAGGGGAGCCGAGGTACTCTCAGCAACATCTAAGGCGATTTGAAGCAGTGGTTTTACAGGGAAGAAGTCCTACCATGGAGCTACTGAATGACTGGGGGACATCTAACTGCACCGTGGGAGAGTTAGTGGACATTCTGATGAGCCACAGGTTAATGGCTGCAGCCAGTATTATTCTACCAGATGCAATCAACAACCCCCGTCCAGCAGTCCCCCAGCCACCTGATTCTCCCAGAGACAAAGAGATGGTAGGCAACAGCGATGCTGCAACAAGACCCCTGGGGAGGACAGAGGCACAGACAAAGGAACAGCCACCACCAGACAGCACCTCGGAGCCACAGGAGGACCCGGAACCCAATGGCACTGCAGGTTTTCTCAGGCTTTCTTTCCACGAGCTGAAGAAGATAACTGGTCATTTTGACGAGAGGCCAGTGAGTGAAGGTGGGAGCAGACTTGGTGAGGGCGGCTTTGGAACGGTCTACAAAGGCCTCATCAATGGCAAACCTGTGGCAGTGAAGAAACTACACTCAATGGAAGACATCTCACTTGAAGAGCTGAGCGTTCAGTTCATTCAAGAGGTCCAAACTCTTATGGTGTTGAAACACGAAAACCTAGTAGACATGGTTGGCTTTTCCCGTGATGGCCATCACCCCTGTTTGGTGTATGCTTACATGTCCAATGGTTCATTGCTAGATCGTCTGGCTTGCTTGGATGGTAGCCCTCCTCTTTCCTGGCACAGGAGATGTTTGATCGCTGTGGGAACGGCCAGAGGCTTAGATTATCTGCACAGCAACCACCATGTCCACAGAGATGTCAAGAGTGGTAATATTTTGCTGGATGAATTGCTTGTGCCGAAGATCTCCGATTTTGGGCTGACCCGAGCCTCAGCCACGCGATCGTCAGCGACAGTGATGACAGAGAGGATTGTGGGTACAACAGCATACATGGCAAATGAGGCACTCAGGGGCGAGATCACTCCTAAATCTGACATCTACAGTTTTGGAGTGGTGTTGCTAGAAATATTGTCTGGACTCCCGCCAGTCGATGAAAACCGTGATCCCAAGTTCCTGATGGAGATGAAAGATGAGATTGATGAAGAGGAGATGGCCCTGGAGGACTTTGTGGACAAGAAGATGACAGACTGGGACCTGCCATTGGTGGAGAGGACCTACTTCTTAGCGAGCGACTGTCTCAGTGACAAGAAGAACAAACGGCCACTGATGGAAGAGgtcctgacagagcttgaagatgtTGTCAAAAGCATTTCACTGGAACAGCTGGGACCCCAGAGTGAAGCATAGACAACAGGAAGAACGACTATCCCTCACTCATTTTCTTAAAGTTTACTTTGCTGAAGAAAAGGACCAAACATGTTACACCagtcttttgtatttttttgccaaaataataaatatattttacatcttTGTTGAA

Function

symbol description
irak4 Predicted to enable ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Acts upstream of or within positive regulation of transcription, DNA-templated and response to bacterium. Predicted to be located in cytoplasm. Is expressed in brain; gill; heart; immune system; and liver. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human IRAK4 (interleukin 1 receptor associated kinase 4).

NR:

description
interleukin-1 receptor-associated kinase 4 isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04733 IRAK4; interleukin-1 receptor-associated kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568039.2 True 1706 mRNA 0.47 12 64180281 64188853

Neighbor

gene id symbol gene type direction distance location
tmem117 LOC106573612 coding downstream 10061 64102056 ~ 64170220 (-)
LOC110501774 NA coding downstream 208957 63968729 ~ 63971324 (-)
LOC110501772 LOC106560973 coding downstream 216312 63958607 ~ 63963969 (-)
nuak1b LOC106560975 coding downstream 276163 63873240 ~ 63904118 (-)
appl2 LOC106560977 coding downstream 418868 63745050 ~ 63761413 (-)
tesmin LOC106560967 coding upstream 201298 64390151 ~ 64400478 (-)
LOC110493697 LOC106561117 coding upstream 217207 64406060 ~ 64410316 (-)
ppp6r3 NA coding upstream 262449 64451302 ~ 64469833 (-)
lrp5 LOC106560964 coding upstream 286449 64475302 ~ 64526381 (-)
wu:fa25f02 LOC106560963 coding upstream 340221 64529074 ~ 64540391 (-)
G171136 LOC106560972 non-coding downstream 94730 64084388 ~ 64085551 (-)
G171118 NA non-coding downstream 169148 64004272 ~ 64011133 (-)
G170625 NA non-coding downstream 320418 63859632 ~ 63859863 (-)
G170573 NA non-coding downstream 435995 63741903 ~ 63744286 (-)
G170520 NA non-coding downstream 444931 63733310 ~ 63735350 (-)
G171265 NA non-coding upstream 13059 64201912 ~ 64202219 (-)
G171279 NA non-coding upstream 32521 64221374 ~ 64222667 (-)
G171378 NA non-coding upstream 190154 64379007 ~ 64381802 (-)
G171357 NA non-coding upstream 199305 64388158 ~ 64389035 (-)
G171416 NA non-coding upstream 281743 64470596 ~ 64471072 (-)
LOC110493507 LOC106560984 other downstream 1029430 63146769 ~ 63224837 (-)
G168141 NA other downstream 2664625 61515237 ~ 61515656 (-)
G168078 NA other downstream 2688610 61490434 ~ 61491671 (-)
G172141 NA other upstream 896719 65085572 ~ 65086188 (-)
G173121 NA other upstream 1194584 65383437 ~ 65383873 (-)
zcchc14 zcchc14 other upstream 1345618 65530911 ~ 65571025 (-)
G173370 LOC106560927 other upstream 1644488 65833341 ~ 65839074 (-)
G173431 NA other upstream 1732997 65921850 ~ 65922229 (-)

Expression


Co-expression Network