tesmin (LOC106560967)


Basic Information

Item Value
gene id tesmin
gene name LOC106560967
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64390151 ~ 64400478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568081.2
agtcacaccagggtaagcctacacaaaacacagcccttattttaagtgtttcaaAATCCCCTATGGGCAAAAGGAATGGTgggaaaacgattggaaccatttccctattTGACTGCttggttttatgggtattatgacacgtccACTGTGGGGCTTTATCTAGGTTGTGTGCAACATGAGTGGCCGAGGGCAGATGGTGGTAATGAACCATTGTAGCCCAGGTCAGATGCTCCACTCTTTGCCTCCTGGCCACCCTGACTCCAGTCCAGAGACCCACTACTACACCACATCCTCTAAGGAAAACTCAGAGCAGAGCTACTCAATGGGAAAAGCTTCTCAGTCCTACCTGCCCTCTATTAGCCTGCCTCCCATTGGGCCCAACCACGGCCTCCTTTCCCCCAACCATCTGGTTTTCTCTGGTCCTCCTAGCTCTGGATACAGCTACAACCACATACCTGCACCCTACTTCTCACAGTACCACCAGTATCCTGAGTATCCTGACTCCCTATGCATGGTCCCTGATGGTCAGTCCACGGCAAGCAGTGTCTTACGTCTCAGTGGATctctatgggactccaaatccaaGAAGCCCTGCAACTGCACTAAATCTCAGTGTCTCAAACTTTACTGTGACTGCTTCGCTAACGGCGACGTCTGCAGCAACTGCAACTGCATCAACTGCTGCAACAACAATGAGCACGAGTCAGAGCGATACAAGGCCATCAAGATTTGTCTGGACAGAAATCCCGAGGCGTTCAGACCAAAGATTGGAAACGGGAAACTGGGAGAGATCAAAGGACGCCACAACAAGGGCTGCAACTGCAAACGCTCAGGCTGTCTGAAGAACTACTGCGAGTGCTATGAGGCCAAGATAATGTGCTCATCCACCTGTAAGTGTGTGGGCTGCAGAAACTATGAGGACAGTCCAGAGAGGAAGACCATGGTGTGGGACAGCCCTGACACCACCTTCTACAAGAAGGCCAAATGTGACAAGGACAAGTGTCCTCTGTCGTGCATCACGCTCGACGTCGTGGAAGCCACATGCGGCTGTCTTCTGGCGCAAGCAGAGGAGGCTGAGAAGGAAGGCTACACGCTGTGTCAAGCTGAGAAAATGATTTTGGAGGAGTTCGGCCAGTGTTTGACGCAGATTGTTCGGTCAATATTTAAATCTACTAGCTCGTAGATAGAATCTCATGTAGGACAAGTTGATTAACATTTTGGATATGGTCTGTTCTAGACATGATGACATTTAAACTGCCATTTTTTAGCAACATGTTTATTAACAAGATGTTGTGAATTGTGTATGCGTATGTATTTATTTCTTACATAATTGATTTATGCATGTATTTATGAGTTAATTTATTTAACTTATTCACTCACTTTAGTTTAAGTCTCAGAATGGAGGACAGTTCCATCAGCTTTGGGTCATATGTCATTGGTTTGAAATatgaattttaaaaaaaatagttattGTGAACAATTCTTTCCATTTCTTTCATCCTTTCTTTTTAAGCTGCAGAAAGAACGTTTAATTTTATGCAAATGTCCCTGTTGAGTCTCTGTTAAAATACAACATCCAAATGTACTGATGAGCATTCtgtgaaaataaaatattaaattcc

Function

NR:

description
protein lin-54 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568081.2 True 1622 mRNA 0.45 8 64390151 64400478

Neighbor

gene id symbol gene type direction distance location
LOC110493646 irak4 coding downstream 201298 64180281 ~ 64188853 (-)
tmem117 LOC106573612 coding downstream 219931 64102056 ~ 64170220 (-)
LOC110501774 NA coding downstream 418827 63968729 ~ 63971324 (-)
LOC110501772 LOC106560973 coding downstream 426182 63958607 ~ 63963969 (-)
nuak1b LOC106560975 coding downstream 486033 63873240 ~ 63904118 (-)
LOC110493697 LOC106561117 coding upstream 5582 64406060 ~ 64410316 (-)
ppp6r3 NA coding upstream 50824 64451302 ~ 64469833 (-)
lrp5 LOC106560964 coding upstream 74824 64475302 ~ 64526381 (-)
wu:fa25f02 LOC106560963 coding upstream 128596 64529074 ~ 64540391 (-)
mespab LOC106560948 coding upstream 200436 64600914 ~ 64602076 (-)
G171357 NA non-coding downstream 1116 64388158 ~ 64389035 (-)
G171378 NA non-coding downstream 8349 64379007 ~ 64381802 (-)
G171279 NA non-coding downstream 167484 64221374 ~ 64222667 (-)
G171265 NA non-coding downstream 187932 64201912 ~ 64202219 (-)
G171136 LOC106560972 non-coding downstream 304600 64084388 ~ 64085551 (-)
G171416 NA non-coding upstream 70118 64470596 ~ 64471072 (-)
G171420 NA non-coding upstream 127997 64528475 ~ 64528793 (-)
G171458 NA non-coding upstream 154695 64555173 ~ 64555423 (-)
G171459 NA non-coding upstream 157145 64557623 ~ 64557888 (-)
LOC110493507 LOC106560984 other downstream 1239300 63146769 ~ 63224837 (-)
G168141 NA other downstream 2874495 61515237 ~ 61515656 (-)
G168078 NA other downstream 2898480 61490434 ~ 61491671 (-)
G172141 NA other upstream 685094 65085572 ~ 65086188 (-)
G173121 NA other upstream 982959 65383437 ~ 65383873 (-)
zcchc14 zcchc14 other upstream 1133993 65530911 ~ 65571025 (-)
G173370 LOC106560927 other upstream 1432863 65833341 ~ 65839074 (-)
G173431 NA other upstream 1521372 65921850 ~ 65922229 (-)

Expression


Co-expression Network