LOC110493697 (LOC106561117)


Basic Information

Item Value
gene id LOC110493697
gene name LOC106561117
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64406060 ~ 64410316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568113.2
GAATCATCCTAACCCAAACGAGAATCACTACATGGACATTGAAGTTCTCTCCTCATCTATGAGCATACCTATTTTGAATAAAGCCTTATAGACGTTTACATTATATTTTCTCTTCCACCCTTGAACAAAACTTTAAAGATGCAGAAGTCTATTGGAGTAGTTTGCATATCACTCATTTTCTGCGCAGCTCTGTCAGAAACAATTGGATTAGTGATTGCGGCTAAAGAGAAGCGAGGATGGACACTGAACAGTGCTGGCTACCTTTTGGGTCCTCGTCGTATTGATCACCTAATACAGATAAAGGATAATCCCAGCGTAAGGGGGAGAGAAGAACTGCTAAGTCAATATGGCATCGACGGTCACCGGACGCTCAGTGACAAGCATGGCCTTGCTGGTAAGAGAGACATGCCCCGGGACTATGACTTCAAATCAGGTTCCTTGAGAATAACAGATGAGGATGTATTACACAATGTCATTGACTTCTTATCATACATGCAACTTAAAGAAATCGGAGCTCTGGATACCCTGCCTTCCTTGCTCACATCAGAAGAGATGAGTCAGCCCTAGTTCAACTTCAACATTCATTGATCTATTCTCAACTCTTCAAAAGCCTGCAAAGTACATTGTCTGTGCATATCCCATTATACTGGATACTGGTGTCATGATTTACAACAATCTCCTATACAGAGTAAACATGTTCCTATTATAATTTGAAAGAAATGTATTGAATAAAACTTTTTGAATGGCAATACTTTTTTGTTCCTAT
>XM_021568122.2
GAATCATCCTAACCCAAACGAGAATCACTACATGGACATTGAAGTTCTCTCCTCATCTATGAGCATACCTATTTTGAATAAAGCCTTATAGACGTTTACATTATATTTTCTCTTCCACCCTTGAACAAAACTTTAAAGATGCAGAAGTCTATTGGAGTAGTTTGCATATCACTCATTTTCTGCGCAGCTCTGTCAGAAACAATTGGATTAGTGATTGCGGCTAAAGAGAAGCGAGGATGGACACTGAACAGTGCTGGCTACCTTTTGGGTCCTCATGGCATCGACGGTCACCGGACGCTCAGTGACAAGCATGGCCTTGCTGGTAAGAGAGACATGCCCCGGGACTATGACTTCAAATCAGGTTCCTTGAGAATAACAGATGAGGATGTATTACACAATGTCATTGACTTCTTATCATACATGCAACTTAAAGAAATCGGAGCTCTGGATACCCTGCCTTCCTTGCTCACATCAGAAGAGATGAGTCAGCCCTAGTTCAACTTCAACATTCATTGATCTATTCTCAACTCTTCAAAAGCCTGCAAAGTACATTGTCTGTGCATATCCCATTATACTGGATACTGGTGTCATGATTTACAACAATCTCCTATACAGAGTAAACATGTTCCTATTATAATTTGAAAGAAATGTATTGAATAAAACTTTTTGAATGGCAATACTTTTTTGTTCC

Function

NR:

description
PREDICTED: galanin peptides-like isoform X2

GO: NA

KEGG:

id description
K05244 GAL; galanin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568113.2 False 766 mRNA 0.40 7 64406060 64410316
XM_021568122.2 True 691 mRNA 0.40 6 64406063 64410316

Neighbor

gene id symbol gene type direction distance location
tesmin LOC106560967 coding downstream 5582 64390151 ~ 64400478 (-)
LOC110493646 irak4 coding downstream 217207 64180281 ~ 64188853 (-)
tmem117 LOC106573612 coding downstream 235840 64102056 ~ 64170220 (-)
LOC110501774 NA coding downstream 434736 63968729 ~ 63971324 (-)
LOC110501772 LOC106560973 coding downstream 442091 63958607 ~ 63963969 (-)
ppp6r3 NA coding upstream 40986 64451302 ~ 64469833 (-)
lrp5 LOC106560964 coding upstream 64986 64475302 ~ 64526381 (-)
wu:fa25f02 LOC106560963 coding upstream 118758 64529074 ~ 64540391 (-)
mespab LOC106560948 coding upstream 190598 64600914 ~ 64602076 (-)
mespbb LOC106561116 coding upstream 208233 64618549 ~ 64619983 (-)
G171357 NA non-coding downstream 17025 64388158 ~ 64389035 (-)
G171378 NA non-coding downstream 24258 64379007 ~ 64381802 (-)
G171279 NA non-coding downstream 183393 64221374 ~ 64222667 (-)
G171265 NA non-coding downstream 203841 64201912 ~ 64202219 (-)
G171136 LOC106560972 non-coding downstream 320509 64084388 ~ 64085551 (-)
G171416 NA non-coding upstream 60280 64470596 ~ 64471072 (-)
G171420 NA non-coding upstream 118159 64528475 ~ 64528793 (-)
G171458 NA non-coding upstream 144857 64555173 ~ 64555423 (-)
G171459 NA non-coding upstream 147307 64557623 ~ 64557888 (-)
LOC110493507 LOC106560984 other downstream 1255209 63146769 ~ 63224837 (-)
G168141 NA other downstream 2890404 61515237 ~ 61515656 (-)
G168078 NA other downstream 2914389 61490434 ~ 61491671 (-)
G172141 NA other upstream 675256 65085572 ~ 65086188 (-)
G173121 NA other upstream 973121 65383437 ~ 65383873 (-)
zcchc14 zcchc14 other upstream 1124155 65530911 ~ 65571025 (-)
G173370 LOC106560927 other upstream 1423025 65833341 ~ 65839074 (-)
G173431 NA other upstream 1511534 65921850 ~ 65922229 (-)

Expression


Co-expression Network