LOC110501781 (LOC106560965)


Basic Information

Item Value
gene id LOC110501781
gene name LOC106560965
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64428834 ~ 64445900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952930.1
ACACCTTAATTTTCTTCATTGTTGGTATTGTGGTAGCCAGAGCATTTCAACACGTGGGCGTCAACGATTTTTTCAACATTGTAGTGCTCTACTTTGCTATGTACATCATAAGACTTGTGACTGTTATTGCACTGTCACCCTTCCTGGTACGCACTGGCTATGGCTTCAGCTGGCGGTGGGCAGCAGTCTGTGTCTGGGGCGGGACCAAGGGGGCCTTTTGTCTAAGTCTTACACTCATGGCTTTTCAGTCAGACGATTTAGATGAAGAGCAAGTGAGAGAAAAGATTTTGGTCCTGTCTTCTGGAATGGTGGTCCTAACACTTCTTATCAATGCATCATCGATGACTTGGTTCCTTAGACTATTAGGCCTGTATGATGTGTCTGTGCCCAGGCGCATGGCCATGTATAGTGCGGTGCAGCGGGTGCGGGAGAGCTCGCAGAACACTTTCAGTTTGTTGAAGATTGACAGGTTTTTAGCAGATGCTAACTGGGAAATGGCAGAGCAGAGAGTCCTCATAGAGGACCCCTATAAAACACCCAATGAAAAGGTTAGCATTGAAGAGTTCTCTCCCACAGCCAGGATGACTAAGTGCCCAGACTGTGACAGGGACATTCCCTATGCACCATCACCACAGGAGCTGGAGGACATGATGGAGGAGGCTCGCATGCGCATCCTGAAGGCTCAGAAGACAAGCTACTGGAAGCAGTACAGCGCTGGAATGCTGAACCGAGAGGCAGCCAGGACCCTGATCAATACAGCTGAGAACATGACAGACCACAAGGGAAAGTTCATGAGTGTTCAGGATGTCAAGAAATACTGGGAGCTGAAAGGGTTTTTTGTGTCTCTTCGGAGGAGTCTAGAGGACTGGCTGTACAATGTCAAGCTTGATAAACTTAAACCATCAAGGAATGCGATGCTCAAGCGGTGCTACCAGGTTGTCTTCAGCCTCCCCTTTGAGTATTTCATCTACGCATTGATTGTCCTCAACATCTTCCCCATCATCCTGGAGTTCATCCCAGCGATCAGTGACAAACATAACCTAGAACTCAGTATTATCAACTACATTTTCTTCAGCGGCTATCTTGTGGAGGCTATACTGAAGgcTTTGGCCATGAGGAAGGCCTATATCTTCAATCACTGGAACCAGTTTGACCTCTTCATTATCGTCTTGGCTTGTGTTGACATATTCCTGGACCATTATTTAGAAACCACAGCATATGTTGTCAATATTCACATGATAAAAATTGTGAAGGTGTCTAAAATGATCCGCCTTACCAGGGCACTTCGTTTGGTGAAGATCATCATTCCCAAGCTCATAGAAATCATAAACCGGCAGATCCATAAGCAGCTCAGCTTTGGGTATGACATCGGGAAAGGCTATGTCATCGGAGAGGAGCACATAAGCAAGATCATTGACCATATCTCTGATGACAAAAGCATATCTAAGAAATTGAAAATAATACTGGAGAGAAACTGCCAGCAGGCTGTCAGGGAGATTGGCTTGCTGCAGAGAGACCATCCTGAGATTGCCATCTCGGTGAAGACCAGACAGGCCATACGAGCCGTGCTGAACAGTGAGAGAGACGCCATCCATACACTCGTGTCCGGGGGGCTCTTAGATGACATAGAAGCATCAAAGCTGGAGAAGATGATTGAAATAAAAATGAAGAAATTGATCAAATTTCCACCAACAATCCCAGCAGCAACAGCAGAGGAGCTTCTGCAGAATTTGCCTTGGCTGAACAAAGACAGCACCCAGATTCAGTTCATCAAGACAGTGGCCAAGCTTCTTTTCTTTGACTTTGGAGACACCATCATACAAGAAAATGATGACCCTCAAGGAATACACTTGATTGTCTCTGGCCTGGTTAAGATGACTGGAGGAAGCCCAAACCTTGGAGGCAAGAGGCCCAAGGAGAAGACCAGGCTGACAGACTACAGGAGCTGCGGGGCCATCATGGGAGAACTCAACTGTCTCACCCAGCAGTCTATGGAGATGACGGTCACCTGTGAGACAGCCACTCAGACCTGCTTCATTGCTATTGAATCCCTGTTTGAGGCGTTTGATGTTTTCCCCGAGTTCCCGTCTCTGGAGTATATGATCTGGCGCTCCCTGGCCGTGAAAATCAGCACCAGCACCTTCATGGAGCACATTATCTATCAGGGCTGGAGTTACCACAGGATTTGTTCTCATCTGGCCCGGGCCTATCTGGTAGACGTGGAGGTGAACAGGAAGTTTGACGTGTACGACGGCACCATGGAGGACGTGGTGGTGATCTATGGGAGTTGTGATGACCTCGCGTCCCAGTGCTCCTACAACGCCCCAGCTCTCATCAGCAGGACTACTCACCAGGTACTGGGCACAGCAAACACCACCAAACTGTTGATCGTGCCAAGTGAGCATTCTGAAATGAAGCAGACCGTCTCAGAGCTTCCAAGACAGGACAGTGTTCCCTGTCTGAGACATGCAGCTCATAGGAGAGCATCTAGAGATGATCGATCAGGGCTGCTGAGAACAGTAAGTGTGACGTCTAAGGAGGGTTCTCCAAAGAGAAGTTGTTCATCACTTGACAAGGCCACGTGATGATAGGGTATGACTGTGCAACTGCTGGCCATACAGGCCCAGACACAACCTGCCAGGCAACCTGAATCTGTAAAACTTATATAAGCAAAATATTTGTTTTCAAATGTATCATACTGATTTAATATTAAACATATTTATTT

Function

NR:

description
PREDICTED: sodium/hydrogen exchanger 10-like

GO: NA

KEGG:

id description
K14726 SLC9A10_11; solute carrier family 9 (sodium/hydrogen exchanger), member 10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952930.1 True 2725 mRNA 0.47 20 64428834 64445900

Neighbor

gene id symbol gene type direction distance location
LOC118936791 LOC106560965 coding upstream 112 64427891 ~ 64428722 (+)
LOC110493690 NA coding upstream 22430 64404119 ~ 64406404 (+)
LOC110493669 LOC106560968 coding upstream 49471 64250758 ~ 64379363 (+)
LOC110493658 LOC106560970 coding upstream 248631 64169264 ~ 64180203 (+)
nell2a LOC106560972 coding upstream 336646 63989427 ~ 64092188 (+)
anpepb LOC106560949 coding downstream 124955 64570855 ~ 64598616 (+)
akap13 LOC106560961 coding downstream 220235 64666135 ~ 64759393 (+)
LOC110493825 LOC106560959 coding downstream 420384 64866284 ~ 65024865 (+)
map1lc3b map1lc3b coding downstream 1085226 65531126 ~ 65536787 (+)
jph3 jph3 coding downstream 1147568 65593468 ~ 65648660 (+)
G170961 LOC106560967 non-coding upstream 25418 64402476 ~ 64403416 (+)
G170953 NA non-coding upstream 33793 64391140 ~ 64395041 (+)
G170865 NA non-coding upstream 47659 64379995 ~ 64381175 (+)
G170751 NA non-coding upstream 284713 64066489 ~ 64144121 (+)
G170981 NA non-coding downstream 5528 64451428 ~ 64455336 (+)
G170992 NA non-coding downstream 29402 64475302 ~ 64475998 (+)
G171032 NA non-coding downstream 83200 64529100 ~ 64552688 (+)
G171472 NA non-coding downstream 120728 64566628 ~ 64567245 (+)
G171483 NA non-coding downstream 154462 64600362 ~ 64600578 (+)
G170150 LOC106560975 other upstream 550601 63873248 ~ 63878233 (+)
G170131 NA other upstream 598514 63820461 ~ 63830320 (+)
G169130 NA other upstream 1643191 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 2548410 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 2701380 61726959 ~ 61727454 (+)
G172639 NA other downstream 1489696 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 1816726 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 2295920 66741820 ~ 66742213 (+)

Expression


Co-expression Network