mespab (LOC106560948)


Basic Information

Item Value
gene id mespab
gene name LOC106560948
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64600914 ~ 64602076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579621.2
ATGGTGTTTCCCAGGAACTCCGCTGGAGAGCATCTGATGGACAGTAATGGCTTTCTGAAGCCGAGCTGTCCCAGCTCCGACCCTGGTTATTACAGTGCCTGTAGTAGCCTgtcacctgcctcctccattgactccttctgcctctctcccccttgtttaCAGTGGGGAGGTGGTCAGGAGAAGGAAGATTCTGACGCTTCCGGCTGCATCAGCCATGTTGCCAAAAGAAAGAGGATAGAAAAACTCCCAGCTCAGGAGAAGAGGTCTAGGTCCAAGTTCCCTGGGAAGAAGCGGGAGAGCGCCAGCGAGAGGGAGAAGCTGAGGATGAGAGACCTGACAAAAGCCCTCAACCACCTCAGGACCTACCTGCCCCCCTCTGTGGCTCCGGCTGGACAGACTCTGACCAAGATCGAGACCCTGCGCCTCACCATCAGGTACATCTCCCACCTCTCAGCCCAGCTAGAGCTCAGCGAGAAGGAGACATGCCTGAAAAGAGAGATGGAAACCACACCACGCCAGTATATTCCACAATGCCCTCAGGGAAGCTCCATGTCTGGACAATGGTAtcaggagagactacaggggaACATCCAGAGCAATGATCAATACTGTCTGCCACTGGTCACATCATGTACCAACAACACAGAACCACAACCAAACTACCTGACGTCAGCGGTCTCCTATCAGGACATGATCTTATATCCGatgcacaaccaGGTGTTACAAAGTGACGTCAAGTCATTTGATATGGCCTACTACCAATAA

Function

NR:

description
mesoderm posterior protein 2-like

GO: NA

KEGG:

id description
K09076 MESP; mesoderm posterior

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579621.2 True 765 mRNA 0.53 3 64600914 64602076

Neighbor

gene id symbol gene type direction distance location
wu:fa25f02 LOC106560963 coding downstream 60523 64529074 ~ 64540391 (-)
lrp5 LOC106560964 coding downstream 74533 64475302 ~ 64526381 (-)
ppp6r3 NA coding downstream 131081 64451302 ~ 64469833 (-)
LOC110493697 LOC106561117 coding downstream 190598 64406060 ~ 64410316 (-)
tesmin LOC106560967 coding downstream 200436 64390151 ~ 64400478 (-)
mespbb LOC106561116 coding upstream 16473 64618549 ~ 64619983 (-)
sv2bb LOC100380683 coding upstream 20295 64622371 ~ 64662514 (-)
LOC118937287 NA coding upstream 175682 64777758 ~ 64779039 (-)
LOC110493816 LOC106560960 coding upstream 200801 64802877 ~ 64848068 (-)
ntrk3a LOC106560958 coding upstream 509198 65111274 ~ 65365999 (-)
G171770 NA non-coding downstream 18096 64570912 ~ 64582818 (-)
G171775 LOC106560949 non-coding downstream 22049 64575414 ~ 64578865 (-)
G171772 LOC106560949 non-coding downstream 27817 64572400 ~ 64573097 (-)
G171771 LOC106560949 non-coding downstream 28570 64571758 ~ 64572344 (-)
G171768 NA non-coding downstream 33702 64566965 ~ 64567212 (-)
G171827 NA non-coding upstream 55505 64657581 ~ 64721165 (-)
G171898 NA non-coding upstream 161217 64763293 ~ 64763622 (-)
G171907 NA non-coding upstream 173215 64775291 ~ 64775536 (-)
G172118 NA non-coding upstream 466518 65068594 ~ 65068887 (-)
G172119 NA non-coding upstream 467338 65069414 ~ 65069794 (-)
tmem117 LOC106573612 other downstream 432516 64102056 ~ 64170220 (-)
LOC110501772 LOC106560973 other downstream 637093 63958607 ~ 63963969 (-)
LOC110493507 LOC106560984 other downstream 1450063 63146769 ~ 63224837 (-)
G168141 NA other downstream 3085258 61515237 ~ 61515656 (-)
G168078 NA other downstream 3109243 61490434 ~ 61491671 (-)
G172141 NA other upstream 483496 65085572 ~ 65086188 (-)
G173121 NA other upstream 781361 65383437 ~ 65383873 (-)
zcchc14 zcchc14 other upstream 932395 65530911 ~ 65571025 (-)
G173370 LOC106560927 other upstream 1231265 65833341 ~ 65839074 (-)
G173431 NA other upstream 1319774 65921850 ~ 65922229 (-)

Expression


Co-expression Network