mespbb (LOC106561116)


Basic Information

Item Value
gene id mespbb
gene name LOC106561116
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64618549 ~ 64619983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934634.1
TTCAGTCCTACCGCTCAACACGcaggacaggacacagacagacagcatggatATGTCTGCCCCTCTTCTCAGCAACTATGGTGTTGGTGTTCAGTACCACTGGAGTTATCCCAGTTCGGACTCTGAGTTTTATAACGTCTCCTCTCCAGAGACCTGCATCCTCTCCCCTTCTGCCTACATGGACTTCTCATCCTCCTGCCTGCCTCGGGGGACCGCCACAGAACCTCACAGGTCCACACACTCTGGAGGAGCCAAGGCGTCCGCTTCCCCATCCTCCAGTGACGAGGGAGGACACTCCGGAGGGAGGATTAGAAAGAACCGCTCCAAGAACCCCAGCAAGCAGAGACAGAGTGCCAGCGAGAAGGAGAAGCTGAGGATGAGAGACCTGACCAAAGCCCTCAACCACCTCAGGACCTACCTGCCCCCGTCTGTGGCTCCGGCTGGACAGACTCTGACCAAGATCGAGACGCTGCGCCTCACCATCGGCTACATCTCCCACCTGTCGGCCCAGCTAGAGCTCAGCGAGGAGGctgtgtgtcagaggaaggagcTGAACCTCCCTGTGTCAGGACACCACGTATCGCCTCAACAAGACTCTGTGGGCCTGTGCCAGTTCAACACCTCCTCCTCAGGGTACTGCTGGGCTACGCCCACGTACCCGCTCCACAACACTGGGATGGAGAGGCACCCACTCAGCAGTGAGATGGACACGTGTGCTTACGACAACAGCTTCAACTCCAGTATGGATTCGCTGTTGGAATCGCCAGAGTATGCAGAGGCTGCACAGTCATGTCAGGTATGTACAGATTCAATGTACAGTATTTAGATGTTCAAATATTTTTCCATTTATATGGTCAATGACAAGTTTTATTGCTGTTAATTTTGTTTACTCACAATAATTGGTATCACTCATTGCAATTTTTCAGTTTGATGGTTTTAAGGAAATTAGAAAATCTGTTtgaaccagtaaacaaaatattttttttctccttcagATATACAGAAAAGATGTCCACTATCAGAACATTCCTCAAGACTTCTGGATGTAACAGACGTCCTCATCAAGAGaatctactgtccagtcatagaCGTTTACTTTGATCTACAGAGTATTTATATGTTAATATAACTAATTTCTATTATTTCCAAATTCTAGATTTTACACAACgttcattgtaaatacaaaactTTTTTTAAGTGTATAATAAAATATGAACTAATAACTAACTAATGTGTCTTTGGCTATTCCTGTATTTAAAAGTAAGAGTTTTGTAAGTAAATTAGCAAGTTTGTAAGTAAAGAAGCATTTTAAGTTGTAAGTAACAGTATTGAAATGTTATTAATATATTAATGGAATATTCTGTACTTTTAAGAGaatcta

Function

NR:

description
mesoderm posterior protein 1-like

GO: NA

KEGG:

id description
K09076 MESP; mesoderm posterior

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934634.1 True 1381 mRNA 0.44 2 64618549 64619983

Neighbor

gene id symbol gene type direction distance location
mespab LOC106560948 coding downstream 16473 64600914 ~ 64602076 (-)
wu:fa25f02 LOC106560963 coding downstream 78158 64529074 ~ 64540391 (-)
lrp5 LOC106560964 coding downstream 92168 64475302 ~ 64526381 (-)
ppp6r3 NA coding downstream 148716 64451302 ~ 64469833 (-)
LOC110493697 LOC106561117 coding downstream 208233 64406060 ~ 64410316 (-)
sv2bb LOC100380683 coding upstream 2388 64622371 ~ 64662514 (-)
LOC118937287 NA coding upstream 157775 64777758 ~ 64779039 (-)
LOC110493816 LOC106560960 coding upstream 182894 64802877 ~ 64848068 (-)
ntrk3a LOC106560958 coding upstream 491291 65111274 ~ 65365999 (-)
det1 LOC106560940 coding upstream 867404 65487387 ~ 65509066 (-)
G171770 NA non-coding downstream 35731 64570912 ~ 64582818 (-)
G171775 LOC106560949 non-coding downstream 39684 64575414 ~ 64578865 (-)
G171772 LOC106560949 non-coding downstream 45452 64572400 ~ 64573097 (-)
G171771 LOC106560949 non-coding downstream 46205 64571758 ~ 64572344 (-)
G171768 NA non-coding downstream 51337 64566965 ~ 64567212 (-)
G171827 NA non-coding upstream 37598 64657581 ~ 64721165 (-)
G171898 NA non-coding upstream 143310 64763293 ~ 64763622 (-)
G171907 NA non-coding upstream 155308 64775291 ~ 64775536 (-)
G172118 NA non-coding upstream 448611 65068594 ~ 65068887 (-)
G172119 NA non-coding upstream 449431 65069414 ~ 65069794 (-)
tmem117 LOC106573612 other downstream 450151 64102056 ~ 64170220 (-)
LOC110501772 LOC106560973 other downstream 654728 63958607 ~ 63963969 (-)
LOC110493507 LOC106560984 other downstream 1467698 63146769 ~ 63224837 (-)
G168141 NA other downstream 3102893 61515237 ~ 61515656 (-)
G168078 NA other downstream 3126878 61490434 ~ 61491671 (-)
G172141 NA other upstream 465589 65085572 ~ 65086188 (-)
G173121 NA other upstream 763454 65383437 ~ 65383873 (-)
zcchc14 zcchc14 other upstream 914488 65530911 ~ 65571025 (-)
G173370 LOC106560927 other upstream 1213358 65833341 ~ 65839074 (-)
G173431 NA other upstream 1301867 65921850 ~ 65922229 (-)

Expression


Co-expression Network