LOC110493816 (LOC106560960)


Basic Information

Item Value
gene id LOC110493816
gene name LOC106560960
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64802877 ~ 64848068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568319.2
CACGTCAATCACTTGCAAGCGAGACCACTGAATATGAATTTTTCTGATTTCCCACCTCAGACAGAACTCAGCTGCAGACAAAGTGGCTTGAAAGGACCTCAACTACTAGAGTGAAATTTAAATAATGGCTTTAGCAATTGACCAGAAACTGTACACCTCTTGGGTTCCCGTCTAACAACCATATTTATACGTCACAGCAGCTCTATCAGCTCAGCCTCTAGAGGGACCACTTTTTGGGACCGATGCAGACCCCCCCTCAGATCCTCACTGTCAGTGCCTGCACCTGGGTCAGCAACTTTTGCCGGCTTGGAGAAATTGAGACGAGCGACTCCCTGGGTCTGGAGATCTCTGAAACCATGTCAGTCACCGTCCACGAGAACCGAAAGTCCCGGACCAGCACGGGCTCCATGAACATCTCTCTGTTCCATAAGCCCTCGCATCCAGACAGTGTGCTCACCCACCTCAACACCCTCCGAAAGCAATGCATGTTCACTGATGTGACACTGTGGGCGGGGGACCGCTCCTTCCCCTGCCATCGGGCCGTACTAGCTGCATGCAGTCGCTACTTTGAGGCCATGTTCAGTGGAGGCTTGAGGGAGAGCCTGGACAATGAGGTGAACTTCAGAGACAGTGTGCATCCAGAGGTGCTGGAGCTGCTGCTTGACTTTGCCTACTCATCACGCGTCATCATCAATGAGGAGAACGCAGAGTCATTACTCGAGGCGGGAGACATGCTGCAGTTCCACGACATCCGAGACGCTGCCGCAGAGTTCCTGGAGAAGAACCTGCACTCGTCCAACTGCCTGGGCATGATGCTGCTGTCCGACGCCCACCAGTGCAAACGGCTATATGAGCTCTCCTGGAGGATGTGCCTGGTGCACTTTGAGGCGGTGCGGGACACAGAGGACTTCTACGGCCTCAACAAGGACAAGCTGCTGGACCTGATCCTCAGTGACGAGCTGGAGATCGAGGATGAGCAGATCGTGTTCAACGCTGTGATGCGCTGGGTGCGATATGACCTGGATGGCCGCAGAGACTACCTCCCTGAGCTGCTGCGGGGCATCCGCCTGGCCCTGCTGCCCTCTGAGTGTCTGATCGAGGCGGTGGCCTGCGAGGAGCTGGTGATGTCAGACAAGAGGAGCCGGCAGATCGTGGAGGAGGCCATGCAGTGCAAGAAGAAAATTCTGCAGAACGATGGGGTGGTCACCAGCCCCTGTGCCCGACCCCGCAAGGCAGGCCACACACTGCTCATCCTGGGAGGACAGACCTTCATGTGTGATAAGATCTACCAGGTGGACCACAAAGCCAAGGAGATCATCCCCAAGTCTGACCTGCCCAGCCCCAGGAAGGAGTTCAGTGCCTGTGCCATCGGATGTAAGGTCTACGTGACTGGGGGGAGGGGTTCTGAGAACGGGGTGTCTAAGGATGTTTGGATCTATGACACGGTCCACGAGGAGTGGTCTAAAGGAGCACCCATGTTGATAGCACGTTTCGGCCATGGCTCTGCTGAACTGGAGAACTGCCTGTATGTGGTGGGCGGCCACACTGCCATAGCAGGTGtcttccctgcctccccctcagTCTCCCTCAAACAGGTAGAGCGGTATGACCCGCTTACAAACAAATGGACCATGATGGCGCCACTTAGAGACGGTGTTAGCAATGCAGCCGTGGTCAGCGCCAAGCTGAAGCTGTTTGTCTTTGGTGGCAccaccatccacagagacaaggCCTCCAAGGTGCAGTGCTACGACCCTCTAGGGAACCGTTGGGCCATCGCAGCAGAGTGTCCGCAGCCGTGGAGATACACGGCCGCCGCTGTTCTAGGCAGTCAGATCTTCATCATGGGTGGAGACACTGAGTTCACCGCCGCTTCTGCCTACCGCTTTGACTGTGAGACCAACCAGTGGTCTCGTGTTGGGGACATGACTTCTAAAAGAATGAGCTGCCACGCTGTGGCCTCTGGAAACAAACTGTACGTGGTGGGGGGCTACTTTGGGACGCAGCGCTGTAAGACACTAGACTGTTATGACCCCACGTCCGATAGCTGGAACAGTATAACCACAGTGCCTTACTCACTAATTCCTACTGCGTTCGTAAGCACCTGGAAACATCTACCAGCCTAGCTGCCTCTCTACAAGAATAAGGAGAGGTCTCCAGAACTGGGTGTCACATGTTTCTGACCGTAGTGACTGTCAGAGGCTTGCTAGGGCTTGCCTGCCCGCAGCACAGCGTGACGTGTGTCCATCGGGTGACGGGTGTGGCTCCGCCAGCGTCGCCCATTCCTGCTCCTCCAAACCCAccccgcccccccccctccccgttcCAGATGATCTGAATACAAGGTCCTCCAAGAGGGATGTCATCAGCTGGCTCTACTCCTTCATAGCACAAAGAGACATCCACACCATGCTTCCAAACAGTCTTATCCATGAtcatggagagcgagagagagacactttaTAGACAGACCACTGACTTGGGTTGGGTTTATTGCTCAGTATTTTTGACTGAGGCTAtttttgaaatgtgtttttcttttgagagatCCATTACTAGATCATTCCACTTCTCAACCCGGGCGAAATAGCCTCAAGGGCTGATGTGtttttgtaaatgacaattgATAAACTACAGTAAGCAGGAACACTATCCGTTCCATCATAGGTGGTGCTGTAGGCTCTCAGCACACAGGATTTATGAACTCGGCAAACGCTCATATCCAACAAATAGCCTACAGTTCAAGTCAACTTTATAAAACAATGAGATATATCAAAGAAACACAATGTATCATTGACCTTTCAAaggaaatagttgtttttttacgtggaaacaacattgaatCAACCAGTTTTTGCTCGGTTTGTTGATAATGTGTCAATGAGGGTACTAACCTTTTGATACTaagacttttttttttctctgaatTGTGTTTTATTTCTGGAGTTAGTTTGTGGGATGACAGCCGCACAGAAGCAACAACCTTTTTTCCAGCAGTCCCTGATAGGAAGGAGAACTTAACAGGAACGTTTTAATGATAAGGACTCACTTTTAAACTGCAGTTTTCCATGTGAGGGGTGCCTTCAAGGACTGTAATAAGGCCTCTTTGTGAACTGAATTCCTTGTGCCTAATACTGGTAGGAAGGTTTGTCATTTCACTCTGAAGTGTTTGAATAAATGACTTTTTGATGCA
>XM_036953084.1
CACGTCAATCACTTGCAAGCGAGACCACTGAATATGAATTTTTCTGATTTCCCACCTCAGACAGAACTCAGCTGCAGACAAAGTGGCTTGAAAGGACCTCAACTACTAGAGTGAAATTTAAATAATGGCTTTAGCAATTGACCAGAAACTGTACACCTCTTGGGTTCCCGTCTAACAACCATATTTATTTGGAGAAATTGAGACGAGCGACTCCCTGGGTCTGGAGATCTCTGAAACCATGTCAGTCACCGTCCACGAGAACCGAAAGTCCCGGACCAGCACGGGCTCCATGAACATCTCTCTGTTCCATAAGCCCTCGCATCCAGACAGTGTGCTCACCCACCTCAACACCCTCCGAAAGCAATGCATGTTCACTGATGTGACACTGTGGGCGGGGGACCGCTCCTTCCCCTGCCATCGGGCCGTACTAGCTGCATGCAGTCGCTACTTTGAGGCCATGTTCAGTGGAGGCTTGAGGGAGAGCCTGGACAATGAGGTGAACTTCAGAGACAGTGTGCATCCAGAGGTGCTGGAGCTGCTGCTTGACTTTGCCTACTCATCACGCGTCATCATCAATGAGGAGAACGCAGAGTCATTACTCGAGGCGGGAGACATGCTGCAGTTCCACGACATCCGAGACGCTGCCGCAGAGTTCCTGGAGAAGAACCTGCACTCGTCCAACTGCCTGGGCATGATGCTGCTGTCCGACGCCCACCAGTGCAAACGGCTATATGAGCTCTCCTGGAGGATGTGCCTGGTGCACTTTGAGGCGGTGCGGGACACAGAGGACTTCTACGGCCTCAACAAGGACAAGCTGCTGGACCTGATCCTCAGTGACGAGCTGGAGATCGAGGATGAGCAGATCGTGTTCAACGCTGTGATGCGCTGGGTGCGATATGACCTGGATGGCCGCAGAGACTACCTCCCTGAGCTGCTGCGGGGCATCCGCCTGGCCCTGCTGCCCTCTGAGTGTCTGATCGAGGCGGTGGCCTGCGAGGAGCTGGTGATGTCAGACAAGAGGAGCCGGCAGATCGTGGAGGAGGCCATGCAGTGCAAGAAGAAAATTCTGCAGAACGATGGGGTGGTCACCAGCCCCTGTGCCCGACCCCGCAAGGCAGGCCACACACTGCTCATCCTGGGAGGACAGACCTTCATGTGTGATAAGATCTACCAGGTGGACCACAAAGCCAAGGAGATCATCCCCAAGTCTGACCTGCCCAGCCCCAGGAAGGAGTTCAGTGCCTGTGCCATCGGATGTAAGGTCTACGTGACTGGGGGGAGGGGTTCTGAGAACGGGGTGTCTAAGGATGTTTGGATCTATGACACGGTCCACGAGGAGTGGTCTAAAGGAGCACCCATGTTGATAGCACGTTTCGGCCATGGCTCTGCTGAACTGGAGAACTGCCTGTATGTGGTGGGCGGCCACACTGCCATAGCAGGTGtcttccctgcctccccctcagTCTCCCTCAAACAGGTAGAGCGGTATGACCCGCTTACAAACAAATGGACCATGATGGCGCCACTTAGAGACGGTGTTAGCAATGCAGCCGTGGTCAGCGCCAAGCTGAAGCTGTTTGTCTTTGGTGGCAccaccatccacagagacaaggCCTCCAAGGTGCAGTGCTACGACCCTCTAGGGAACCGTTGGGCCATCGCAGCAGAGTGTCCGCAGCCGTGGAGATACACGGCCGCCGCTGTTCTAGGCAGTCAGATCTTCATCATGGGTGGAGACACTGAGTTCACCGCCGCTTCTGCCTACCGCTTTGACTGTGAGACCAACCAGTGGTCTCGTGTTGGGGACATGACTTCTAAAAGAATGAGCTGCCACGCTGTGGCCTCTGGAAACAAACTGTACGTGGTGGGGGGCTACTTTGGGACGCAGCGCTGTAAGACACTAGACTGTTATGACCCCACGTCCGATAGCTGGAACAGTATAACCACAGTGCCTTACTCACTAATTCCTACTGCGTTCGTAAGCACCTGGAAACATCTACCAGCCTAGCTGCCTCTCTACAAGAATAAGGAGAGGTCTCCAGAACTGGGTGTCACATGTTTCTGACCGTAGTGACTGTCAGAGGCTTGCTAGGGCTTGCCTGCCCGCAGCACAGCGTGACGTGTGTCCATCGGGTGACGGGTGTGGCTCCGCCAGCGTCGCCCATTCCTGCTCCTCCAAACCCAccccgcccccccccctccccgttcCAGATGATCTGAATACAAGGTCCTCCAAGAGGGATGTCATCAGCTGGCTCTACTCCTTCATAGCACAAAGAGACATCCACACCATGCTTCCAAACAGTCTTATCCATGAtcatggagagcgagagagagacactttaTAGACAGACCACTGACTTGGGTTGGGTTTATTGCTCAGTATTTTTGACTGAGGCTAtttttgaaatgtgtttttcttttgagagatCCATTACTAGATCATTCCACTTCTCAACCCGGGCGAAATAGCCTCAAGGGCTGATGTGtttttgtaaatgacaattgATAAACTACAGTAAGCAGGAACACTATCCGTTCCATCATAGGTGGTGCTGTAGGCTCTCAGCACACAGGATTTATGAACTCGGCAAACGCTCATATCCAACAAATAGCCTACAGTTCAAGTCAACTTTATAAAACAATGAGATATATCAAAGAAACACAATGTATCATTGACCTTTCAAaggaaatagttgtttttttacgtggaaacaacattgaatCAACCAGTTTTTGCTCGGTTTGTTGATAATGTGTCAATGAGGGTACTAACCTTTTGATACTaagacttttttttttctctgaatTGTGTTTTATTTCTGGAGTTAGTTTGTGGGATGACAGCCGCACAGAAGCAACAACCTTTTTTCCAGCAGTCCCTGATAGGAAGGAGAACTTAACAGGAACGTTTTAATGATAAGGACTCACTTTTAAACTGCAGTTTTCCATGTGAGGGGTGCCTTCAAGGACTGTAATAAGGCCTCTTTGTGAACTGAATTCCTTGTGCCTAATACTGGTAGGAAGGTTTGTCATTTCACTCTGAAGTGTTTGAATAAATGACTTTTTGATGCA

Function

NR:

description
kelch-like protein 25 isoform X1

GO: NA

KEGG:

id description
K10462 KLHL25_37, ENC1, ENC2; kelch-like protein 25/37 (ectoderm-neural cortex protein)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568319.2 False 3193 mRNA 0.52 4 64802877 64848068
XM_036953084.1 True 3075 mRNA 0.51 3 64802877 64848068

Neighbor

gene id symbol gene type direction distance location
LOC118937287 NA coding downstream 23838 64777758 ~ 64779039 (-)
sv2bb LOC100380683 coding downstream 140363 64622371 ~ 64662514 (-)
mespbb LOC106561116 coding downstream 182894 64618549 ~ 64619983 (-)
mespab LOC106560948 coding downstream 200801 64600914 ~ 64602076 (-)
wu:fa25f02 LOC106560963 coding downstream 262486 64529074 ~ 64540391 (-)
ntrk3a LOC106560958 coding upstream 263206 65111274 ~ 65365999 (-)
det1 LOC106560940 coding upstream 639319 65487387 ~ 65509066 (-)
zcchc14 zcchc14 coding upstream 687211 65530911 ~ 65571025 (-)
klhdc4 klhdc4 coding upstream 803011 65651079 ~ 65665571 (-)
slc7a5 slc7a5 coding upstream 837193 65685261 ~ 65715957 (-)
G171907 NA non-coding downstream 27341 64775291 ~ 64775536 (-)
G171898 NA non-coding downstream 39255 64763293 ~ 64763622 (-)
G171827 NA non-coding downstream 81712 64657581 ~ 64721165 (-)
G171775 LOC106560949 non-coding downstream 224012 64575414 ~ 64578865 (-)
G171772 LOC106560949 non-coding downstream 229780 64572400 ~ 64573097 (-)
G172118 NA non-coding upstream 220526 65068594 ~ 65068887 (-)
G172119 NA non-coding upstream 221346 65069414 ~ 65069794 (-)
G172129 NA non-coding upstream 228221 65076289 ~ 65076554 (-)
G172929 NA non-coding upstream 245450 65093518 ~ 65093759 (-)
G172937 NA non-coding upstream 256472 65104540 ~ 65105721 (-)
tmem117 LOC106573612 other downstream 634479 64102056 ~ 64170220 (-)
LOC110501772 LOC106560973 other downstream 839056 63958607 ~ 63963969 (-)
LOC110493507 LOC106560984 other downstream 1652026 63146769 ~ 63224837 (-)
G168141 NA other downstream 3287221 61515237 ~ 61515656 (-)
G168078 NA other downstream 3311206 61490434 ~ 61491671 (-)
G172141 NA other upstream 237504 65085572 ~ 65086188 (-)
G173121 NA other upstream 535369 65383437 ~ 65383873 (-)
G173370 LOC106560927 other upstream 985273 65833341 ~ 65839074 (-)
G173431 NA other upstream 1073782 65921850 ~ 65922229 (-)

Expression


Co-expression Network