XLOC_020670 (srsf3b)


Basic Information

Item Value
gene id XLOC_020670
gene name srsf3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 613265 ~ 622967 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040872
GGGAAATTTACAAACGAAATCATATCAACTTACTGTGCTGTTTTCTGATTCATccagtttgctctgatctgacgCTTGAGTGACAATAAACCCACCATCAGCAGTACCAGTGGCCTGTCTCATAATTGTACACAACGCAGAGAGTGCGAACACCGGTTacaGTTTTCTCTCGCACTaataaatgtgcataaactgAAGCCCCGCCTACTCTGCGTCCATCATGACGTAATACACGTCAGTACGTCCGCGTTTCCGCGCTGCGCCATTTCGGAGCAGACCCGTGCCAggaatcaaacacacacacacggccagAAATACGCGATAATTACGATTGAACCATGCATCGCGACTGCCCCCTGGACTGCAAGGTTTACGTTGGGAATCTGGGGAATAATGGGAATAAGTCTGAGCTGGAGAGGGCGTTTGGCTACTACGGACCTCTGAGGAGCGTCTGGGTGGCCAGAAACCCTCCTGGTTTTGCGTTTGTTGAGTTTGAAGACCCTCGTGATGCCACAGACGCCGTCAGAGAGCTGGACGGGCGGACCCTCTGTGGTTGCCGAGTGAGGGTTGAATTGTCCAATGGCGAGAAGCGGACTCGTAGCCGGGGTCCACCTCCTTCTTGGAACCGCCGCCCACGGGATGACTACCGCCGCCGCAGCAGCCCGCCCCAGAGGCGCAGATCTCCCAGGAGGAGGAGCTTCAGTCGTAGTCGCAGCAGATCTTTCTCCAGAGAACGCAGAAGGGAGCGATCTCTGTCCCGCGAGAGGAACCACAAACCATCACGATCTTTCTCCCGGTCGAGGAGTCGTTCCAGATCTAATGACCGGAAATGAGCGTCGATGTTTGTGACTGAAACCTTGATCAAACATGTTGGAGAACTTTGGAGAGACAGTTTATTGCCCGtgtaaattttgtttttttattatctttattttagCAGTTCTTTCACCTTCAGTAGCTGCGGTTATGAGTGTTTTATGTGATGGCATCTCACCTTTTTTTAAGACtcgttttatttgtatttctgaTGACGATTGTGATTGGTCCTGCTGCACTGCGCGCGAGTGTTTGGTTTATTTGTGCGATCAGAAGCAAAGCGATGGAATGGCAACATCATGGCAGTAGCGCGAGGAATCAAGGACGGCTTTCgttcttatgtttattttatttcccttGTAGTGTTTGTAAGGTTTATATTGTGGAtctgaaataaaacccattaaaaAATC
>TCONS_00040873
AGACCGCATTGAGCGCGCTGAGGAGAGGTGGGGAAATTTACAAACGAAATCATATCAACTTACTGTGCTGTTTTCTGATTCATccaATTGAACCATGCATCGCGACTGCCCCCTGGACTGCAAGGTTTACGTTGGGAATCTGGGGAATAATGGGAATAAGTCTGAGCTGGAGAGGGCGTTTGGCTACTACGGACCTCTGAGGAGCGTCTGGGTGGCCAGAAACCCTCCTGGTTTTGCGTTTGTTGAGTTTGAAGACCCTCGTGATGCCACAGACGCCGTCAGAGAGCTGGACGGGCGGACCCTCTGTGGTTGCCGAGTGAGGGTTGAATTGTCCAATGGCGAGAAGCGGACTCGTAGCCGGGGTCCACCTCCTTCTTGGAACCGCCGCCCACGGGATGACTACCGCCGCCGCAGCAGCCCGCCCCAGAGGCGCAGATCTCCCAGGAGGAGGAGCTTCAGTCGTAGTCGCAGCAGATCTTTCTCCAGAGAACGCAGAAGGGAGCGATCTCTGTCCCGCGAGAGGAACCACAAACCATCACGATCTTTCTCCCGGTCGAGGAGTCGTTCCAGATCTAATGACCGGAAATGAGCGTCGATGTTTGTGACTGAAACCTTGATCAAACATGTTGGAGAACTTTGGAGAGACAGTTTATTGCCCGtgtaaattttgtttttttattatctttattttagCAGTTCTTTCACCTTCAGTAGCTGCGGTTATGAGTGTTTTATGTGATGGCATCTCACCTTTTTTTAAGACtcgttttatttgtatttctgaTGACGATTGTGATTGGTCCTGCTGCACTGCGCGCGAGTGTTTGGTTTATTTGTGCGATCAGAAGCAAAGCGATGGAATGGCAACATCATGGCAGTAGCGCGAGGAATCAAGGACGGCTTTCgttcttatgtttattttatttcccttGTAGTGTTTGTAAGGTTTATATTGTGGAtctgaaataaaacccattaaaaAATC
>TCONS_00040874
TTAATGCGATGTCTTGTTTCGCGCAGATTGAACCATGCATCGCGACTGCCCCCTGGACTGCAAGGTTTACGTTGGGAATCTGGGGAATAATGGGAATAAGTCTGAGCTGGAGAGGGCGTTTGGCTACTACGGACCTCTGAGGAGCGTCTGGGTGGCCAGAAACCCTCCTGGTTTTGCGTTTGTTGAGTTTGAAGACCCTCGTGATGCCACAGACGCCGTCAGAGAGCTGGACGGGCGGACCCTCTGTGGTTGCCGAGTGAGGGTTGAATTGTCCAATGGCGAGAAGCGGACTCGTAGCCGGGGTCCACCTCCTTCTTGGAACCGCCGCCCACGGGATGACTACCGCCGCCGCAGCAGCCCGCCCCAGAGGCGCAGATCTCCCAGGAGGAGGAGCTTCAGTCGTAGTCGCAGCAGATCTTTCTCCAGAGAACGCAGAAGGGAGCGATCTCTGTCCCGCGAGAGGAACCACAAACCATCACGATCTTTCTCCCGGTCGAGGAGTCGTTCCAGATCTAATGACCGGAAATGAGCGTCGATGTTTGTGACTGAAACCTTGATCAAACATGTTGGAGAACTTTGGAGAGACAGTTTATTGCCCGtgtaaattttgtttttttattatctttattttagCAGTTCTTTCACCTTCAGTAGCTGCGGTTATGAGTGTTTTATGTGATGGCATCTCACCTTTTTTTAAGACtcgttttatttgtatttctgaTGACGATTGTGATTGGTCCTGCTGCACTGCGCGCGAGTGTTTGGTTTATTTGTGCGATCAGAAGCAAAGCGATGGAATGGCAACATCATGGCAGTAGCGCGAGGAATCAAGGACGGCTTTCgttcttatgtttattttatttcccttGTAGTGTTTGTAAGGTTTATATTGTGGAtctgaaataaaacccatt
>TCONS_00040875
GTTTCAGGTTTTCTCTCGCACTaataaatgtgcataaactgAAGCCCCGCCTACTCTGCGTCCATCATGACGTAATACACGTCAGTACGTCCGCGTTTCCGCGCTGCGCCATTTCGGAGCAGACCCGTGCCAggaatcaaacacacacacacggccagAAATACGCGATAATTACGATTGAACCATGCATCGCGACTGCCCCCTGGACTGCAAGGTTTACGTTGGGAATCTGGGGAATAATGGGAATAAGTCTGAGCTGGAGAGGGCGTTTGGCTACTACGGACCTCTGAGGAGCGTCTGGGTGGCCAGAAACCCTCCTGGTTTTGCGTTTGTTGAGTTTGAAGACCCTCGTGATGCCACAGACGCCGTCAGAGAGCTGGACGGGCGGACCCTCTGTGGTTGCCGAGTGAGGGTTGAATTGTCCAATGGCGAGAAGCGGACTCGTAGCCGGGGTCCACCTCCTTCTTGGAACCGCCGCCCACGGGATGACTACCGCCGCCGCAGCAGCCCGCCCCAGAGGCGCAGATCTCCCAGGAGGAGGAGCTTCAGTCGTAGTCGCAGCAGATCTTTCTCCAGAGAACGCAGAAGGGAGCGATCTCTGTCCCGCGAGAGGAACCACAAACCATCACGATCTTTCTCCCGGTCGAGGAGTCGTTCCAGATCTAATGACCGGAAATGAGCGTCGATGTTTGTGACTGAAACCTTGATCAAACATGTTGGAGAACTTTGGAGAGACAGTTTATTGCCCGtgtaaattttgtttttttattatctttattttagCAGTTCTTTCACCTTCAGTAGCTGCGGTTATGAGTGTTTTATGTGATGGCATCTCACCTTTTTTTAAGACtcgttttatttgtatttctgaTGACGATTGTGATTGGTCCTGCTGCACTGCGCGCGAGTGTTTGGTTTATTTGTGCGATCAGAAGCAAAGCGATGGAATGGCAACATCATGGCAGTAGCGCGAGGAATCAAGGACGGCTTTCgttcttatgtttattttatttcccttGTAGTGTTTGTAAGGTTTATATTGTGGAtctgaaataaaacccatt
>TCONS_00040876
GCTGGTATGAGATCTTAGGCAAGCAGACTGATGGGGAGCCCAAACGGAGGTTCAGGTTACATAGGAAGCGTGGGCTTTGAGAGCTGCTCTTGCTTTCTTTCATTGTCTTCATTCTGTGGGATTGTTTGCAGTGCGTTTGTGTTGAGTTTGTCCTCTTGCTAGTGCACTACTGTGTAGACTGGAGCGTAGCGCTCTTAGCAAGGTTCTCGAGCGCTCATTGCGACTCCACCCCTGTATCAGGGCGGTGACGAGTGCGTTTGACTGTTAGCAGGCTGGAGTTTCAGGGAATTTGAGCTGCGTCTGTGTCTCGATTTGCACGTTCACTCGCTCTGCTTCTCTTCTTTCTTCAGATCTCCCAGGAGGAGGAGCTTCAGTCGTAGTCGCAGCAGATCTTTCTCCAGAGAACGCAGAAGGGAGCGATCTCTGTCCCGCGAGAGGAACCACAAACCATCACGATCTTTCTCCCGGTCGAGGAGTCGTTCCAGATCTAATGACCGGAAATGAGCGTCGATGTTTGTGACTGAAACCTTGATCAAACATGTTGGAGAACTTTGGAGAGACAGTTTATTGCCCGtgtaaattttgtttttttattatctttattttagCAGTTCTTTCACCTTCAGTAGCTGCGGTTATGAGTGTTTTATGTGATGGCATCTCACCTTTTTTTAAGACtcgttttatttgtatttctgaTGACGATTGTGATTGGTCCTGCTGCACTGCGCGCGAGTGTTTGGTTTATTTGTGCGATCAGAAGCAAAGCGATGGAATGGCAACATCATGGCAGTAGCGCGAGGAATCAAGGACGGCTTTCgttcttatgtttattttatttcccttGTAGTGTTTGTAAGGTTTATA
>TCONS_00040877
GGGAAACACaatagctcggcatataccctattgataATCTGATAATCTTTTTGAAATTCTTTAATATTGGCATGTATATGCCTGGAATTCCTGTGACTGGGTTTTCTCTCGCACTaataaatgtgcataaactgAAGCCCCGCCTACTCTGCGTCCATCATGACGTAATACACGTCAGTACGTCCGCGTTTCCGCGCTGCGCCATTTCGGAGCAGACCCGTGCCAggaatcaaacacacacacacggccagAAATACGCGATAATTACGATTGAACCATGCATCGCGACTGCCCCCTGGACTGCAAGGTTTACGTTGGGAATCTGGGGAATAATGGGAATAAGTCTGAGCTGGAGAGGGCGTTTGGCTACTACGGACCTCTGAGGAGCGTCTGGGTGGCCAGAAACCCTCCTGGTTTTGCGTTTGTTGAGTTTGAAGACCCTCGTGATGCCACAGACGCCGTCAGAGAGCTGGACGGGCGGACCCTCTGTGGTTGCCGAGTGAGGGTTGAATTGTCCAATGGCGAGAAGCGGACTCGTAGCCGGGGTCCACCTCCTTCTTGGAACCGCCGCCCACGGGATGACTACCGCCGCCGCAGCAGCCCGCCCCAGAGGCGCAGATCTCCCAGGAGGAGGAGCTTCAGTCGTAGTCGCAGCAGATCTTTCTCCAGAGAACGCAGAAGGGAGCGATCTCTGTCCCGCGAGAGGAACCACAAACCATCACGATCTTTCTCCCGGTCGAGGAGTCGTTCCAGATCTAATGACCGGAAATGAGCGTCGATGTTTGTGACTGAAACCTTGATCAAACATGTT
>TCONS_00040878
GCTGCGCCATTTCGGAGCAGACCCGTGCCAggaatcaaacacacacacacggccagAAATACGCGATAATTACGATTGAACCATGCATCGCGACTGCCCCCTGGACTGCAAGGTTTACGTTGGGAATCTGGGGAATAATGGGAATAAGTCTGAGCTGGAGAGGGCGTTTGGCTACTACGGACCTCTGAGGAGCGTCTGGGTGGCCAGAAACCCTCCTGGTTTTGCGTTTGTTGAGTTTGAAGACCCTCGTGATGCCACAGACGCCGTCAGAGAGCTGGACGGGCGGACCCTCTGTGGTTGCCGAGTGAGGGTTGAATTGTCCAATGGCGAGAAGCGGACTCGTAGCCGGGGTCCACCTCCTTCTTGGAACCGCCGCCCACGGGATGACTACCGCCGCCGCAGCAGCCCGCCCCAGAGGCGCAGAGTCACCACCATGCCTCTCCTCACCACCCTCTGAGTCAGTCTACTAGTCCTCTTTCAGCATCATGTGACCAGCGTGCCCCAATCAGCTGGCTGGGTTGGTGTCACATGACCCAGGCGTGGCCAGTCATCAGGTCGCACCAGCCCATTGGTTCCTGAGCATGCCGTTgtcagctcctcctcctccaacCTTAACACCCAATCGACAGCACTTCACATTCCTGACCAATCAGCGTTTTACGCTCCCCAATGTCGACACTGCCAACCACCAGCATCAGCCTTCGGCTAACCAATAAAAGCAGGAAAAATCCACTACATCCAGCCCCCATCCGCAAGCCAGCTAATCAGCTCGCAGCATCTGGCCTGCACTTTC
>TCONS_00040879
CGTCCGCGTTTCCGCGCTGCGCCATTTCGGAGCAGACCCGTGCCAggaatcaaacacacacacacggccagAAATACGCGATAATTACGATTGAACCATGCATCGCGACTGCCCCCTGGACTGCAAGGTTTACGTTGGGAATCTGGGGAATAATGGGAATAAGTCTGAGCTGGAGAGGGCGTTTGGCTACTACGGACCTCTGAGGAGCGTCTGGGTGGCCAGAAACCCTCCTGGTTTTGCGTTTGTTGAGTTTGAAGACCCTCGTGATGCCACAGACGCCGTCAGAGAGCTGGACGGGCGGACCCTCTGTGGTTGCCGAGTGAGGGTTGAATTGTCCAATGGCGAGAAGCGGACTCGTAGCCGGGGTCCACCTCCTTCTTGGAACCGCCGCCCACGGGATGACTACCGCCGCCGCAGCAGCCCGCCCCAGAGGCGCAGGTAAACCTGTCCTCCGCTCACCTGTCTCTCTGTAGCTTGTGTTTCAGAGCAAACTAATGTGCTTCTGCCCCGTCCGCCAGTCCTGGAGGCCACTGCTCCGCCGGTGCCACGGGTCCCGGTCCGATGAGCGTCTGCCGGACATCTTTAGCTCCTCCATCTTCATTGTCATTGATAACCATTCAATAATGATTTGACTGGGCTTCTCAAATTCGATAGACAGTCATGATTGTTTGGTGTAAAAGCGGATGAGTACTCAATTAAATGCTAATCTCATAGCAATGTACCTGGGCTACATTTCACTTCAGAATCAAAGATATTTTGGGGTAAAACTTTGCAATAAGGTTCCCTTTAATAATATTACCTTACCGCTAAAGCATTCACTAATATATTACTAAAAACAAAAGTTGtatgtaattgtttttattaagctAACACTATTTAGCAAGAAATGCTTTGTTTAAACGGTGGCTAATATTAGCATGAACCTCTACATGTCAATACTTCAGTGTTAAATGTTGGGACTT

Function

symbol description
srsf3b Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF3 (serine and arginine rich splicing factor 3).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071005-2 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF3 (serine and arginine rich splicing factor 3).

Ensembl:

ensembl_id ENSDARG00000059360

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040872 False 1229 mRNA 0.49 7 613265 622937
TCONS_00040873 False 985 mRNA 0.49 6 613265 622967
TCONS_00040874 False 917 mRNA 0.50 5 613273 619711
TCONS_00040875 False 1067 mRNA 0.50 6 613273 621711
TCONS_00040876 False 867 lncRNA 0.46 3 613298 616609
TCONS_00040877 False 811 mRNA 0.53 7 613622 621888
TCONS_00040878 False 793 mRNA 0.57 4 616769 621609
TCONS_00040879 True 962 lncRNA 0.49 3 617530 621624

Neighbor

gene id symbol gene type direction distance location
XLOC_020669 cdkn1a coding downstream 5453 603382 ~ 607812 (-)
XLOC_020668 tmcc2 coding downstream 13249 591809 ~ 600016 (-)
XLOC_020667 bysl coding downstream 55300 550828 ~ 557965 (-)
XLOC_020666 ccnd3 coding downstream 65505 537717 ~ 547760 (-)
XLOC_020665 dstyk coding downstream 106743 472327 ~ 506522 (-)
XLOC_020671 apobec2a coding upstream 18375 641342 ~ 651719 (-)
XLOC_020672 NA coding upstream 36950 659917 ~ 697504 (-)
XLOC_020673 NA coding upstream 77246 700213 ~ 704907 (-)
XLOC_020674 arl8a coding upstream 87792 710759 ~ 718615 (-)
XLOC_020675 NA coding upstream 110277 733244 ~ 735244 (-)
XLOC_020664 NA non-coding downstream 217365 392619 ~ 395900 (-)
XLOC_020657 NA non-coding downstream 297885 313710 ~ 315380 (-)
XLOC_020646 NA non-coding downstream 511818 101082 ~ 101447 (-)
XLOC_020641 NA non-coding downstream 577149 27146 ~ 36116 (-)
XLOC_020676 NA non-coding upstream 116333 739300 ~ 760886 (-)
XLOC_020684 NA non-coding upstream 395378 1018345 ~ 1023531 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G192813 NA non-coding CI01000043 null 5160068 ~ 5160451 (-)
tiger barb (Puntius tetrazona) srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 misc NC_056720.1 CM032089.1 783851 ~ 788211 (-)