LOC110493825 (LOC106560959)


Basic Information

Item Value
gene id LOC110493825
gene name LOC106560959
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64866284 ~ 65024865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953106.1
GAAACACTTAGAGGACAGACAGTAGTGAGAGGAAGGAGAGCTGACCGAGCCCCCCTTGTACACGCATCCTTTATTCCCCTTCTGGGTTAGACACAGCACAAACCATGCACCACTACAGCAAATGCAGTAACTTTACCTGGAACGGAACCCTGAAAGAGCTGGGTAACTACTCCTCCAGTGAGCGAGTACGGGCCAGCATGGCAGCCCCCGGCAGCTCCAGCGGACTAGAGGTTCTCCTGTCTACTCTGCAGAATGCAGGGGACATTGAGAGCACCCTCAATATCCTCAATGTGCTGGATGAGCTGCTTTCAGCTGgcacAGACAGACGGATCACCTACATGATCTCAAAGGGGGGCAGCGAGGCCCTCCTAAGCGCCCTGGTGACCACAGCCAGGACCTTCTCCCCCAACTTCACCATCCTCCTCCCCCTGCTGCACCTCCTGGCCAAGGTCGGACACAGAGACCGTCGTATTGGGATGAAGGCAGAGAAGGCGGAGGCTGTGCTGCCAACTCTGACTCTGCTGAAACAGAATGTAAAACACACCAGGAGGACGGCAGCCTGCCTTTGGGTCCTCCAGGTTTTCTGCTCCTCTGTCACCACAGCTACGCTGCTGGGACAAAACCGAGGCCTGGACGTTATATTCAGACTGATACCCCCTCACACTACGAGGCACAAACGCACCGTCAAGGCAGCAATCGATGCACTGGCAGCACTTTTATGTTCAAAGGCCAATGTCAGGGCCGCTGTGGCTAACGGTTACGTGTCTGCCCTGTTGAAGCTGTATGAGGACTGGCATAACAAGGACCCGGACCATGAGACCATCCCCATCCGCCTGGCCCTGCTCCATTGCCTGCACCAGACCACCCACTGCAGCGCTGGCCGGGACGCTCTGGTGGCGCAGGGGGGCATCAGCCTCCTCTACCACACCATACAGACCTGCCTGGCCAGTAACGGTCTGGAATCTCTGGTGGAGCCTGCTGTCCAGCTGATGAGGAAGTGCTATCCTAAATGTCCCCTGCCTCTGACCTCGGATCAGAGTGTTTATACCTTCCCCCTGCCTGGGAGGCCTACTGACACTGCTCCAGGACCCCAAGATGTCAGCTTCGAAGATGATAGTGACGACGACATTGAAAATGAAGAGGCTGACTGCGGCAAGGAATATGAtgatgacctggagtcagacgTGAACAAGCTGCGATCCCGGCCAGAACCTGACAGGCCCCTGGAGCAGCTGGGTCAGTACGTCAGACTGTGTCCTGAACTCCACCACGACTTCCAGGACTTGGACTCGGACTCTGAGGTAGATTCAAGCTCCGAGGAGGAGGGTCTACTCAATGAGGACTTCAGGACTGATGGAAGATCCAGAGTAAATCTCAGAGATTCTCCGTCCCATTCTCCCCTGGAGCACCCAGTCTCAACAGTAGAGGGAGACCAGGATGGCAAAGGAGAACCTCCAGAGAACCATCTGCAGGCCTGTGACTTTCACAGCCACTTCCTGTCTAGCGCCAGTGTGAAGCAGGACAGCCACCCTAGCATGGTAGACAGGCTTCTGGAGAAACACGGGGCCTGCATCCCCCACCATGACCCACGCATGTACACCGCAGCAGCAGCCCTCACCAAGTCCATCCCTGAGTATTCCATCTTAGCCTTCCCTGACTTCTGGGGACATCTCCCCCCGCAGAGTAAAGAGCCAATGGCTGGAAGGAAACCCAATGTGCAAAGGAAGAAGGTGTTTGAGGACGTCCAGCGTCTCCTCAACCCGGAGGACGTTATTGATGAAGTTGTGTTTGACCTGGAGGACCCCAGCTCCCAGGGCTCTCCTGATCACTCCGACTCCCTGAGCTTCTTCTCCAAGTTTGAGTGCGGGAACCTGCGCAAAGCCGTTCACGTCCGTAGtCACGAGTACGATCTGATCCTGAACGCGGACGCCAACTGCTCCCAGCACCACCAGTGGTTCTATTTCGAGGTCAGCGGTATGGCGGCAAACGTGCCCTATCGCTTCAACATCATCAACTGTGAGAAAGCCAACAGCCAGTTCAACTACGGGATGCAGCCTGTACTGTACTCTGTCAGAGAGGCTCTGGAGGGACGACCCAACTGGCTCAGAACTGGAACTGAGGTCTGCTACTACAGCTTCTGTCCGAGCCGAGGCCAAAAGAGCTCTTCCTTCTACACCCTGACCTTTACCGTGACCTTCAAACACAACGAAGACGTGTGCTACCTGGCCTATCACTACCCCTACACCTACTCTGCCCTCCAGAGTCACCTGCAGGTGCTGCAGCGGTCAGTGGACCCTCGCAAGTTGTTTTTCCGCCAGCAGAGTCTGTGCAACACACTGGCTGGTAACCCCTGTCCCCTGGTCACTATCACTGCCTGCCCCCCCTCCAAAAGCTGGAAGGACTTGCATCAGCTGCGTAACCGTCCGTGTGTAGTACTGACAGCACGGGTCCACCCTGGGGAGAGTAACGCCAGCTGGGTGATGAAGGGAACCCTGGAGTTTCTGTGTAGCAGTGACCCGGTGGCTGAGGCACTGAGGGAGGCCTACATCTTTAAGATTATCCCCATGCTCAACCCCGACGGGGTCATCAACGGCACTCACCGCTGCTCTCTGAACGGTGAAGATCTCAACAGACAGTGGATGAAGCCTGATCCTGTTCTGAGCCCTACTATATACCATGCCAAGGGCTTCCTCTACTACCTCAACAGCATCGGCAAGACACCCCTGGTGTTCTGTGATTACCATGGTCACTCGCGGAAGAAGAATGTGTTCCTGTACGGCTGTAGTGTCAAGGAGACTGTGTGGCAGTCAGGTTCTGCTGTCAATACTGCCACTCTGAAGGAGGACCCAGGATACAGGACCATCCCTAAGACTCTGGACCGGATAGCCCCAGCCTTCTCCTTTAACAGCTGCAACTACCTTGTGGAGAAGTCCCGAGAGGCCACAGCCCGGGTGGTGGTCTGGAGGGAGATGGGTGTGCTCCGGAGCTACACCATGGAGAGCACCTACAATGGCTGCGACCAGGGCGTCTTTAAGGGCATGCAGACTGGCACGGGGGAATTGGAGGAAATGGGGGTGAAGTTCTGTCAGTCGCTGCTCTCCCTGAGGAGGAACACCATGCTGTACAACAGAAGAGTCATCAGCCAGCCAACCCTGCTCAACCTGGATGACAACCTCCTAGACCACAAGTCCCGCAACTGCTTCGAGGATGATGAGCCACCTTGTGTAGAGGAAATTGAGTACCGGAATGACAGCTTCCCCGAGCCCAACAGAAATGATCTGGACTCTGAGGTCAATGGCAACACATCCAGcgctgaggaggaggaagatgatgagGAAGAGCACCAGACAACCGGGAACAGTCGACGACGCTCAATGAAGTCCCGCCTCTATCCTCACTTGATAGGCCAAGAGACTCTGAACATCAAGAGGAGCCCATGCAATGGGATGAACATTTCAAATGGACAATATCTGAGCTAAGGTCTCACAAGGACATTCCCCCAAAGCACTTATTTCCTTTttttaataatacattttattatgGAAATTCTAATGTATATGGTTGCTAAGTTAGTGGCTATTTCCCTTAGGCTTTCAGAACAGTGGATATATAAACTATAGCAGTAGAATAGTGGACAATGGCTTTGTATGATTTGTATATGACTTTGTCTGAGATGCATGTGAAGGACAGTCCGGCATGACATGGGCTTGTTGAGGCCATATTCTCCACAGAGAGCCTACTGTAAATGGGTATATGGGTGAAGTAGGGTACtagacagtattatattatatgagattatatttatattatttgtGTATAGTAAATGTATCAAATACATCAGAAATAGGGTGGGGCTGTCACAATGTTTACCTATTATTTACATGCAGTATGATCTAAGTTCCAAAATAACAGGCCACCATAAGCATTGTTATATTTTTAACATTCATAACCTGCAATGCATTTACATAGTGCTAACCAGCAAACTGTAGTTACTTTGggggaaaatatatttatattttttgaaatTATATAAATATGAAGTATTTGTATAACTAAACACATTTTGCTAGTTGACCGTTTTCATAATGTCTAAAGACGATAGTATTGAGTGGTAACTGTTCGTTATACATGTTCCATTCTCCTTCCTCTTAAATATGTTGGAGCCGAAGAGCACTACAATAAAATCAACTTTTATTGAA
>XM_036953095.1
AAACACTTAGAGGACAGACAGTAGTGAGAGGAAGGAGAGCTGACCGAGCCCCCCTTGTACACGCATCCTTTATTCCCCTTCTGGGTTAGACACAGCACAAACCATGCACCACTACAGCAAATGCAGTAACTTTACCTGGAACGGAACCCTGAAAGAGCTGGGTAACTACTCCTCCAGTGAGCGAGTACGGGCCAGCATGGCAGCCCCCGGCAGCTCCAGCGGACTAGAGGTTCTCCTGTCTACTCTGCAGAATGCAGGGGACATTGAGAGCACCCTCAATATCCTCAATGTGCTGGATGAGCTGCTTTCAGCTGgcacAGACAGACGGATCACCTACATGATCTCAAAGGGGGGCAGCGAGGCCCTCCTAAGCGCCCTGGTGACCACAGCCAGGACCTTCTCCCCCAACTTCACCATCCTCCTCCCCCTGCTGCACCTCCTGGCCAAGGTCGGACACAGAGACCGTCGTATTGGGATGAAGGCAGAGAAGGCGGAGGCTGTGCTGCCAACTCTGACTCTGCTGAAACAGAATGTAAAACACACCAGGAGGACGGCAGCCTGCCTTTGGGTCCTCCAGGTTTTCTGCTCCTCTGTCACCACAGCTACGCTGCTGGGACAAAACCGAGGCCTGGACGTTATATTCAGACTGATACCCCCTCACACTACGAGGCACAAACGCACCGTCAAGGCAGCAATCGATGCACTGGCAGCACTTTTATGTTCAAAGGCCAATGTCAGGGCCGCTGTGGCTAACGGTTACGTGTCTGCCCTGTTGAAGCTGTATGAGGACTGGCATAACAAGGACCCGGACCATGAGACCATCCCCATCCGCCTGGCCCTGCTCCATTGCCTGCACCAGACCACCCACTGCAGCGCTGGCCGGGACGCTCTGGTGGCGCAGGGGGGCATCAGCCTCCTCTACCACACCATACAGACCTGCCTGGCCAGTAACGGTCTGGAATCTCTGGTGGAGCCTGCTGTCCAGCTGATGAGGAAGTGCTATCCTAAATGTCCCCTGCCTCTGACCTCGGATCAGAGTGTTTATACCTTCCCCCTGCCTGGGAGGCCTACTGACACTGCTCCAGGACCCCAAGATGTCAGCTTCGAAGATGATAGTGACGACGACATTGAAAATGAAGAGGCTGACTGCGGCAAGGAATATGAtgatgacctggagtcagacgTGAACAAGCTGCGATCCCGGCCAGAACCTGACAGGCCCCTGGAGCAGCTGGGTCAGTACGTCAGACTGTGTCCTGAACTCCACCACGACTTCCAGGACTTGGACTCGGACTCTGAGGTAGATTCAAGCTCCGAGGAGGAGGGTCTACTCAATGAGGACTTCAGGACTGATGGAAGATCCAGAGTAAATCTCAGAGATTCTCCGTCCCATTCTCCCCTGGAGCACCCAGTCTCAACAGTAGAGGGAGACCAGGATGGCAAAGGAGAACCTCCAGAGAACCATCTGCAGGCCTGTGACTTTCACAGCCACTTCCTGTCTAGCGCCAGTGTGAAGCAGGACAGCCACCCTAGCATGGTAGACAGGCTTCTGGAGAAACACGGGGCCTGCATCCCCCACCATGACCCACGCATGTACACCGCAGCAGCAGCCCTCACCAAGTCCATCCCTGAGTATTCCATCTTAGCCTTCCCTGACTTCTGGGGACATCTCCCCCCGCAGAGTAAAGAGCCAATGGCTGGAAGGAAACCCAATGTGCAAAGGAAGAAGGTGTTTGAGGACGTCCAGCGTCTCCTCAACCCGGAGGACGTTATTGATGAAGTTGTGTTTGACCTGGAGGACCCCAGCTCCCAGGGCTCTCCTGATCACTCCGACTCCCTGAGCTTCTTCTCCAAGTTTGAGTGCGGGAACCTGCGCAAAGCCGTTCACGTCCGTAGtCACGAGTACGATCTGATCCTGAACGCGGACGCCAACTGCTCCCAGCACCACCAGTGGTTCTATTTCGAGGTCAGCGGTATGGCGGCAAACGTGCCCTATCGCTTCAACATCATCAACTGTGAGAAAGCCAACAGCCAGTTCAACTACGGGATGCAGCCTGTACTGTACTCTGTCAGAGAGGCTCTGGAGGGACGACCCAACTGGCTCAGAACTGGAACTGAGGTCTGCTACTACAGAAACAGCTTCTGTCCGAGCCGAGGCCAAAAGAGCTCTTCCTTCTACACCCTGACCTTTACCGTGACCTTCAAACACAACGAAGACGTGTGCTACCTGGCCTATCACTACCCCTACACCTACTCTGCCCTCCAGAGTCACCTGCAGGTGCTGCAGCGGTCAGTGGACCCTCGCAAGTTGTTTTTCCGCCAGCAGAGTCTGTGCAACACACTGGCTGGTAACCCCTGTCCCCTGGTCACTATCACTGCCTGCCCCCCCTCCAAAAGCTGGAAGGACTTGCATCAGCTGCGTAACCGTCCGTGTGTAGTACTGACAGCACGGGTCCACCCTGGGGAGAGTAACGCCAGCTGGGTGATGAAGGGAACCCTGGAGTTTCTGTGTAGCAGTGACCCGGTGGCTGAGGCACTGAGGGAGGCCTACATCTTTAAGATTATCCCCATGCTCAACCCCGACGGGGTCATCAACGGCACTCACCGCTGCTCTCTGAACGGTGAAGATCTCAACAGACAGTGGATGAAGCCTGATCCTGTTCTGAGCCCTACTATATACCATGCCAAGGGCTTCCTCTACTACCTCAACAGCATCGGCAAGACACCCCTGGTGTTCTGTGATTACCATGGTCACTCGCGGAAGAAGAATGTGTTCCTGTACGGCTGTAGTGTCAAGGAGACTGTGTGGCAGTCAGGTTCTGCTGTCAATACTGCCACTCTGAAGGAGGACCCAGGATACAGGACCATCCCTAAGACTCTGGACCGGATAGCCCCAGCCTTCTCCTTTAACAGCTGCAACTACCTTGTGGAGAAGTCCCGAGAGGCCACAGCCCGGGTGGTGGTCTGGAGGGAGATGGGTGTGCTCCGGAGCTACACCATGGAGAGCACCTACAATGGCTGCGACCAGGGCGTCTTTAAGGGCATGCAGACTGGCACGGGGGAATTGGAGGAAATGGGGGTGAAGTTCTGTCAGTCGCTGCTCTCCCTGAGGAGGAACACCATGCTGTACAACAGAAGAGTCATCAGCCAGCCAACCCTGCTCAACCTGGATGACAACCTCCTAGACCACAAGTCCCGCAACTGCTTCGAGGATGATGAGCCACCTTGTGTAGAGGAAATTGAGTACCGGAATGACAGCTTCCCCGAGCCCAACAGAAATGATCTGGACTCTGAGGTCAATGGCAACACATCCAGcgctgaggaggaggaagatgatgagGAAGAGCACCAGACAACCGGGAACAGTCGACGACGCTCAATGAAGTCCCGCCTCTATCCTCACTTGATAGGCCAAGAGACTCTGAACATCAAGAGGAGCCCATGCAATGGGATGAACATTTCAAATGGACAATATCTGAGCTAAGGTCTCACAAGGACATTCCCCCAAAGCACTTATTTCCTTTttttaataatacattttattatgGAAATTCTAATGTATATGGTTGCTAAGTTAGTGGCTATTTCCCTTAGGCTTTCAGAACAGTGGATATATAAACTATAGCAGTAGAATAGTGGACAATGGCTTTGTATGATTTGTATATGACTTTGTCTGAGATGCATGTGAAGGACAGTCCGGCATGACATGGGCTTGTTGAGGCCATATTCTCCACAGAGAGCCTACTGTAAATGGGTATATGGGTGAAGTAGGGTACtagacagtattatattatatgagattatatttatattatttgtGTATAGTAAATGTATCAAATACATCAGAAATAGGGTGGGGCTGTCACAATGTTTACCTATTATTTACATGCAGTATGATCTAAGTTCCAAAATAACAGGCCACCATAAGCATTGTTATATTTTTAACATTCATAACCTGCAATGCATTTACATAGTGCTAACCAGCAAACTGTAGTTACTTTGggggaaaatatatttatattttttgaaatTATATAAATATGAAGTATTTGTATAACTAAACACATTTTGCTAGTTGACCGTTTTCATAATGTCTAAAGACGATAGTATTGAGTGGTAACTGTTCGTTATACATGTTCCATTCTCCTTCCTCTTAAATATGTTGGAGCCGAAGAGCACTACAATAAAATCAACTTTTATTGAA

Function

NR:

description
cytosolic carboxypeptidase 4-like

GO: NA

KEGG:

id description
K23436 AGBL1, CCP4; cytosolic carboxypeptidase protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953106.1 False 4199 mRNA 0.52 24 64866284 65024865
XM_036953095.1 True 4204 mRNA 0.52 24 64866285 65024865

Neighbor

gene id symbol gene type direction distance location
akap13 LOC106560961 coding upstream 106891 64666135 ~ 64759393 (+)
anpepb LOC106560949 coding upstream 267668 64570855 ~ 64598616 (+)
LOC110501781 LOC106560965 coding upstream 420384 64428834 ~ 64445900 (+)
LOC118936791 LOC106560965 coding upstream 437562 64427891 ~ 64428722 (+)
LOC110493690 NA coding upstream 459880 64404119 ~ 64406404 (+)
map1lc3b map1lc3b coding downstream 506261 65531126 ~ 65536787 (+)
jph3 jph3 coding downstream 568603 65593468 ~ 65648660 (+)
lcat LOC106560930 coding downstream 767724 65792589 ~ 65801972 (+)
pla2g15 lypa3 coding downstream 787365 65812230 ~ 65821040 (+)
znf319b LOC106560927 coding downstream 805250 65830115 ~ 65839097 (+)
G171608 NA non-coding upstream 23980 64842023 ~ 64842304 (+)
G171596 NA non-coding upstream 38069 64827970 ~ 64828215 (+)
G171543 NA non-coding upstream 171280 64694715 ~ 64695004 (+)
G171495 NA non-coding upstream 244342 64621727 ~ 64621942 (+)
G171483 NA non-coding upstream 265706 64600362 ~ 64600578 (+)
G172147 NA non-coding downstream 79719 65104584 ~ 65105782 (+)
G172350 NA non-coding downstream 412127 65436992 ~ 65438383 (+)
G172379 NA non-coding downstream 450445 65475310 ~ 65475518 (+)
G172385 NA non-coding downstream 456858 65481723 ~ 65482142 (+)
G172386 NA non-coding downstream 457327 65482192 ~ 65482461 (+)
G170150 LOC106560975 other upstream 988051 63873248 ~ 63878233 (+)
G170131 NA other upstream 1035964 63820461 ~ 63830320 (+)
G169130 NA other upstream 2080641 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 2985860 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 3138830 61726959 ~ 61727454 (+)
G172639 NA other downstream 910731 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 1237761 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 1716955 66741820 ~ 66742213 (+)

Expression


Co-expression Network