LOC110493906 (ca5a)


Basic Information

Item Value
gene id LOC110493906
gene name ca5a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65730731 ~ 65752045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568509.2
ctagTTTCATGAGGAATAACCCAAGTGTCTCATTCCTCCTCTGCTTTACTCATTTCTTTAAATGGGATGTAGGGAGGAGGCTTACTGGTCTAACTCGAAGTCTGTTGAATTGCTGGTCTACTGTAAGACATTTTAATCGTATTTTATGTTTGGCATTTTGACTATAATAGCTAAATAATAATGCAGGAAGCTGGAGAGTACACAATGAAAATGCATCCAATGTGGCAGGGACCACTCGTTGCTCCAGGGGGTAACAGACAATCTCCTATCGATATTCGGGTGCGTAAGAGCGTTTTTGATCCGCACCTTAAGCCGCTGACCCCGGATTACGACCCCGGGACGTGCTCACAGATATGGAACAACGGGTACTCATTCCTGGTTGAGTACGACGACACCACCGACAAATCCATACTTAAAGGGGGTCCTCTGGAAGATAACTTCCGGCTGTGTCAGTTCCACTTCCATTGGGGGGAGAGCAACGCGTGGGGTTCCGAGCATACCGTGGACCGCCGCCTCTTCCCTGCTGAGCTCCACATGGTCCACTGGAACTCTAATAAGTACAGGCGGTTTGAGGAAGCTGTGATGGAGGAGAATGGACTGGCTGTTATCGGAGTCTTCCTCAAGATAGGGAAGAGACACGAGGGACTGCAGAAACTAGTGGATGCCCTACCTGCTGTCAGACACAAGGACAGTGTTGTTGAGTTCACTAGGTTTGACCCAGCCTGCCTACTGCCTGCTAACATTGACGATTACTGGACGTATGCAGGGTCACTTACCACTCCTCCTCTGACTGAGGCAGTGACCTGGATTATCATGAAGCAGCACATCGAAGTCAGCCATGACCAGCTGGCAGTGTTCCGGAGCCTTCTCTTCACCTCGGCAGAGGAGGAGGTGCAGAAGAGCATGGTCAACAACTTCCGCGTGCAGCAGCCCCTGAGGGGCCGCACTGTGCGGTCCTCGTTCACCCCCTTCCTGCAGCAGGAGCCACCTGCAAAAGGTCCACACACAGGCCACTGACCGGAGCCTAGGCCTGGGCAGGCAATAAGGACCTGGTTCCAGGACCCATAACCCCACACCAGACCTAGTCGGCACCTTTGAAGACAAAACAGAGAATGGAGCCAGGGTGTGGATATTTAGATATGTTAGGAAACATGGTTTGAGTTTTATCTCAACCTGATTCAAACAGACCCTCATCTGTTTATTATAGTTGGCCACTGGATATAAAAATGGGATAAGAGTTGTCTCCCAAAAGGCTGCAGGTTCCCCATTGTGTGGGAGAGTTTGAGAACCTGCTTTATGAACTGTGTATAACAAATGGGGGAATTAAATGAACATTCGATTAGAGTGAATATTTTCGTGACCACATAGCTATCAACTCTGCATTCAGAGCATGAGAATCCACCcactgaagctaggacagcagagtccgtTCCCATCTTCCGAAAACAACTGAAACCCTACCTCGTCAAAGAGCATCTTAAAGACATCTCAGTTTTATCCGcctaaatgcggaagacacatttcaattgaaTAGATTTAGTTGgacatctgactaggtatcccccctttccctttaaaAGGCGTACACTTGTCTTTTCCTATTAGCACTGAATCTGCTCTATAACTTCTGTATTGAGGAACAATGTACTGTGACtgtgatgtggttgtctcacctagctatcttcagTTTAATGCACTTACTGTAAATCGCTTTTGATAAAGGTGTctactaaattactaaaatgtaaatgtaaaatgtcatTCTTATGAAGGCCTGTGGACCTCTTCTTCTGACCATACACTTCAAGATGAAGTGGTGGTTAGAAAAGGTCTAATTAAAGATCATTTCTTCTTCTCTTGGTTTTGTTCGTTGTT
>XM_021568500.2
TAAAAACATACCCGAACGCAGCCATGTTgtttgcatgtgacaaatacaatttgattaggtGTATGGAAGAAGTCGGAGCTCAAGGGTGTAAACGAGTTTCCCTCAAGTAATTACGAGTTGGAGAGGCGTTCAAGTGGATTTTCCAGTCATATGCTCGTATTTACAAGATGCTATGAACGCAGCATCGTCTCGCGCATGTGGATTGAAACATCCCTCAGACGATAAAGCTGATAGGTCGGGATGGAAATTTTGCGACCCCCCACTCAGCTAACTCTTCGTAATGACATTGCTTTGTAAACACATTTACAATCTGTTATTTTCGTTGATGCAGCGCGTGAAATATCCGTAGGAAGCTAAATTAGATGGGTGCGGTGTTCAAGTAAGAGCACGCATCAACAGGACTAGTGAAAAGCTGTAAAACCGGATGGAATTTACTGTCAGTTCGTGAATGTTTTAATCGTGTGAAAGCCTGCCCATTTCGTTGCTACCAGTCAAGCGAGAGGTAGCCGACAATGTGGAAGACGAGGGGCCCTAAAAAGCAAATCCCGTTAGGTGGAAACAGCTATGAAACCAACCCGTAACACCTGGGGACAAGATGAGCAGTTGACTTGACGTTTTGCCTTACCCGAAACGATAAATAACAGTTAACTTTGACTCTCGCAACCCTCGAGAAGCGTATTCGAAGAATCCGAGATAATGGTGGCTCTCTCATCGGTTTTAACGCCCCTTGCTCGGCAGCTGCACAGACATCTCATCAAGCAAACTAAAGGGCAACGTTTGATACCTGTGAGAAGATGCAACCTCACCGCATGTTCAAGCAAATATGTGCTTTCTGCCTTGCATCCAATGTGGCAGGGACCACTCGTTGCTCCAGGGGGTAACAGACAATCTCCTATCGATATTCGGGTGCGTAAGAGCGTTTTTGATCCGCACCTTAAGCCGCTGACCCCGGATTACGACCCCGGGACGTGCTCACAGATATGGAACAACGGGTACTCATTCCTGGTTGAGTACGACGACACCACCGACAAATCCATACTTAAAGGGGGTCCTCTGGAAGATAACTTCCGGCTGTGTCAGTTCCACTTCCATTGGGGGGAGAGCAACGCGTGGGGTTCCGAGCATACCGTGGACCGCCGCCTCTTCCCTGCTGAGCTCCACATGGTCCACTGGAACTCTAATAAGTACAGGCGGTTTGAGGAAGCTGTGATGGAGGAGAATGGACTGGCTGTTATCGGAGTCTTCCTCAAGATAGGGAAGAGACACGAGGGACTGCAGAAACTAGTGGATGCCCTACCTGCTGTCAGACACAAGGACAGTGTTGTTGAGTTCACTAGGTTTGACCCAGCCTGCCTACTGCCTGCTAACATTGACGATTACTGGACGTATGCAGGGTCACTTACCACTCCTCCTCTGACTGAGGCAGTGACCTGGATTATCATGAAGCAGCACATCGAAGTCAGCCATGACCAGCTGGCAGTGTTCCGGAGCCTTCTCTTCACCTCGGCAGAGGAGGAGGTGCAGAAGAGCATGGTCAACAACTTCCGCGTGCAGCAGCCCCTGAGGGGCCGCACTGTGCGGTCCTCGTTCACCCCCTTCCTGCAGCAGGAGCCACCTGCAAAAGGTCCACACACAGGCCACTGACCGGAGCCTAGGCCTGGGCAGGCAATAAGGACCTGGTTCCAGGACCCATAACCCCACACCAGACCTAGTCGGCACCTTTGAAGACAAAACAGAGAATGGAGCCAGGGTGTGGATATTTAGATATGTTAGGAAACATGGTTTGAGTTTTATCTCAACCTGATTCAAACAGACCCTCATCTGTTTATTATAGTTGGCCACTGGATATAAAAATGGGATAAGAGTTGTCTCCCAAAAGGCTGCAGGTTCCCCATTGTGTGGGAGAGTTTGAGAACCTGCTTTATGAACTGTGTATAACAAATGGGGGAATTAAATGAACATTCGATTAGAGTGAATATTTTCGTGACCACATAGCTATCAACTCTGCATTCAGAGCATGAGAATCCACCcactgaagctaggacagcagagtccgtTCCCATCTTCCGAAAACAACTGAAACCCTACCTCGTCAAAGAGCATCTTAAAGACATCTCAGTTTTATCCGcctaaatgcggaagacacatttcaattgaaTAGATTTAGTTGgacatctgactaggtatcccccctttccctttaaaAGGCGTACACTTGTCTTTTCCTATTAGCACTGAATCTGCTCTATAACTTCTGTATTGAGGAACAATGTACTGTGACtgtgatgtggttgtctcacctagctatcttcagTTTAATGCACTTACTGTAAATCGCTTTTGATAAAGGTGTctactaaattactaaaatgtaaatgtaaaatgtcatTCTTATGAAGGCCTGTGGACCTCTTCTTCTGACCATACACTTCAAGATGAAGTGGTGGTTAGAAAAGGTCTAATTAAAGATCATTTCTTCTTCTCTTGGTTTTGTTCGTTGTT

Function

symbol description
ca5a Predicted to enable carbonate dehydratase activity. Acts upstream of or within ion homeostasis. Predicted to be active in mitochondrion. Is expressed in axial vasculature; brain; endocrine pancreas; pancreas; and posterior pancreatic bud. Orthologous to several human genes including CA5B (carbonic anhydrase 5B).

NR:

description
carbonic anhydrase 5B, mitochondrial-like isoform X1

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568509.2 False 1875 mRNA 0.47 8 65730731 65741201
XM_021568500.2 True 2502 mRNA 0.47 8 65730731 65752045

Neighbor

gene id symbol gene type direction distance location
slc7a5 slc7a5 coding downstream 14774 65685261 ~ 65715957 (-)
klhdc4 klhdc4 coding downstream 65160 65651079 ~ 65665571 (-)
zcchc14 zcchc14 coding downstream 159706 65530911 ~ 65571025 (-)
det1 LOC106560940 coding downstream 221665 65487387 ~ 65509066 (-)
ntrk3a LOC106560958 coding downstream 364732 65111274 ~ 65365999 (-)
LOC110493917 LOC106560931 coding upstream 10676 65762721 ~ 65778516 (-)
ccdc135 drc7 coding upstream 30285 65782330 ~ 65792797 (-)
usb1 usb1 coding upstream 69612 65821657 ~ 65829740 (-)
snrkb LOC106560921 coding upstream 279978 66032023 ~ 66069982 (-)
znrf1 znrf1 coding upstream 332181 66084226 ~ 66118713 (-)
G173328 NA non-coding downstream 6559 65723959 ~ 65724172 (-)
G173326 NA non-coding downstream 8410 65722121 ~ 65722321 (-)
G173309 NA non-coding downstream 36703 65693784 ~ 65694028 (-)
G173297 NA non-coding downstream 68094 65661852 ~ 65662637 (-)
G173293 NA non-coding downstream 72427 65654632 ~ 65658304 (-)
G173349 NA non-coding upstream 47847 65799892 ~ 65803350 (-)
G173393 NA non-coding upstream 123169 65875214 ~ 65877945 (-)
G173401 NA non-coding upstream 130392 65882437 ~ 65883420 (-)
G173428 NA non-coding upstream 163018 65915063 ~ 65917401 (-)
G173429 NA non-coding upstream 167953 65919998 ~ 65920259 (-)
G173121 NA other downstream 346858 65383437 ~ 65383873 (-)
G172141 NA other downstream 644543 65085572 ~ 65086188 (-)
tmem117 LOC106573612 other downstream 1562333 64102056 ~ 64170220 (-)
LOC110501772 LOC106560973 other downstream 1766910 63958607 ~ 63963969 (-)
G173370 LOC106560927 other upstream 81296 65833341 ~ 65839074 (-)
G173431 NA other upstream 169805 65921850 ~ 65922229 (-)
LOC110494122 LOC106560915 other upstream 525776 66277821 ~ 66299637 (-)
G173675 NA other upstream 583367 66335412 ~ 66338386 (-)
G173696 LOC106560906 other upstream 623181 66375226 ~ 66390766 (-)

Expression


Co-expression Network