LOC110493917 (LOC106560931)


Basic Information

Item Value
gene id LOC110493917
gene name LOC106560931
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65762721 ~ 65778516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568519.2
aaccgtcaTATAAAATCCACAAAAGAAGAAGCTACTATCTCGTCCTCTACAGTTTATATCTTGAAGCGGTCAACAATGGTAACGTTACAACTAGTGGGGTCTCTCCGAAAAGAGCTCGCTGACTCCTTATCCACTTGCCGGGTGCTGGTGGTCGGAGCTGGAGGAATTGGCTGTGAGCTCTTGAAAAATGTTGTTCTCACCGGTTTCAAAAATATAGAAGTGATTGATCTGGACATTATTGATGTGAGCAACCTGAACAGACAGTTCCTGTTCCAGAAGAAACATGTGGGAAAGTCCAAGGCTCAGGTGGCCAAAGAGACTGTGCTGCAATTCTGTCCTACTGCCAATATCACGGCCTACCATGACAGCATCATGAATCCAGATTACAATGTGGAATTCTTCAGGAACTTCATGCTTGTAATGAATGCCTTGGACAATCGAGTGGCTCGTAACCATGTGAACAGGATGTGTCTTGCAGCTGACATTCCCCTTATTGAGAGTGGCACAGCTGGCTACCTTGGGCAGGTGACCGTTATTAAGAAGGGTCTTACTGAGTGCTATGAGTGCCAGCCCAAACCCACACAGAAAACATTCCCTGGCTGCACCATTCGCAACACCCCATCTGAGCCCATACATTGCATTGTGTGGGCCAAGTACCTTTTCAACCAGCTTTTTGGAGAGGAAGATGCAGATCAAGAGGTGTCCCCTGACACAGCTGACCCAGAGCTTTcatGGAACCCTGCAGACACTGAAGCCCGAGCCACAGCATCTGACCAGGATGGAGACATCAAACGTGTGTCCACTAAGGACTGGGCACGTTCCACTGGCTACGACCCAGTCAAACTCTTCAATAAGCTTTTTAAAGATGACATCCAGTACCTCCTGACCATGGACAAGCTGTGGAAGAAGAGGAAAGCCCCACTGCCTCTGGATTGGCTTGAGCATCAGAAACTTACGTGTCCCCAGGGGGTGACTGGGACGGGATTGAAGGACCAGCAGGTGTTGGGTGTGGCAGGCTACTGCCAGCTCTTCTCCCGCAGTGTGGAAACCCTGCACTTCATGCTGGTTGACAAAGGGGATGGAGCAGAGCTTGTGTGGGACAAGGATGACCCTCCAGCGATGGACTTTGTGACAGCAGCCGCCAACCTGCGCATGTATATTTTCAGCATGAATATGAAGAGCCGTTTTGACATCAAGTCCATGGCAGGGAACATCATCCCAGCGATTGCCACAACCAATGCAGTCATTGCTGGCCTCATAGTGCTGGAGGCACTGAAGATTCTTTCGGGAGATGTGAAGCAGTGTCGCACGATCTTCCTGAACAAGCAGCCCAACCCCAGGAAAAAGTTGCTGGTTCCGTGTGCTTTGGACCCACCCAGTGCCAACTGTTATGTGTGCGCCAGCAAGCCAGAAGTCACAGTCAAACTGAATGTGCACAAAACTCTTGTGCTGGCCCTACAAGACAAGATATTAAAGGAGAAGTTTGGGATGGTGGCGCCAGATGTGCAGATCGAGGATGGGAAAGGGACAATCCTTATCTCCTCTGAGGAGGGTGAAACCGAAGCAAACAACTGCAAGTTCCTGTCTGACTTTGCGATTCGAAATGGCAGCCGTCTGCAAGTGGATGACTTTCTGCAGGATTACACACTCCTGGTTAATGTGATTCACTGTGAAAACTTGGAGAAGGATGTGGAATTTGAGGTGGTGGGTGATGCACCTGACAAGGCCCCAACCAGGTCACAAGAAGAGGGAAAGAACGTTGCCAATGGCAACAAAGATTCTTCAGAACCGTCCACCTCTTCCGAAGCTCCTGCTGAACAGAATGACATTCTGCTAGTTGATTCAGACGAGGAGGCGCCGTCCTCCAGCACTATGGCTGTCAGCATGGAGTCAGGAGGCCACAAGAGGAAGCTCCATGATGCTGAGACAGGCGAGGCCTCAGCTAAGCGCCAACACCTGAGTCAACCCTCAGCTGATGATGATAATGACATCATTGCGCTGGACTAGCATGTCTctcaacccccaccccccccctgtTAGAAGAAGGGAACTATTTTCATGCGCCATTCCTCTTACCAAACATTTGTAAATAATTATGTACAAAACTTACGTTTTCTGGTTATTTGGGGTCAACAGAGTACTGTTTACAGTGGACATTTTGATACATTGCATCTATTTGTGATAAAATATTTaagatttttttaaaataataatgtatttgTTTTGTCACAAGTCGGGTGTGTTATTTTGGGGAGATTGAAAGAAACATTTTAAAAGGTGCTACAGCTAGAATTTCTCCCCTATGTGGAAGCAGGTGAATTGCAACTGCAATAGGCATTCAAAGCAAATCTCCCCCTCCCATTCATCCCATTTCCCCGTAGAATTAGTAACgtgctttttatttttttcacctttatttaacaaggtaggctagttgaggacaagttctcatttacaactgcaacctggccaagataaagcaaagcagtttgacacctACAACAACAGTTACAAATGGAATCAACAAAcatacacagtgtgtgcaaataagggaggtaaggcaataaataggccatgttggcaaagtaattacaatatagcaattaaacactggagtgatagatgtgcaagtagagatactggggtacaaaggagcaagataaataaatacggTTTGGCGATGAGGTAGTTggctgggctatttacaggtgcagtGAGCTGGTaagagatatgagtctccagcttcatctttttttttttcttctttctttcagttctattacaatatatatatttttggatgGTACAATGCTTCCCAACACTATTCTGTTttctcacataaactgaaattgagCGAACCATGTAGAATATTTGCAAATAGGAAAAGTGATTTCTACATTGGCCAATTGACCCATCCTAGATAACACAGCCAAAGTCAAATTAGCTTTCCCATTCTGACAACAGATACTGCTCTGGTGGGAGAAATCAATAGGCGAATATCACtgccaatcacaacactggcaAGTAAGTAATATtgtgaaacactatcattccactattactgcagatagttagtcggaagtttacata

Function

NR:

description
SUMO-activating enzyme subunit 2-like

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
K10685 UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568519.2 True 3090 mRNA 0.46 17 65762721 65778516

Neighbor

gene id symbol gene type direction distance location
LOC110493906 ca5a coding downstream 10676 65730731 ~ 65752045 (-)
slc7a5 slc7a5 coding downstream 46764 65685261 ~ 65715957 (-)
klhdc4 klhdc4 coding downstream 97150 65651079 ~ 65665571 (-)
zcchc14 zcchc14 coding downstream 191696 65530911 ~ 65571025 (-)
det1 LOC106560940 coding downstream 253655 65487387 ~ 65509066 (-)
ccdc135 drc7 coding upstream 3814 65782330 ~ 65792797 (-)
usb1 usb1 coding upstream 43141 65821657 ~ 65829740 (-)
snrkb LOC106560921 coding upstream 253507 66032023 ~ 66069982 (-)
znrf1 znrf1 coding upstream 305710 66084226 ~ 66118713 (-)
LOC110494064 NA coding upstream 366330 66144846 ~ 66146269 (-)
G173328 NA non-coding downstream 38549 65723959 ~ 65724172 (-)
G173326 NA non-coding downstream 40400 65722121 ~ 65722321 (-)
G173309 NA non-coding downstream 68693 65693784 ~ 65694028 (-)
G173297 NA non-coding downstream 100084 65661852 ~ 65662637 (-)
G173293 NA non-coding downstream 104417 65654632 ~ 65658304 (-)
G173349 NA non-coding upstream 21376 65799892 ~ 65803350 (-)
G173393 NA non-coding upstream 96698 65875214 ~ 65877945 (-)
G173401 NA non-coding upstream 103921 65882437 ~ 65883420 (-)
G173428 NA non-coding upstream 136547 65915063 ~ 65917401 (-)
G173429 NA non-coding upstream 141482 65919998 ~ 65920259 (-)
G173121 NA other downstream 378848 65383437 ~ 65383873 (-)
G172141 NA other downstream 676533 65085572 ~ 65086188 (-)
tmem117 LOC106573612 other downstream 1594323 64102056 ~ 64170220 (-)
LOC110501772 LOC106560973 other downstream 1798900 63958607 ~ 63963969 (-)
G173370 LOC106560927 other upstream 54825 65833341 ~ 65839074 (-)
G173431 NA other upstream 143334 65921850 ~ 65922229 (-)
LOC110494122 LOC106560915 other upstream 499305 66277821 ~ 66299637 (-)
G173675 NA other upstream 556896 66335412 ~ 66338386 (-)
G173696 LOC106560906 other upstream 596710 66375226 ~ 66390766 (-)

Expression


Co-expression Network