XLOC_020671 (apobec2a)


Basic Information

Item Value
gene id XLOC_020671
gene name apobec2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 641342 ~ 651719 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040880
agtgCTGTTATAAAtactgaggtgtgtgtgtgtgtgtgtttagtttcaGAGATGGCCGATAGAAAGGGCAGCAGCGGCGTCAGCTCTCGTCTGAGCGTCAGGAGGAAGGAAAAGGCAGAAAATGATGCCAAGAAAGAGGAGAAAAGCCCAACAGAAGCGGAGAAACCCGAAGTGAACGGGAAAGAAGTGCCGATGGAGAACGGAGAGGCCGGAGCTGCTGCTGCAGACGGAGAAAAACCAGAACCTATAGAGCTGCCGCCATTCGAGACCATCACAGGGGATCGCATGGACCCGTTTTTCTTCAAGTTCCAGTTCAAGAACGTGGAGTACTCGTCCGGCCGGAATAAAACCTTCCTGTGTTACCTGGTGGACCACGGCGGCGAAGGCCTGATGAGGGGCTACATTGAGGACGAGCACGCTGGCGGACACGCAGAGGAAGCCTTTTTCCAGCAGATCCTGACCAACTACGACCCGGCCTGCAAATACACCATCACCTGGTACATGTCCTCCAGTCCCTGCGCCAACTGCGCAACCAAGCTGGCGGAGATCCTGCGCTCCAGGAAGAACATCCGGCTGGCCATCTTTTCGTCGCGGCTGTTCGAGTGGGAGGAGCCTGAGATCCAGGCAGGGCTGAAGCTACTAGCGTCCGTCGGCTGCAAACTGCGCATGATGAAGCCGCTGGATTTCACCTACACCTGGGACACGTTCGTGGAGAGCGACGAACAGCAGTTCACACCCTGGGAGGACTGTCAGGAGAACTACGAGTACTACCAGGACAAACTGGCCGACATCCTGCAGTGATgatgATGAAGCTAGTCGACGCACACACTTGGAAGagcgtgtttgtgtatgtgagaGGAACCTGATTCATTGAATACTTGTATGATTAAGAGAGTttatactttataattaatgtttgaGTTAATCACATCTTTGTTTACGTTTTGTTCATGTTTACTTGTCTGTGATGGACACGTTTcatatttcatttttcatttcatattttattgtttattttgcaaCACAGAGGTTTTTCTTTGACTACAAGAACAACAAAGTACATCACATCGAAAACAATTGCGCTGAAAATCTCTGTGTTCATGTCATCTGAATGTAGCTACTGTTTtcatttaatgtatttgatttgttttcagTATCAAGACAGATATAAGATGGGAAAACTCGCATATTACACAAAATTAAGGAGGATTTTGAgcaatttcagttttatttatgattttatacTCATCGCACTCTTTCATACTGTGAATTAATCAGGTAGTTTTGTTATAATAGCTACAAACTCAACTGTAAACACCGTTCCTGCTGCTGCATATAAATTACATTTGTGGAAGCAATAAACCATAAACAACCTTCACTATTTTGCAA

Function

symbol description
apobec2a Predicted to enable RNA binding activity and cytidine deaminase activity. Acts upstream of or within several processes, including cell dedifferentiation; heart looping; and sensory epithelium regeneration. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including adaxial cell; axial hypoblast; cardiovascular system; musculature system; and retina. Orthologous to human APOBEC2 (apolipoprotein B mRNA editing enzyme catalytic subunit 2).

GO:

id name namespace
GO:0080111 DNA demethylation biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:0016554 cytidine to uridine editing biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0031099 regeneration biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-15 Predicted to enable RNA binding activity and cytidine deaminase activity. Acts upstream of or within several processes, including cell dedifferentiation; heart looping; and sensory epithelium regeneration. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including adaxial cell; axial hypoblast; cardiovascular system; musculature system; and retina. Orthologous to human APOBEC2 (apolipoprotein B mRNA editing enzyme catalytic subunit 2).

Ensembl:

ensembl_id ENSDARG00000018881

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040880 True 1389 mRNA 0.46 3 641342 651719

Neighbor

gene id symbol gene type direction distance location
XLOC_020670 srsf3b coding downstream 18375 613265 ~ 622967 (-)
XLOC_020669 cdkn1a coding downstream 33530 603382 ~ 607812 (-)
XLOC_020668 tmcc2 coding downstream 41326 591809 ~ 600016 (-)
XLOC_020667 bysl coding downstream 83377 550828 ~ 557965 (-)
XLOC_020666 ccnd3 coding downstream 93582 537717 ~ 547760 (-)
XLOC_020672 NA coding upstream 8198 659917 ~ 697504 (-)
XLOC_020673 NA coding upstream 48494 700213 ~ 704907 (-)
XLOC_020674 arl8a coding upstream 59040 710759 ~ 718615 (-)
XLOC_020675 NA coding upstream 81525 733244 ~ 735244 (-)
XLOC_020676 NA coding upstream 87581 739300 ~ 760886 (-)
XLOC_020664 NA non-coding downstream 245442 392619 ~ 395900 (-)
XLOC_020657 NA non-coding downstream 325962 313710 ~ 315380 (-)
XLOC_020646 NA non-coding downstream 539895 101082 ~ 101447 (-)
XLOC_020641 NA non-coding downstream 605226 27146 ~ 36116 (-)
XLOC_020684 NA non-coding upstream 366626 1018345 ~ 1023531 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00402892_00406010 APOBEC2A coding CI01000186 null 402892 ~ 406133 (+)
bowfin (Amia calva) AMCG00013997 NA coding CM030125.1 CM030125.1 49347284 ~ 49352698 (-)