lcat (LOC106560930)


Basic Information

Item Value
gene id lcat
gene name LOC106560930
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65792589 ~ 65801972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568559.2
ACGTTTACTACACGGTAGAAGCACACATCTGCTCTTATAGAAGGTCAGATGCGCATCATGTTGATGTTGTTTAGAACGTTACCTGATTTGAGATGCACTTTGAAAGTGCGGTCCAACGATGGTCGAGTAACTGACCTCACATTTTCCCTCTGATTTCGCGCCCCACCTCTTTCACACACAGCATTAATAGGCCAGTTCTCCTcctcctgacctagtgagagacaAGACAACACTGTCAAGATTTGGACAGAATGGGATATGCGCACTGCTGTACCGTGCTCCTTATAGTATTCATTGCGCTACAGCAATCTGCTGGATTTTGGCTCTTCGATGTGGTATTCCCACCAAGTGCCAAACCGCAAAACAAAGTGGCCAACAATAGCACTCCGCCGGTTCTTATAGTACCTGGGAACCTAGGAAACCAGCTTGAGGCCAAGATTGACAAGCCAAGCCTTGTGCATTGGATGTGCTACAAAAAGACAGATGACTTTTTCACACTTTGGATTGACCTGAATATGTTCATGCCAATTGGGCTTGACTGTTGGATCGATAATATAAGAATTGTATACAATAGGACAACTCGCAAGACCTCCAATTCTGCAGGGGTGACGGTGAGAGTGCCTGGTTTTGGACAGACCTATTCTGTTGAGTTCTTGGACACAAACAAGTTGTCAGGATATTTTCACACTATGGTTACACATTTGGTCAACATGGGATATGTCCGTAATGAGACTGTCCGAGCAGCACCATACGACTGGAGGGTAGCTCCAAACGAGCAGGAGGAATACTTTGCACGACTGAAGAAGCTGATTGAGGATATGTACGAGCAGTATCAACAACCACTTTACCTCTTGGGACACAGCATGGGAAGCAATTATGTCCTCTACTTCTTATATCAGCAGACCCAGACTTGGAAAGACCAATACATCAAAGGCTTCATTTCACTTGGAGCACCCTGGGGTGGGGCAGTCAAGCCTATTCGAGTGCTAGCATCAGGTGAAAATGATGGCATCCCAATGGTATCCAACATCAAGATCCGGGAGGAGCAACGCATGACCACAACAAACCCCTGGATGCTTCCATTTGAAGAGGCATGGCCTGCAGACCATGTCTTCATCTCCACACCCTCATTCAACTATACCCACCAGGACTACCAGCGCTTCTTCAAAGACATTGACTTTGAGGATGGCTGGTTCATGTGGGAAGACACCAGAAACCTGACAGCTGGTCTGCCCCCTCCTGGTGTTGAGGTATACTGCTTCTATGGTGTGGGGCTGCCCACACCGGTTACCTATATTTATGACGACCAGTTCCCAAATGTAGACCCTATAGACTATGTGTATGCTGATGGGGATGATACAGTGGGCAGTCTTAGCATGAGTTTATGTAAGCGTTGGATAGGAAAGCAAGCACAGCCTGTCTATGTCAAGGAGTTCAGGGCCATGCCCCACTTGGAAATAGTATTCAATAGCAAGGTTCTCAACGTGGTCCAGAGTATCCTGGAAGGAAGATATGGGGAAGAGGAttctacattccatgagactgaTGAACGTCCCATTGGCTCTGCAGTCATGCAAGATCAAGTCCAGCCGGACAAGGCTCCCAAATCTACACTGTAAGCTTTTGGGGAGAAAATAATTCACTCTCCCAATGTACATACAATTACTGATGTAGTAGCTACTGAGTTGGActtacacactgagtgtacaaaacattaagaacacctgctcttttcatgacgtAGACTGAACAGGGGaacccaggtgaaagctatgatcccttattgatgtcacttgttaaatccacttcaatcagtgtagatgaaggtgagggttaattaaagaaggatttttaagccttgagacatggattgtgtatgtgtgcaactcaatattaggtgttcctaatgtttggtatactcagtgtatatgtacaCACATCCTAACTAGTATTACTAATGAGATGTGATATAGTATGCATATGCCTCTTGTTTCATTATGCTTATCTTTTCCTCTTAGCATGATAGGAAATcaaaaaataaatatgtatttggtcaGTGTACGTTTCCTTATTTTGATTTTCGAGTCAAAACAGAGTGGAAAAACAAGACGGctaaaaacatttttgaatt

Function

NR:

description
phosphatidylcholine-sterol acyltransferase-like

GO: NA

KEGG:

id description
K00650 LCAT; lecithin-cholesterol acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568559.2 True 2131 mRNA 0.44 6 65792589 65801972

Neighbor

gene id symbol gene type direction distance location
jph3 jph3 coding upstream 143929 65593468 ~ 65648660 (+)
map1lc3b map1lc3b coding upstream 255807 65531126 ~ 65536787 (+)
LOC110493825 LOC106560959 coding upstream 767724 64866284 ~ 65024865 (+)
akap13 LOC106560961 coding upstream 1033196 64666135 ~ 64759393 (+)
anpepb LOC106560949 coding upstream 1193973 64570855 ~ 64598616 (+)
pla2g15 lypa3 coding downstream 10258 65812230 ~ 65821040 (+)
znf319b LOC106560927 coding downstream 28143 65830115 ~ 65839097 (+)
LOC110493986 csnk2a2 coding downstream 50533 65852505 ~ 65865705 (+)
LOC110493994 fa2h coding downstream 82821 65884793 ~ 65917366 (+)
LOC110494001 LOC106560924 coding downstream 141187 65943159 ~ 65958750 (+)
G172525 NA non-coding upstream 58161 65730812 ~ 65734428 (+)
G172536 NA non-coding upstream 73924 65718453 ~ 65718665 (+)
G172535 NA non-coding upstream 74296 65717922 ~ 65718293 (+)
G172531 NA non-coding upstream 80151 65711596 ~ 65712438 (+)
G172510 NA non-coding upstream 108095 65684102 ~ 65684494 (+)
G172581 NA non-coding downstream 38330 65840302 ~ 65840526 (+)
G172582 NA non-coding downstream 40276 65842248 ~ 65845537 (+)
G172583 NA non-coding downstream 45025 65846997 ~ 65847232 (+)
G172586 NA non-coding downstream 46981 65848953 ~ 65849166 (+)
G172592 NA non-coding downstream 67357 65869329 ~ 65870268 (+)
G170150 LOC106560975 other upstream 1914356 63873248 ~ 63878233 (+)
G170131 NA other upstream 1962269 63820461 ~ 63830320 (+)
G169130 NA other upstream 3006946 62785358 ~ 62785643 (+)
G172639 NA other downstream 133624 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 460654 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 939848 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 1153552 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 1436918 67232278 ~ 67239902 (+)

Expression


Co-expression Network