usb1 (usb1)


Basic Information

Item Value
gene id usb1
gene name usb1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65821657 ~ 65829740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568620.2
TAAATTACCCCCAACAACTGTGTTTTTCTCGGAAGAATATCGCAAGCCATTCGTTAGTCAACGTTTCTGTAACTTCactgcacatttttttttaaattgattttaGACACGAATCAAGAAACTTGATATAAGGATTGATGTATGACCTTAATTTAGAAGAATGTTAGTCAGTTATAGTAGCAGCTCTGAAGAGGAGACAGAACATTTACGATTAGGAGGGAATGTAACAAAAAGGAAGCAAAGTTGGCACAAAGATGACAACTCATTGAGGAAGAAGCACAAATCAGAAGAGCACACCCTCAATGCAAGTAAGTGTATCTGTGAATAGGGAGCAGGATGACTCCAAGTCGAGACTGCCTGTTCCTGGCAGTGTGCTGGACATGTTCACGGAGGAAGATGAGGACCCACTGACTGACGACAGCATGCAACATGGTGGACGGATTCGCTCCTTCAAACACGAGAGGGGAAACTGGGCAACTTACGTGTACTTTCCATACATCCCAGAGGAAGGGTTCTTGGAGCTGCTTGATGAGATGACTGAAGTAGCAGCATCCCACAGCTTCTCCCTCACTCATACAGATGAGTTTCACCTCAGTTTATCTAAGACAGTGGTTCTGAGGCATCACTGGATCCAGCCTTTCATACAGTCCCTCAGAACAGGCTTGACACACAGCAGGAGGTTCATTTGTTTGGCTGAGAAGCTGAAGGTCTACTCTAATGATGAGAGAACCAGGATGTTCCTGGCTATGGAAGTCTCCACAGGACAGGCTCAGCTACTAGAGCTTGTGAAAGCAGTGGACAGCACTATGGAGGAGTTCAACCTTGACACGTTTTACAAGAATCCTTCCTTCCATATAAGTCTGGCCTGGTGTGTTGGTGACTGCACTGAACACATTCGCAAAAAGTGTCTGCAGGAGTTGCAGGGTCTGGTCGACTCCCATGAGGATGGACCCTTTCTCTTGAGGCTGGATTGTCAAGAGCTGCGTTGTAAGGCTGGGAACAAGACCTTTTCCATTCCACTACACTGACAAAACCAGTTGTCATTCAGTCTAATGTTGGATACCTCAACagtaaaatgtgaaaaaa
>XM_021568604.2
ATAAATTACCCCCAACAACTGTGTTTTTCTCGGAAGAATATCGCAAGCCATTCGTTAGTCAACGTTTCTGTAACTTCactgcacatttttttttaaattgattttaGACACGAATCAAGAAACTTGATATAAGGATTGATGTATGACCTTAATTTAGAAGAATGTTAGTCAGTTATAGTAGCAGCTCTGAAGAGGAGACAGAACATTTACGATTAGGAGGGAATGTAACAAAAAGGAAGCAAAGTTGGCACAAAGATGACAACTCATTGAGGAAGAAGCACAAATCAGAAGAGCACACCCTCAATGCAAGTGTATCTGTGAATAGGGAGCAGGATGACTCCAAGTCGAGACTGCCTGTTCCTGGCAGTGTGCTGGACATGTTCACGGAGGAAGATGAGGACCCACTGACTGACGACAGCATGCAACATGGTGGACGGATTCGCTCCTTCAAACACGAGAGGGGAAACTGGGCAACTTACGTGTACTTTCCATACATCCCAGAGGAAGGGTTCTTGGAGCTGCTTGATGAGATGACTGAAGTAGCAGCATCCCACAGCTTCTCCCTCACTCATACAGATGAGTTTCACCTCAGTTTATCTAAGACAGTGGTTCTGAGGCATCACTGGATCCAGCCTTTCATACAGTCCCTCAGAACAGGCTTGACACACAGCAGGAGGTTCATTTGTTTGGCTGAGAAGCTGAAGGTCTACTCTAATGATGAGAGAACCAGGATGTTCCTGGCTATGGAAGTCTCCACAGGACAGGCTCAGCTACTAGAGCTTGTGAAAGCAGTGGACAGCACTATGGAGGAGTTCAACCTTGACACGTTTTACAAGAATCCTTCCTTCCATATAAGTCTGGCCTGGTGTGTTGGTGACTGCACTGAACACATTCGCAAAAAGTGTCTGCAGGAGTTGCAGGGTCTGGTCGACTCCCATGAGGATGGACCCTTTCTCTTGAGGCTGGATTGTCAAGAGCTGCGTTGTAAGGCTGGGAACAAGACCTTTTCCATTCCACTACACTGACAAAACCAGTTGTCATTCAGTCTAATGTTGGATACCTCAACagtaaaatgtgaaaaaa
>XM_021568612.2
TTCAGGGGGACATAAATTACCCCCAACAACTGTGTTTTTCTCGGAAGAATATCGCAAGCCATTCGTTAGTCAACGTTTCTGTAACTTCactgcacatttttttttaaattgattttaGACACGAATCAAGAAACTTGATATAAGGATTGATGTATGACCTTAATTTAGAAGAATGTTAGTCAGTTATAGTAGCAGCTCTGAAGAGGAGACAGAACATTTACGATTAGGAGGGAATGTAACAAAAAGGAAGCAAAGTTGGCACAAAGATGACAACTCATTGAGGAAGAAGCACAAATCAGAAGAGCACACCCTCAATGCAAGGGAGCAGGATGACTCCAAGTCGAGACTGCCTGTTCCTGGCAGTGTGCTGGACATGTTCACGGAGGAAGATGAGGACCCACTGACTGACGACAGCATGCAACATGGTGGACGGATTCGCTCCTTCAAACACGAGAGGGGAAACTGGGCAACTTACGTGTACTTTCCATACATCCCAGAGGAAGGGTTCTTGGAGCTGCTTGATGAGATGACTGAAGTAGCAGCATCCCACAGCTTCTCCCTCACTCATACAGATGAGTTTCACCTCAGTTTATCTAAGACAGTGGTTCTGAGGCATCACTGGATCCAGCCTTTCATACAGTCCCTCAGAACAGGCTTGACACACAGCAGGAGGTTCATTTGTTTGGCTGAGAAGCTGAAGGTCTACTCTAATGATGAGAGAACCAGGATGTTCCTGGCTATGGAAGTCTCCACAGGACAGGCTCAGCTACTAGAGCTTGTGAAAGCAGTGGACAGCACTATGGAGGAGTTCAACCTTGACACGTTTTACAAGAATCCTTCCTTCCATATAAGTCTGGCCTGGTGTGTTGGTGACTGCACTGAACACATTCGCAAAAAGTGTCTGCAGGAGTTGCAGGGTCTGGTCGACTCCCATGAGGATGGACCCTTTCTCTTGAGGCTGGATTGTCAAGAGCTGCGTTGTAAGGCTGGGAACAAGACCTTTTCCATTCCACTACACTGACAAAACCAGTTGTCATTCAGTCTAATGTTGGATACCTCAACagtaaaatgtgaaaaaa

Function

symbol description
usb1 Predicted to enable 3'-5'-exoribonuclease activity. Acts upstream of or within neutrophil differentiation and regulation of RNA splicing. Predicted to be active in nucleus. Is expressed in several structures, including gonad; head; heart; liver; and pectoral fin. Used to study ablepharon macrostomia syndrome and poikiloderma with neutropenia. Human ortholog(s) of this gene implicated in poikiloderma with neutropenia. Orthologous to human USB1 (U6 snRNA biogenesis phosphodiesterase 1).

NR:

description
U6 snRNA phosphodiesterase isoform X2

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K23093 USB1; U6 snRNA phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568620.2 False 1086 mRNA 0.45 7 65821657 65829728
XM_021568604.2 False 1083 mRNA 0.45 7 65821657 65829729
XM_021568612.2 True 1079 mRNA 0.45 7 65821657 65829740

Neighbor

gene id symbol gene type direction distance location
ccdc135 drc7 coding downstream 28860 65782330 ~ 65792797 (-)
LOC110493917 LOC106560931 coding downstream 43141 65762721 ~ 65778516 (-)
LOC110493906 ca5a coding downstream 69612 65730731 ~ 65752045 (-)
slc7a5 slc7a5 coding downstream 105700 65685261 ~ 65715957 (-)
klhdc4 klhdc4 coding downstream 156086 65651079 ~ 65665571 (-)
snrkb LOC106560921 coding upstream 202283 66032023 ~ 66069982 (-)
znrf1 znrf1 coding upstream 254486 66084226 ~ 66118713 (-)
LOC110494064 NA coding upstream 315106 66144846 ~ 66146269 (-)
si:dkeyp-50b9.1 LOC106560918 coding upstream 380696 66210436 ~ 66223350 (-)
LOC110494122 LOC106560915 coding upstream 468448 66277821 ~ 66299637 (-)
G173349 NA non-coding downstream 18307 65799892 ~ 65803350 (-)
G173328 NA non-coding downstream 97485 65723959 ~ 65724172 (-)
G173326 NA non-coding downstream 99336 65722121 ~ 65722321 (-)
G173309 NA non-coding downstream 127629 65693784 ~ 65694028 (-)
G173297 NA non-coding downstream 159020 65661852 ~ 65662637 (-)
G173393 NA non-coding upstream 45474 65875214 ~ 65877945 (-)
G173401 NA non-coding upstream 52697 65882437 ~ 65883420 (-)
G173428 NA non-coding upstream 85323 65915063 ~ 65917401 (-)
G173429 NA non-coding upstream 90258 65919998 ~ 65920259 (-)
G173436 NA non-coding upstream 100817 65930557 ~ 65930764 (-)
zcchc14 zcchc14 other downstream 284876 65530911 ~ 65571025 (-)
G173121 NA other downstream 437784 65383437 ~ 65383873 (-)
G172141 NA other downstream 735469 65085572 ~ 65086188 (-)
tmem117 LOC106573612 other downstream 1653259 64102056 ~ 64170220 (-)
LOC110501772 LOC106560973 other downstream 1857836 63958607 ~ 63963969 (-)
G173370 LOC106560927 other upstream 3601 65833341 ~ 65839074 (-)
G173431 NA other upstream 92110 65921850 ~ 65922229 (-)
G173675 NA other upstream 505672 66335412 ~ 66338386 (-)
G173696 LOC106560906 other upstream 545486 66375226 ~ 66390766 (-)

Expression


Co-expression Network