LOC110493994 (fa2h)


Basic Information

Item Value
gene id LOC110493994
gene name fa2h
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65884793 ~ 65917366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568646.2
GATGAATAATTAATGATATGCTAATGAGCTGGTCGAGTAAGCCCAGTCAGGGCTGAGAAATGAAGTAGAAGTTAGTACGCGGTCAGTCGGCCTGGGGGTCTTTACGCGCTGCTTTCGTTTATGCTTTTTTTTTTGTGGACACTTCAACATCGCAATGTCTCCATTGGTGTCCCCTCGGGTTTTCTCTGAGATGGAGGTAGCCCGTCATTGCACAAAATACTCATGTTGGGTATTATTGGGGACGAAGGTTTATGATGTGACGGGATTCCTTCGAATGCATCCGGGTGGAGAGGCTCTGATATTACACAGGTCAGGGAATGATGTCAGCCTGGAGATGGAGGGACCCCCGCACCGCCATTCCGAGAACGCACGGCGGTGGATGGAACAGTACTACATTGGAGAGCTGGACACAGACAGTAATGCCGATGAAACTCAGacagtgagggagaggaggaagacccAGGAGCACACTGTGGACGAGGAGCCTTCACCCCTCAGCAAATGCAGTCAAGTCGACCTAGACACGGACCTGGTGGACTGGCGGAAGCCCCTGGCCTGGCAGGTGGGCCACCTTGGAGAGAAATATGACACCTGGGTGCACCAGCCTGTGGACCGGCCCATTCGCCTGTTCGGGAACGAGTTTTTAGAGGCCAGCACTAAAACGTCCTGGTACATGGTCCCTGCTGTGTGGATGCCACTGGTCTTCTATCTCAGCTGGTACTGCTACACCACCTTGGCACTGGAGACAACCAGACTGTTTGCCAGCACAGACTACTCCGTCTTGGTGCACAAGTACAGCTTTCCCCTCATCTTCATAATGGGCATGGTCATGTGGACCTTCATCGAATATTGCATTCATCGCTTCGTCTTCCACATGCGCCCGCCCGCCCACAACTATTACCTCATCACCATTCACTTCCTGCTGCACGGACAGCATCATAAGTCACCCTACGATGGCTCCCGCCTGGTCTTTCCTCCTGGCCTGGCCTCAGTGGTAGTAGGCAGCTTCTACCTGCTGCTAACCAAGGCCTTCCCCGAGACCCTGGGGGTGTCCCTGTTTGTGGGGGGGCTGTTTGGGTACGTGGTGTACGACATGACCCACTACTACCTTCACTACGGCTCCCCTCAGAGAAACACCTACCTGTACAGCCTCAAGGCATACCACGTCAAGCACCACTTTGAGCACCAAAGAGCAGGGTTTGGAATCAGCACCACATTGTGGGACCATCCGTTCAACACTGTAATCCCCGAACAAACCTTTTAGAAGACCCAACTGAATCTACTCTCCAGAGAGGGGCGACCTTCCCCCCATCCCTCTTACACCTGACAACTTAACCCTTCAATAACCCCCACCCTGAGACTCCAGCATGTCCCTCTAAACTACTACaaaccagtctgtctgtctggctcactGCTTCACTGCTACAGTGCTACTCTCGTCTccgaacaaaacaaaacacacttCTCCATAATGTTCCACCTGCTAGTCAAAGCAGGAAGGTATCTTTTCAGAACTGGAGGGGGTGCAGGGTCCGGGATGGGGAACATGTTTATATTTCTTTATTGTTTGTTCATTTTGCTTATAATGGACAAAAGGATACAATTAAGATTGTATATGACTATGATGCTGTAAGGATGAACTTACATGCAGTCCCAGGTTCTAACGGTCAACATCCCaccagagacagtagagagagtgatttgaaagtgagagaaggagtgtgcatgtggaaagagaggagaatgagtgatGTATAGGAGGGTGAAAAGTGAAAGAGATTACACTTGTCCTTATAGAAGCTGTCCAAGTTTATACATTTACATATACCTTTAAGAAAACTCAGGAAAGCCCCTTCTCTACCCCTGGAGTGTTGATGCTGCAGAATGCCCTCCTCTATTCTAAAGGTCAAGCGTTACTAATGCTCTTCCCACAGAAAAAAAGCTTTTGACAGCATGTGCTCACCAAATCCAAAGATGGTTCATCTGTAGTGTCTTGCCTTCACTGGGACATTTCCATAAAATATTCTGTGGGAAGGTATGAAGGGAGCTGATTTACTCGTTCACTATGTTCATATTAATGTATATTTCAACATAATGTCTATTTGTATTCATTAATGGTATGACTAAATATATAGAAATATGTGTGCAAACAAAGAGATACTGTATCTTTCCCATTCCATCTCTCTCATATACACTGGTTTGTTGTTGACATGTCAAATGAAGCTTCAGAATGAGTTGATGTTTTactaggtggagagagagatggagtcgGATGTATACATCCTGATTTTTGTGTGGGTGGATGTATTGAAGGATGGCTGGATACGTGGTGTTATGGATACAGAGACAGAACGCTGAGGGCATGAGACCGGTCTATCAGGTCTCCTGCTGTAGGGAGCAGCACGTGGCTAATGTGATAAGGTAAAGGATGGGGCCCAATTTATATTAGGACCTCACTATAGGTGCCCGTTCTCCTCCCTGCATGTAGGGTGATGACCTAGCGTCAGACTAAAGTGTAGGAGACCCTTGGTTCAGTTACAGGTTGATCCTCAGCTGTTCTGACGAATTGTTTTCAATCCTAATGTTTCTATCTTCTGCATTCCATGAGTTTTTGTTCATTCCCTTCTTGATTTTCTTTACAGTTTTAATTAACCCTTAGGTGAAGCCACTACAGATGAGCCCAAATACTCCTACTGTTCCTCAGGAGACCATGGAAACAGACAGGGGACTGGGGCCTGACGAAGCCCATGTGGTCTCAGACAGTGATTTGAACCATTAGTTAGGTCATGTTAGTGATAGTATATTGCTACAGTAAGGAAGGCTTCCGGGGGCCACAGTCTCCTATCACCTCCAAGGGCCTTGATTGGGGGGATTTATAAGACGAGAGTAATTCTTCATTGCAAAAATATTGTGTGTAATCCAGCATGTACTTAACTGTATAAAAATTGCAGTGGGGGTGGGAGTTATCTGTTTGGAACTCAGGTCAGGGTCAGGGGtcggggttgggttgggttgtgttcACACTGTATTCAGACAGAGAGCGGTCAGCAGAGCATCAGTAAGATATCCAGATTAGCATCAAGGACTCACATTACAGTACTGAGATGATGCATGTTCAAACCAATATTTGTACTCATGCTTATGATGACTTGTAATGATGAACTTTTTACATGACTTGATAAAGAACCAACAATTGTTGCGATGTCAATAATGATAATAGTGCTGAAAATAAGGATGATgttgataatgataataatgatgatgttGATGCCCCCTCttccctgccctcccctcaagctTCTGGTTGGGTTAAAGTAataatacatacatatatatttataaacaACTTGTAAACTTTAATACTGTCAAGTGGAAATATCTCTGCTAAATTATGCATTTAAATAATTTTCCAAATCTGTTTACCACAATACATATTTTAACTTTGTCTATGCAAATGCAGATATATCTGTAAATAAATGCCTGTATATTTCTGATGATCAA

Function

symbol description
fa2h Predicted to enable fatty acid alpha-hydroxylase activity. Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in EVL; digestive system; ectoderm; peripheral olfactory organ; and pronephric duct. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 35. Orthologous to human FA2H (fatty acid 2-hydroxylase).

NR:

description
fatty acid 2-hydroxylase

GO: NA

KEGG:

id description
K19703 FA2H, SCS7; 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568646.2 True 3501 mRNA 0.45 7 65884793 65917366

Neighbor

gene id symbol gene type direction distance location
LOC110493986 csnk2a2 coding upstream 19088 65852505 ~ 65865705 (+)
znf319b LOC106560927 coding upstream 45696 65830115 ~ 65839097 (+)
pla2g15 lypa3 coding upstream 63753 65812230 ~ 65821040 (+)
lcat LOC106560930 coding upstream 82821 65792589 ~ 65801972 (+)
jph3 jph3 coding upstream 236133 65593468 ~ 65648660 (+)
LOC110494001 LOC106560924 coding downstream 25793 65943159 ~ 65958750 (+)
LOC110494008 LOC106560923 coding downstream 58379 65975745 ~ 66031253 (+)
ldhd ldhd coding downstream 155925 66073291 ~ 66084029 (+)
gins3 gins3 coding downstream 202560 66119926 ~ 66135667 (+)
LOC110494051 LOC106560919 coding downstream 228224 66145590 ~ 66190766 (+)
G172592 NA non-coding upstream 14525 65869329 ~ 65870268 (+)
G172586 NA non-coding upstream 35627 65848953 ~ 65849166 (+)
G172583 NA non-coding upstream 37561 65846997 ~ 65847232 (+)
G172582 NA non-coding upstream 39256 65842248 ~ 65845537 (+)
G172581 NA non-coding upstream 44267 65840302 ~ 65840526 (+)
G172630 NA non-coding downstream 1547 65918913 ~ 65919218 (+)
G172637 NA non-coding downstream 11998 65929364 ~ 65929679 (+)
G172658 NA non-coding downstream 48507 65965873 ~ 65970958 (+)
LOC110494202 polr2c non-coding downstream 442631 66359803 ~ 66363985 (+)
map1lc3b map1lc3b other upstream 348006 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2006560 63873248 ~ 63878233 (+)
G170131 NA other upstream 2054473 63820461 ~ 63830320 (+)
G169130 NA other upstream 3099150 62785358 ~ 62785643 (+)
G172639 NA other downstream 18230 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 345260 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 824454 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 1038158 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 1321524 67232278 ~ 67239902 (+)

Expression


Co-expression Network