LOC110494001 (LOC106560924)


Basic Information

Item Value
gene id LOC110494001
gene name LOC106560924
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65943159 ~ 65958750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953388.1
GTATTTTGTCTGTTGCTCTAAAGCGGAAAGGTGGAATAAACAAGTTGGGAGCAAGTTTTGTCATTTGTCAAGTTCTCTGTTGAGGTATCTTTTCTTCTCCCACATGCCCACACAACCAAGCAAGATCTCACAAAAGGATAACACAAATCTTCTTCTTTGCAGGAATTAGGAAAACAAGGGACGTGATGATGTCGCTGGAGGATAAAGGCTCTGTCCAGACACAGACTAAGGTCCTGTCCCAGGGCTGCTGGACGCAGGTCAGCTGTCCCTGCTGTGTGTCTAAGCAGGTGGAGCCCCTGGTCCTCATCCAGCTGTCAGACAGCGTCCAGCCTGTCACTAAGAGGTGGCTCATCTCCCTGATTGAAGCTTCAAAGAGACATGGAGGAGCAGCATTGCTGGCCCACCCTGGAGAGGATGAGTGTGGAAATGTGATTGTGGTGTCTGCTCCTCGCTGCACCCTTCTCAGAGCCACGGAGGATCTGGGTCTGTGTAAGAAATACCGCAATGAAGAGATGGCTTCTTTCTCCTACCACGACAGAGACAACTTCACCAATGTTGATGACATGCAGGAGTTCCTGACGCTAGCGGAGCGTCAGTACATAGTCAAGAATGAGCTGGACTCTCTACAGGCCCAGAAGAAGCAGAGAATCCCTGGAGTCCCAGAGGCTCCGGGGGTCCTGGAGGCCTGGGAAAACATCTgtcagaagCTGGTGAGGGCAGGAGTGATAAAGGACATCTTCCCTCTACATGACCAGCAGAGACTGAATGACCTCGGCAGAAGGTGGTACTCTAAGAAGCAGATATGGAGACAGCCTCTCGATGCAATCCAGTCATACTTTGGAGGCACCATGGCGTTTTACTTCagctttctgcaattctacacctGGGCCCTGATTCCCCCTGCCTTCCTGGGCCTTGTCCTGACCTTTCCGCTGCCTGGAGGTGGTGGGGTGGTGAAGGAGCAGGCCAGGaagggggtgatggaggaggaagatTATGGCCTCTCAGTCAGCGGTCACATGGTACAGGCTGTATTCAGCATGCTGTGGTCCACGGTGTTCATCGAGTTCTGGAAGCGCCGGagctcctccctctcccaccgcTGGGGCACATGGCACCTGACCGAGCGCTTCGCTGAGCCCCGCCCTGGCTTCCATGGCACCCTGGGGATCAACCCTGTGACAGGCCGTCTGGAGCCCCTGTTCCCGGAGTGGCAGAGGCAGCTGCGTGTGGGCCTGGTGTCGTTTCCCCTAGTGGGGCTGTTCCTGGGACTGGTGGTGCTGGGAATGACAGGCCTCTACCACGGAGAGGCCCTGGTACAGGGCTTCCATCAGGACAGCGGCTCCCTGTTCTCTGGAGTTCTGCTCTACATGCCCTCCATAGCCCATACAGTCTACACCACCATATTAAAGAATGTGTACCACGCTGTGGCCATGCAACTTACCAAGTGGGAAAACCACAGAGAGGAGTCCTCCTTCCAGAACCATCATATCACCAAAGTCCTCCTGTTTACTTTCTTCAACAACTTTGCTGTGCTCTTCCACATTGCCTTTTACAAACAGGACCTACCACTGCTACGCAAGAGGCTTGCCTCTCTGCTAATTCTGAACCAGCTGGTGAACCAGTGTACAGAGGTGGTGGTGCCGTTTATAGTCGACCGCTTCCTCAGTGCTCCCCAGAAGAAAAAGCAGGAGGACGACCTAGAGATGGACAAACTCAGAGCCCAGAGAAGACTTCCCCCTTTTCCAGGCCTGTTTGCGGAGTACATTGAGTTGCTGGTGAAGTTTGGATATTTGAGTCTGTTCTCCTGTGTATACCCGCTCACTGCCGTCCTCCTGCTCCTCAACAACATCACAGAGATCCCAGGGGATGCCTACAAGATTTGTAAACTGTTCCGCAAGCCATTCTCTGCCCCTGTGTCCAATATGGGGGTGTGGCAGACAGCGTTTGAGGTTCTGCGCTTTGTCTCAATCATGTCTAACTGCTGGCTGCTACTGCTGTCCCCTCACGTCCAGGAGTTCTGTCTGGAGGGAGGGATCAGCGGCAAGAACATCATACTGGTCGCCATCCTGGTGGAGCATGTCCTGATCCTGGTCAAGATGATTCTAGCCTTTATGATCCCAGATGAGCCTGACTGGGTCAGAATCAAGAGGGAACAGATAGAGTTTAACTCTATGCAAGCTCTAGGGAAGCAGAAGCTATGAAGCCCCTGTGGGAGAGTGAGTGTCCTGTTGCTCTTCAAGTGGTGGTCTGGACTAGGGAGCTCATTAGAATTAGCTGCCATAACGAGGGCGGACAGGAGCATATAAAGACACGTCTGTTTGGCCTGTGAACCTAAACCCTGGAGCCAGCCAGTCTGAGAAGCTCTCTCAGTATCTCCCTCTGAAGGACTCCCTCTCCAGTCATAAATACATTCCAGAAAGGAAACACCAAATATTCGTTTAACCATTTATTAGAGAATATTAACAGTACAATAGGTCTTGGCAATAGGCTCTGCTCCGTCAGGGTAGCTCACTGTCagagcaaagcatcaatacataacaaaataactacagGCAGTGAGCAAGGTTTACTATACCAATCCACCTTCAGGAAGGAAAACAGAACTAAACAGGTGGAGGttgggggggtggtggtgggtagCAAGAAAAACAAATGCATACTAGCAGTAGCAGCAAACGGCAGCAGAGGATGTGTGAGCAGAACCTGGTCATCTTAAATAGACTGCCATATTAAGGTAGGAAGTGTTGTTAGCATCTGGTTGGTGCAGTCTCAGCTGATGCAGAAACCAAGGTTTTCCTTCTGAACCTGCTTTGCTTTATGTCTCATGTCATGGAAGATACAAGAGGCGGGGGTCTGGGACTGAAGGCAAACCAAATGAAGAGCTAGGAGCGTTAATTGTGTTAATGCAGTATTGCATCTTCAGCTTAAGGTGTCTGAGATTTCTAAAATACTGGGTAGCTTTGGACTTTGTGTGGCACATACTATGCAAGTATCTAATTTGCTCTAATCACACAAGTGCTGtatcattaaaaaatatattctcCACAGTGGTTTATGTACTTTCACCTCATGAGTGTTACATTGTACGCttcagacacattataaa

Function

NR:

description
anoctamin-10-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953388.1 True 3109 mRNA 0.50 13 65943159 65958750

Neighbor

gene id symbol gene type direction distance location
LOC110493994 fa2h coding upstream 25793 65884793 ~ 65917366 (+)
LOC110493986 csnk2a2 coding upstream 77454 65852505 ~ 65865705 (+)
znf319b LOC106560927 coding upstream 104062 65830115 ~ 65839097 (+)
pla2g15 lypa3 coding upstream 122119 65812230 ~ 65821040 (+)
lcat LOC106560930 coding upstream 141187 65792589 ~ 65801972 (+)
LOC110494008 LOC106560923 coding downstream 16995 65975745 ~ 66031253 (+)
ldhd ldhd coding downstream 114541 66073291 ~ 66084029 (+)
gins3 gins3 coding downstream 161176 66119926 ~ 66135667 (+)
LOC110494051 LOC106560919 coding downstream 186840 66145590 ~ 66190766 (+)
si:ch211-194m7.8 LOC106560917 coding downstream 249099 66207849 ~ 66210600 (+)
G172637 NA non-coding upstream 13480 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 23941 65918913 ~ 65919218 (+)
G172592 NA non-coding upstream 72891 65869329 ~ 65870268 (+)
G172586 NA non-coding upstream 93993 65848953 ~ 65849166 (+)
G172583 NA non-coding upstream 95927 65846997 ~ 65847232 (+)
G172658 NA non-coding downstream 7123 65965873 ~ 65970958 (+)
LOC110494202 polr2c non-coding downstream 401247 66359803 ~ 66363985 (+)
G173804 NA non-coding downstream 571365 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 571702 66530452 ~ 66530710 (+)
G172639 NA other upstream 7026 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 302183 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 406372 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2064926 63873248 ~ 63878233 (+)
G170131 NA other upstream 2112839 63820461 ~ 63830320 (+)
LOC110494096 LOC106561115 other downstream 303876 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 783070 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 996774 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 1280140 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 1527413 67486128 ~ 67488205 (+)

Expression


Co-expression Network