snrkb (LOC106560921)


Basic Information

Item Value
gene id snrkb
gene name LOC106560921
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66032023 ~ 66069982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568680.2
TGTATAGGCCCTCAGCCCTTCCTCTCGCGCACTGGGAGAGAACATCGTCCGCAGAGGACGCGAGTGAGCTGGAATGCTTTGACGTCAGTAGCAGGCCAGCGCTCAGAGCCGATCAGACAGTGAATGAATGCGCGAATACTGCAGAGAGGCGCACTCGCAGCATCGACCATCCATCCCTGTTGCCTCGTCCTTTCGGAGACATCGGGGCATACACACGCCACTGGCACAGTGAACACAACAGGACGTCGGGAAAATATTGGAAACCAATAGCTTTACGATTCTAACTCATCAAGTAGTATTGGAATAGCAAGAAGTGCCAAGCTGTTTACAGAGGCAGGTCGCTCCACAAGCCTCAAGGATAACGCATTTTCCTCTCAATGGTAATgcatcagtagagagagactcCATAGAGCTTCAAGACCCCTCCAAGGCCCCTCATCCAGACTGAGACTGTCTCCAGCACCAACACACCACTCCCCTCACCCCGTCTCTGCCCTGCCCCACCCAGACATGGCTGCCTCCAAGAGCGGCTACGAGGGAAAGATCGCCGGCCTCTATGACCTGGATCGCACGCTGGGTAAAGGCCACTTCGCTGTTGTCAAGCTGGCACGCCACGTCTTCACAGGCCAGCTGGTGGCGGTCAAGGTGATCGACAAGACCAAGCTGGACGCCATGGCGACGGGCCACCTGCTGCAGGAGGTGCGCTGTATGAAGCTAGTGCAGCATCCCAATGTGGTGCGGCTCTACGAGGTCATCGACACTGCCAACAAGCTCTACCTCATCTTGGAGCTGGGTGATGGAGGAGACATGTATGACTACATCTTGCGCCACGAGGGTGGCGTGGCTGAGGACACGGCTAAAGTTCACTTCGCCCAGATCGTCCGAGCAATCTCCTACTGCCACCGGCTCCACGTGGTGCACCGAGACCTCAAGCCAGAGAACGTGGTGTTCTTCAGGCAGCAGGGGACCGTCAAGCTGACCGACTTCGGCTTCAGCAACCTCTTCAAGCCCGGGACCATGCTGATGACCAGCTGTGGCTCGCTGGCTTACTCCGCCCCAGAGATCCTGCTGGGAGATGAGTATGATGCTCCGGCTGTAGATATCTGGTCGTTGGGGGTGATCCTGTACATGCTGGTGTGTGGACAGCCCCCTTTCCAGGAGACCAATGACAGTGAGACGCTCACCATGATCATGGACTGTCACTACACCGTCCCAGCCCACGTCTCCTCAGACTGCAAAGAtcTGATCTCCCATATGCTGCAGAGGGATCCATCTAGCCGTGCCTCCCTGCAGGAGATCGAGAACCACCCCTGGCTGCTAGGGGTCGACCCCTCGCCCGCGGGACACAGTGCCGCCCCCCTCACCTCCCACCGTAGCCTGTCCCCAGAGGAACACGAGGTCATCCTCCAGGCCATGACCAGTGGCAACATTGCAGACCGCGACGCCATCCAAGAGGCTCTAGAGGCAGACCGATACAACCACATCACAGCCACGTATTACCTGCTGGGGGAGCGCATCCTGAGAGACAAGCAGGAGCAGCCCAGCGAGATGCCCAAAGTCGACAGCGCATGGGCTGAGCCACCACAACTCCAGAGGCCACTGTCTGAGCCTCTGGATCTGGAGCAGAGGGGGCTCCATGGACTGCTGCCTGGCTGTCCCCGCCGAGGGGTGTCAGAATCTGGGGACTTCCTGGCCCACAGGCCCCTTTTGCTCCAGCCACAGCCAAGTCGCACAGAGAGCCCCTTCCCTGAGTACAGCACAGGGCCCTGCCCGGGGCTCACCCTGCACCCCCCACCCCCTGATGAACCCCTGCAGGTCAAAAGCCTGGGAGCCCTGCAGCTGATCTgtgaagaggatgaggaagaagaagaggaggaggaagaggcaagCAAACCACATGTTGGACTTCATAATATTCAAGCACTGCCTCACATAGTAGGCTTGGTATCAACCACTGGATCTACAGAACAGTCAAGTCCCATGTTCTCAGCTCCAGAGGCTCCACAGAGGCACCCAGTCAGAGTAGTGCCAGGTCAGGGAGAGGAAACAGGCCTGTTGGGCACCTCAGTGAAGGAAGCACTGGACacaaagaggagggagggggacagggaaCAGCAGGACAAGGTTTCCAGCCACAACAAAGATACGGAGTCTGACGAGGTGGCAGCCAGAcaggaacagggtacagtggagTCAGAGGAGAAGCCCATGGAGGAAGAGGATATGTCATGTGACCCACTGAGGCTAGGTAGTCATGCGACTGCAGACCAGCCAATCAATGGTTTAGAAAACCTGATTCAGACAGTGGTAGATAGTCAACTCACTCCGAAAGCTCATCCTCCATGCCTGTCTCGCCTAGGGCGGGTGCAGTGTTGTCGGGGGCAACGAGAGCCTCCTACTCCATACATCATGGAAGGGGAGGAAGACACTATgcttgaaaacaacaacaacaccacagaGTCCAAGTCTAAGCTCCTGGTGCAGGGTGGGTGTTCCACTCCAAGCGCTTCACCTCGCTCTCTGCCACGTAACCACTGTGTGGACCTGGGTCCTGACGGAGTGGAGACGACACGCAAGGTGGGTGGGCCTGGAGGAGAGTCTGAGGGAGAAATGCCGGAGGAGCTCCAGTTGGAGAGATCCCATATTGCACCACAGGGCCCTCTTGGGCTCAGAGAGGCGGGGACCGACCCTGCAGTCAGACTGGATCCTGGGAAGGGGAAGAACGTGAACTTGCGAGACCGCCTACTGCAGTTCCCCCTCTGTGAGAAGGCCTTGTCCTTCAACATCCAGCCCACCTCCAAGGAGAAACTCCTGCCCTTCGCCCAGTACAACTGCTGCCACGTGTTGTAGGCGGGGCCACCTGTAGCTttacctccctatacctcccacATCACTCACTCACTTTATAGCCTGGCCACGGGGCACAAACTAGGGGTCCTCAGGCCCCTCAAGACAGCCTCACACCAGGCCAGAGCCTGTCACCGATCCATCTAGTTCAACACAAAACACCAGAGCAGTCTGGGTCCTGCCTGAACTAGAAGTCTGCATCCTACCTGAACTAGAAGTCTGCAGCCGACCTGAACTGAACTATCTTACTGTGACCTCAGACATTTTGTAGACAATTCTTGTTAGATCTGTGTAGCCCTTACCTCGTTATACTTAGCATCTACTGCTGCTTCCTTTGTGAGAAAATAACTCAACTTATTGTGCTGCCACGTACTGAAGTTTATTAACTGCTTTTTGTGTAGTCTTCTTAGACTATCACTATATAGTATATAGCTTTGCATTGATTGCTATTATAAAATCCCTTATATCGTAGCTCTTCATTTTGCACTAGCTTATCTCGAACTGAGCCCATTTCAGTGTATGGTATGTTGTCACTCTGAGGCCTGCTAGGACAGTGCTATAATTGTAATGTCTAGCATGAAGATGATGCATGCTGTAGAGGGGACAGCTATACTCCCTGCCTCAGCCGCCCGTCTACATTAGCTCAGCTAGCGGAATGATGAAAGGGTTGATGCTATTGACAATGTAGCTGGAAGCATGGTATCATTTAATGCTGGGGGTTGGATACGTCAGTGGCAATCTGAAAGGTGTAAGGTTTGGGACCTAAACTGACTAATGCAGAGAGAGCAAaatctgtgaacaattgttggacagGGTTTAATACAAGAGACTTTTGAAAATGGATATGATATCGACTACGGAAATGCAGGTCTTCCAgattgtttgtgtgtatatgtacttTATTTAAAAATCTTTCATCGTTATTCTTACAAATGCTATTGAACCCTTTTATTTTGTCGGACAACAGTTTCTTTGTCGTAGGACATATCCACAGGTGCGTGATAATAACTATTATTTTGTGGTATCTAAGTGTGACAGAATGAATCAGTCTCGAGAGTGatgacagatactgtacattaaatCCCTGTATTTAAATCCGTATTATTTACCACATATGCCTCAGTGTACTCTGGGCCGTTAAACAAACAAACCGTGGCCCTGCATATTGTTGTTGGACTTGCCTGGGGATTTGTGTATATATGTATTCTGTCTGTCTATGGTTCTGAGAGTACACCTATACATACTATTAAGAGATACCACTTGATCAAATCAGAAATCCTAATCTAGATGCGAACTAGCTATTATGCAAAGAAGAAATCTTATAGAACGAGAGTCCTCAGAAAGCTGTGTTCTTTCTCATCAGTGGAATCCCCAGAGGACTGTATGAGAGCAGAATTAATGGCATACTTTTATCCCCCTCGTTGTGGAAGAGAAGAGTGTAGTGATGGACACAGAGCACTAACTTCAGCTGTCacacattcattcattcaacCAGCTGTCTCCTCCACACCTAGCCTGGAGTCACCTTACCTgggaagtgtctgtctgtctgtcggcccaTTGAACCTGATTTAAACTATGACTATAGGGCTGGATTCAATTTGTAGCGCAGAAGATCAGTGTTGTAGCACGGTTTAAATTTGTAAGTCATtttcgattgagccgacatatgaaGTGTTTACCGCGGAAGCATTGCATTTAAAACGGCAATTTGTGATTGCTAGGtccatttttggacttttaaATTGGTGGTATACCCActcattcttgaagaatataacttataaatgcttagttcaactgttgtaccccatcacaATACATATTTGAACCTTTTACACCtctttgtttgtaaacaaacattgtatagcctccaaacatggttaaaactatcattttaatCTCAGAGCTGGTCAGTCCTTGCACCCATAGTtcagtctatgaatttgagagcgcttacatttctccagccccatccctcctctGTTTACCAAATCAGTGGTGGGTGGCCTTTGTTGTTTGAATGGCAGATTTCACCTTTAAACGCTGATTTTAGGCGCTACGGATTCAATCCAATTCTAGGTCTCAATGagatttctttatttttgtatttatttattaaaatggattaaaccaGA

Function

NR:

description
SNF-related serine/threonine-protein kinase-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568680.2 True 4985 mRNA 0.51 6 66032023 66069982

Neighbor

gene id symbol gene type direction distance location
usb1 usb1 coding downstream 202283 65821657 ~ 65829740 (-)
ccdc135 drc7 coding downstream 239226 65782330 ~ 65792797 (-)
LOC110493917 LOC106560931 coding downstream 253507 65762721 ~ 65778516 (-)
LOC110493906 ca5a coding downstream 279978 65730731 ~ 65752045 (-)
slc7a5 slc7a5 coding downstream 316066 65685261 ~ 65715957 (-)
znrf1 znrf1 coding upstream 14244 66084226 ~ 66118713 (-)
LOC110494064 NA coding upstream 74864 66144846 ~ 66146269 (-)
si:dkeyp-50b9.1 LOC106560918 coding upstream 140454 66210436 ~ 66223350 (-)
LOC110494122 LOC106560915 coding upstream 228206 66277821 ~ 66299637 (-)
LOC110494195 LOC106560909 coding upstream 273648 66343630 ~ 66354538 (-)
G173488 NA non-coding downstream 2323 65999375 ~ 66029700 (-)
G173448 NA non-coding downstream 59966 65951222 ~ 65972057 (-)
G173436 NA non-coding downstream 101259 65930557 ~ 65930764 (-)
G173429 NA non-coding downstream 111764 65919998 ~ 65920259 (-)
G173428 NA non-coding downstream 114622 65915063 ~ 65917401 (-)
G173569 NA non-coding upstream 71621 66141603 ~ 66141803 (-)
G173577 NA non-coding upstream 75622 66145604 ~ 66149000 (-)
G173570 NA non-coding upstream 117664 66187646 ~ 66190766 (-)
G173619 NA non-coding upstream 184824 66254806 ~ 66256962 (-)
G173431 NA other downstream 109794 65921850 ~ 65922229 (-)
G173370 LOC106560927 other downstream 192949 65833341 ~ 65839074 (-)
zcchc14 zcchc14 other downstream 495242 65530911 ~ 65571025 (-)
G173121 NA other downstream 648150 65383437 ~ 65383873 (-)
G172141 NA other downstream 945835 65085572 ~ 65086188 (-)
G173675 NA other upstream 265430 66335412 ~ 66338386 (-)
G173696 LOC106560906 other upstream 305244 66375226 ~ 66390766 (-)
G174505 NA other upstream 622426 66692408 ~ 66692850 (-)
G177487 NA other upstream 3521153 69591135 ~ 69591722 (-)

Expression


Co-expression Network