XLOC_020672


Basic Information

Item Value
gene id XLOC_020672
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 659917 ~ 697504 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042234
AGGGCACTGCTCTGCAGGACAGGTCCCCCATCAGCCTCCTCTTGGTCAGCTCATTGAAGATGACCACCGGCAGGCAGAAGAACAGCACCATGAAGTCCCAGAAGGCCAGGCTGGCCAGCACGCAGTTCCAGGTGCTCTTCAGGTAATAGTTGTGCCACACGATACACATGAGCGCCAGGTTTCCCACGATGCCCACGGAGAACACGATCAGCGCCAGCAGCAGCACGGCGTAGGCGCTGTAGGACTCGTCGGTGACCGGGAACAGCGGGTTGTGGAGGCGCAGCGCGCCGCTGAAGGGCCGCGGGGTGGTGAAGAAAGTGTCCGCCTCCGGGTGCGCTCTCGGCGGCTGCGGCTCCGAGCGCTCCCGCGGTCTGGATTTGGAACCGCGCGGCACTCTCGCGCTCGGTTCTCCGCCTGGATGGAGGCTGCGAGCGCCATCAGGACCAGTAAAGCGCTCAGCATCATGATGGAGCAGAGTTGTGAAGCGGAGGATGGAAATCTGCAGTCTGAGAGGCTCTGAACAAACTCTCAAACTTCTGCTTTCACTTCATCATCCATGAGGAGCGACAGGCGCAAAGCTGCCCCCTGGCGGAGCGCGCACACATGACACAGTGTTCAGCATAAGCTGAGCAACAGCTTCAGACTTCAAGAACTTGAAGACGCCGTCCCTGCGGTCCTCCCACTTCATCAGCCCCTGGTTCTGCTCCGGGTGGATCAGGATATCCCGGATGAACTCCCACAGgtTTCGGTTTGgtgctgtttctgtgtgtttattttgcgTCTCCACACATGGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042234 True 795 lncRNA 0.60 4 659917 697504

Neighbor

gene id symbol gene type direction distance location
XLOC_020671 apobec2a coding downstream 8198 641342 ~ 651719 (-)
XLOC_020670 srsf3b coding downstream 36950 613265 ~ 622967 (-)
XLOC_020669 cdkn1a coding downstream 52105 603382 ~ 607812 (-)
XLOC_020668 tmcc2 coding downstream 59901 591809 ~ 600016 (-)
XLOC_020667 bysl coding downstream 101952 550828 ~ 557965 (-)
XLOC_020673 NA coding upstream 2709 700213 ~ 704907 (-)
XLOC_020674 arl8a coding upstream 13255 710759 ~ 718615 (-)
XLOC_020675 NA coding upstream 35740 733244 ~ 735244 (-)
XLOC_020676 NA coding upstream 41796 739300 ~ 760886 (-)
XLOC_020677 rbbp5 coding upstream 72497 770001 ~ 784110 (-)
XLOC_020664 NA non-coding downstream 264017 392619 ~ 395900 (-)
XLOC_020657 NA non-coding downstream 344537 313710 ~ 315380 (-)
XLOC_020646 NA non-coding downstream 558470 101082 ~ 101447 (-)
XLOC_020641 NA non-coding downstream 623801 27146 ~ 36116 (-)
XLOC_020684 NA non-coding upstream 320841 1018345 ~ 1023531 (-)
XLOC_020686 NA non-coding upstream 458926 1156430 ~ 1168291 (-)

Expression


Co-expression Network