ldhd (ldhd)


Basic Information

Item Value
gene id ldhd
gene name ldhd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66073291 ~ 66084029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568702.2
AGAAGAAGTTTCGACGTCACTACTGTAAACTTCTGATCCGGAAGAATACTTTGTCCATTATGAAATCGCAGGCGACAGCTAAGTGCATTTAGTATACAGTAGtttattataaaaaatatttcACGGGCCGACATTCTGATCTGTGAATATGACCTTCGCCTTGGGACCAACGCGACGCTTGTACGCTCACCTGTCAACGTCTAATTTCGTGCAGTGTCGCACTATCAAGAAAGAACACACTTTAAAAAATGGTGGGTGGGAGCGGGTGATCCCTGCATTCCGCTCGGTGTGTGGTGAAGATGGAGTGTCCCTGGGTGCAGCAGTCAGGGAGCAACATGGCAGAGACGAGTCTGTACACAGATGTCGCCCCCCAGACGTAGTGGTGTGGCCGCGGAGTGTGGAGGAGGTCAGTGCCCTCGCCAAGatctgccaccaccaccaccttcccATCATCCCATTTGGCACAGGCACAGGCCTCGAGGGAGGAGTGGGTGCACTTAAGggcggGGTGTGTTTTAGTCTGAGGAACATGGACAGGGTGTTGGACCTCCATCAGGAGGACTTTGATGTGAGCGTGGAGCCAGGTGTGACACGCAAAGGCCTCAACTCCTACCTGAGAGACACGGGCCTGTGGTTTCCTGTCGACCCTGGTGCAGACGCGTCTCTGTGTGGCATGGCTGCCACCAGTGCATCAGGCACCAATGCGGTGCGCTACGGCACCATGCGGGAGAACGTACTCAACCTAGAGGTGGTGCTGGCAGATGGATCCATCATCCACACAGCAGGCAGGGGGCGCCGGCCCCGGAAGACGTCAGCGGGGTACAACCTGACCAACCTGTTTGTGGGTTCAGAGGGCACTCTGGGAGTGATCACGAAGACCACCCTGCGTCTCTACGGGGTGCCAGAAGCCATGGTGTCTGCTGTGTGCACCTTCCCCTCTGTCCAGGCAGCAGTGGACAGCACTGTGCAGGTCCTCCAGACTGGAGTGCCCATCGCACGCATTGAGTTCCTTGATGATGTGATGATTGACGCCTGTAACAGCTTCAACTCGCTGTCCTACCCCGTGGCCCCCACGCTCTTCCTGGAGTTCCACGGCACTGAGAAGAGTCTGGAGGAGCAGGTTACCGTCACAGAGGAGATCACGCAGGCTAACGGTGGGTCAGACTTTAGCTGGGCACGGGATGCAGAGACCCGCGGGCGCCTGTGGAAGGCACGACACGATGCCTGGTACGCTGCCCTGGCACTCAGACCGGGCTGCAAGGCCTACTCCACAGATGTGTGCGTCCCTCTCTCGCGTCTCCCTCAGATCATTGTGGAAACCAAGGAGGACCTGATGCTAAACGGACTCACAGGTCATGTTGGAGATGGAAATTTCCATTGTATAATGGTCATGGACCCCAATGACCAGGATGAGGTCATTAGAGTTCATGAGTTCACTGAGCGACTGGCCagGAGAGCACTGGCCCTGGACGGGACATGTACGGGGGAGCACGGGGTGGGCCTGGGGAAACGAGCGTTGCTCCGAGAGGAGATGGGACCCCTGGCCATCGAGGTCATGCAGGGCCTCAAAGCCACCCTTGATCCCAAGAACCTCATGAATCCTGGGAAGGTTCTGTAGCTGAAGGTACTGTAGCTATGACCTTATCAGAGCACTGAATCAATGAATGAAGTTTAAAACAATACCTTTGTCTGCCAC
>XM_021568708.2
AAGAAGTTTCGACGTCACTACTGTAAACTTCTGATCCGGAAGAATACTTTGTCCATTATGAAATCGCAGGCGACAGCTAAGTGCATTTAGTATACAGTAGtttattataaaaaatatttcACGGGCCGACATTCTGATCTGTGAATATGACCTTCGCCTTGGGACCAACGCGACGCTTGTACGCTCACCTGTCAACGTCTAATTTCGTGCAGTGTCGCACTATCAAGAAAGAACACACTTTAAAAAATGGTGGGTGGGAGCGGGTGATCCCTGCATTCCGCTCGGTGTGTGGTGAAGATGGAGTGTCCCTGGGTGCAGCAGTCAGGGAGCAACATGGCAGAGACGAGTCTGTACACAGATGTCGCCCCCCAGACGTAGTGGTGTGGCCGCGGAGTGTGGAGGAGGTCAGTGCCCTCGCCAAGatctgccaccaccaccaccttcccATCATCCCATTTGGCACAGGCACAGGCCTCGAGGGAGGAGTGGGTGCACTTAAGggcggGGTGTGTTTTAGTCTGAGGAACATGGACAGGGTGTTGGACCTCCATCAGGAGGACTTTGATGTGAGCGTGGAGCCAGGTGTGACACGCAAAGGCCTCAACTCCTACCTGAGAGACACGGGCCTGTGGTTTCCTGTCGACCCTGGTGCAGACGCGTCTCTGTGTGGCATGGCTGCCACCAGTGCATCAGGCACCAATGCGGTGCGCTACGGCACCATGCGGGAGAACGTACTCAACCTAGAGGTGGTGCTGGCAGATGGATCCATCATCCACACAGCAGGCAGGGGGCGCCGGCCCCGGAAGACGTCAGCGGGGTACAACCTGACCAACCTGTTTGTGGGTTCAGAGGGCACTCTGGGAGTGATCACGAAGACCACCCTGCGTCTCTACGGGGTGCCAGAAGCCATGGTGTCTGCTGTGTGCACCTTCCCCTCTGTCCAGGCAGCAGTGGACAGCACTGTGCAGGTCCTCCAGACTGGAGTGCCCATCGCACGCATTGAGTTCCTTGATGATGTGATGATTGACGCCTGTAACAGCTTCAACTCGCTGTCCTACCCCGTGGCCCCCACGCTCTTCCTGGAGTTCCACGGCACTGAGAAGAGTCTGGAGGAGCAGATCACGCAGGCTAACGGTGGGTCAGACTTTAGCTGGGCACGGGATGCAGAGACCCGCGGGCGCCTGTGGAAGGCACGACACGATGCCTGGTACGCTGCCCTGGCACTCAGACCGGGCTGCAAGGCCTACTCCACAGATGTGTGCGTCCCTCTCTCGCGTCTCCCTCAGATCATTGTGGAAACCAAGGAGGACCTGATGCTAAACGGACTCACAGGTCCGATCGCAGGTCATGTTGGAGATGGAAATTTCCATTGTATAATGGTCATGGACCCCAATGACCAGGATGAGGTCATTAGAGTTCATGAGTTCACTGAGCGACTGGCCagGAGAGCACTGGCCCTGGACGGGACATGTACGGGGGAGCACGGGGTGGGCCTGGGGAAACGAGCGTTGCTCCGAGAGGAGATGGGACCCCTGGCCATCGAGGTCATGCAGGGCCTCAAAGCCACCCTTGATCCCAAGAACCTCATGAATCCTGGGAAGGTTCTGTAGCTGAAGGTACTGTAGCTATGACCTTATCAGAGCACTGAATCAATGAATGAAGTTTAAAACAATACCTTTGTCTGCCACAGGGTGTCAGGAGTTTGGTATTTTATAGAGTAACTGACTGAGTGCCAAGGGCAAATTGTGTTATTTTTGCCTGTCCAGTTCCTCAGAATGAACTGCTGCTAATTTAGATGTTATTAGAATGGAATGGTGGCTTGAAATGATATAATTGCAACAATCCTAATGCAACGTTCTGTGTTTTGTTTCTGTTAAATTGTGTGCCCTGTTgatgtgtacatactg
>XM_021568693.2
AGAAGTTTCGACGTCACTACTGTAAACTTCTGATCCGGAAGAATACTTTGTCCATTATGAAATCGCAGGCGACAGCTAAGTGCATTTAGTATACAGTAGtttattataaaaaatatttcACGGGCCGACATTCTGATCTGTGAATATGACCTTCGCCTTGGGACCAACGCGACGCTTGTACGCTCACCTGTCAACGTCTAATTTCGTGCAGTGTCGCACTATCAAGAAAGAACACACTTTAAAAAATGGTGGGTGGGAGCGGGTGATCCCTGCATTCCGCTCGGTGTGTGGTGAAGATGGAGTGTCCCTGGGTGCAGCAGTCAGGGAGCAACATGGCAGAGACGAGTCTGTACACAGATGTCGCCCCCCAGACGTAGTGGTGTGGCCGCGGAGTGTGGAGGAGGTCAGTGCCCTCGCCAAGatctgccaccaccaccaccttcccATCATCCCATTTGGCACAGGCACAGGCCTCGAGGGAGGAGTGGGTGCACTTAAGggcggGGTGTGTTTTAGTCTGAGGAACATGGACAGGGTGTTGGACCTCCATCAGGAGGACTTTGATGTGAGCGTGGAGCCAGGTGTGACACGCAAAGGCCTCAACTCCTACCTGAGAGACACGGGCCTGTGGTTTCCTGTCGACCCTGGTGCAGACGCGTCTCTGTGTGGCATGGCTGCCACCAGTGCATCAGGCACCAATGCGGTGCGCTACGGCACCATGCGGGAGAACGTACTCAACCTAGAGGTGGTGCTGGCAGATGGATCCATCATCCACACAGCAGGCAGGGGGCGCCGGCCCCGGAAGACGTCAGCGGGGTACAACCTGACCAACCTGTTTGTGGGTTCAGAGGGCACTCTGGGAGTGATCACGAAGACCACCCTGCGTCTCTACGGGGTGCCAGAAGCCATGGTGTCTGCTGTGTGCACCTTCCCCTCTGTCCAGGCAGCAGTGGACAGCACTGTGCAGGTCCTCCAGACTGGAGTGCCCATCGCACGCATTGAGTTCCTTGATGATGTGATGATTGACGCCTGTAACAGCTTCAACTCGCTGTCCTACCCCGTGGCCCCCACGCTCTTCCTGGAGTTCCACGGCACTGAGAAGAGTCTGGAGGAGCAGGTTACCGTCACAGAGGAGATCACGCAGGCTAACGGTGGGTCAGACTTTAGCTGGGCACGGGATGCAGAGACCCGCGGGCGCCTGTGGAAGGCACGACACGATGCCTGGTACGCTGCCCTGGCACTCAGACCGGGCTGCAAGGCCTACTCCACAGATGTGTGCGTCCCTCTCTCGCGTCTCCCTCAGATCATTGTGGAAACCAAGGAGGACCTGATGCTAAACGGACTCACAGGTCCGATCGCAGGTCATGTTGGAGATGGAAATTTCCATTGTATAATGGTCATGGACCCCAATGACCAGGATGAGGTCATTAGAGTTCATGAGTTCACTGAGCGACTGGCCagGAGAGCACTGGCCCTGGACGGGACATGTACGGGGGAGCACGGGGTGGGCCTGGGGAAACGAGCGTTGCTCCGAGAGGAGATGGGACCCCTGGCCATCGAGGTCATGCAGGGCCTCAAAGCCACCCTTGATCCCAAGAACCTCATGAATCCTGGGAAGGTTCTGTAGCTGAAGGTACTGTAGCTATGACCTTATCAGAGCACTGAATCAATGAATGAAGTTTAAAACAATACCTTTGTCTGCCACAGGGTGTCAGGAGTTTGGTATTTTATAGAGTAACTGACTGAGTGCCAAGGGCAAATTGTGTTATTTTTGCCTGTCCAGTTCCTCAGAATGAACTGCTGCTAATTTAGATGTTATTAGAATGGAATGGTGGCTTGAAATGATATAATTGCAACAATCCTAATGCAACGTTCTGTGTTTTGTTTCTGTTAAATTGTGTGCCCTGTTgatgtgtacatactgtattcaaACTGTAATTGGCCGCTTCTCATTGACAATGaagtatttttttaataaaaatccCTCATATTGCCA

Function

symbol description
ldhd Predicted to enable D-lactate dehydrogenase (cytochrome) activity; D-lactate dehydrogenase activity; and flavin adenine dinucleotide binding activity. Involved in lactate catabolic process. Predicted to be active in mitochondrion. Orthologous to human LDHD (lactate dehydrogenase D).

NR:

description
probable D-lactate dehydrogenase, mitochondrial isoform X1

GO: NA

KEGG:

id description
K00102 LDHD, dld; D-lactate dehydrogenase (cytochrome)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568702.2 False 1696 mRNA 0.56 11 66073291 66083738
XM_021568708.2 False 1907 mRNA 0.54 11 66073293 66083957
XM_021568693.2 True 1996 mRNA 0.53 11 66073294 66084029

Neighbor

gene id symbol gene type direction distance location
LOC110494008 LOC106560923 coding upstream 42038 65975745 ~ 66031253 (+)
LOC110494001 LOC106560924 coding upstream 114541 65943159 ~ 65958750 (+)
LOC110493994 fa2h coding upstream 155925 65884793 ~ 65917366 (+)
LOC110493986 csnk2a2 coding upstream 207586 65852505 ~ 65865705 (+)
znf319b LOC106560927 coding upstream 234194 65830115 ~ 65839097 (+)
gins3 gins3 coding downstream 35897 66119926 ~ 66135667 (+)
LOC110494051 LOC106560919 coding downstream 61561 66145590 ~ 66190766 (+)
si:ch211-194m7.8 LOC106560917 coding downstream 123820 66207849 ~ 66210600 (+)
smpd3 LOC106560916 coding downstream 139557 66223586 ~ 66256972 (+)
LOC110494096 LOC106561115 coding downstream 178565 66262594 ~ 66266024 (+)
G172658 NA non-coding upstream 102333 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 143612 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 154073 65918913 ~ 65919218 (+)
G172592 NA non-coding upstream 203023 65869329 ~ 65870268 (+)
LOC110494202 polr2c non-coding downstream 275968 66359803 ~ 66363985 (+)
G173804 NA non-coding downstream 446086 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 446423 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 447637 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 449429 66533458 ~ 66533659 (+)
G172639 NA other upstream 137158 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 432315 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 536504 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2195058 63873248 ~ 63878233 (+)
G170131 NA other upstream 2242971 63820461 ~ 63830320 (+)
G173938 LOC106573687 other downstream 657791 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 871495 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 1154861 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 1402134 67486128 ~ 67488205 (+)

Expression


Co-expression Network