si:ch211-194m7.8 (LOC106560917)


Basic Information

Item Value
gene id si:ch211-194m7.8
gene name LOC106560917
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66207849 ~ 66210600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568771.2
ATATTTTGGTTTAATGGTTTCACATCCTAGTGATGAGCTAGATCTTTCTCAAGCTCTGCATTTACATAGAAAAACCTGCCTTCTACAGCAAAAGTAGTAACATCTGTGGCTGTGtacatctgtgtgtctgtgtgcttaaaAGCCAAAGTCGTTCCTTTTCGTTTCAGTGTGCCGTGGGTACTCTAACACTGACCACCATGCTGTTGCTCCTGTTGCTCCTGACATTGACTAGTAATGGTGATGCCCAGCGTATTCCTGGCTTGAAGAAGGATGACTCATGTTCATgtcaggtcaacagtagtgtctGGGCGTTCCCTGCCAGGAAGTTTGAGGGGGTGCTGCAGCTGGTGCAGGACTGTGGCGACAACCTGCAAAGCCTCCAGGCACAGGTGAAGCTGTCCAACGAGAGGCTTCCTGAGATCCAGGCCATCATTAAGAATGTGACAGCTCGCCTGGAGCCGTACCAGTACCTGAACAACCAGGGTCTGTACACCGCCCTGCACCTGCGTCAGCTAGCTAAGGAACTGAGGGAGCTGGAGGAAGACATCAGTTCTATACACCAAGACAAGCCAAGTGATCAGACTCAGAAACTGACCCAAGAGATAGGTACGGTACGTAAGGAGGTAGATAAGATACATTTGTCAAACACCTTTAACATGAAGACGGTGAAGGAAAAACTCCGCTCGCTGAAGAATGGCGTGGAGTCCTGCAGGACAATCCCAGAGGAGTTCATAAGCAAGCAAGGTGTTTGCTCTCAACGCATCATGTCCAACATCAGTACCCCTGTGATCACAAAGATCAGCCCGTATGGCAAAAGCTATACATCTGGGTCCTGGGGTCGCCAGGCCAAGCAGGTCATGGAAGACCAGGAGGGCAGTGGGGTGTTCTACTGGGTTCAGCCCCTCGTGAACAGCCACAGACTGGGGAACATCGTTCGACGCTACCGCTCCTACGACGACTTCATGGCCTCCAAGAACCACGAGGATGTGTCCGTGGCACCGTCCTACAGCCATGCTAATGCCATCCAGGGCTCCGGCACGGTGGTGTATGGTGAGGCAGTGTTTTATAACTGCTACTACTCCCCTGAGCTGTGCCGCTATGACCTACAAACCAAGGTCACAACTCGTCTGAAGATCCCAGACATCGGTACCAACAACGAGTTtccctactgctactacaactgtaAAGACTGGACAGACACCGACTTTGCTGCTGATGAGACTGGCCTGTGGGTGATCTACAGCACACAGGGTAACCATGGGAACCTGGTGCTGAGCCGGCTAGACAGCGAGGCGTTCAACGTGACACACACTTGGACCACGCGCCTCTTCAAGAAGTCAGTGACTAACGCCTTCATGGTGTGCGGAATACTGTATGCCACCCGTTACATTGACCGGTTCCATGAGGAGGTGTTCTATGCGTTTGACACAGCGACAGGTAAAGACGACAACACCCTGGCTCTTCCCCTGGAGAAGATTGAGAACGGTGTGGCCAGTCTGAGCTACAACCCCATTGACAGGCAGCTCTACATGTACAATGATGGTTACCTTCTGTCTTACCAAGCTATCTTTTAAAGTCAACCTTGTACATGAGGTAGAAACAGTGTATACTGTGCGACAAATCCCACATTTTGCTGTTTTTCTGCGTGTCTTTCTAAACTTGACTTCTTCCTAAAAAATAAAACCACAGCAATGAGCCTCACTTATTTTGATTTTAATAAGAGTGGGTTTTAACTGTGTTGAGGTGCTATAAAACACAATTAACAGACTGAACTGAGCTCTAAATTACTTTATTCAGTCAATCTTTTTTCTCAATGGGGGCATTTCACTTTCCTTTCCCCAAAGCTACTAAGGTAgacatgtaacacacacacacagatgatatGATCTCTCAGTGTAGTCTTGTTGTATCCATAATAGTGCTCTTGTGCCCTGAAAATAAATACATAGAAAATTCCA

Function

NR:

description
olfactomedin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568771.2 True 1958 mRNA 0.48 5 66207849 66210600

Neighbor

gene id symbol gene type direction distance location
LOC110494051 LOC106560919 coding upstream 17083 66145590 ~ 66190766 (+)
gins3 gins3 coding upstream 72182 66119926 ~ 66135667 (+)
ldhd ldhd coding upstream 123820 66073291 ~ 66084029 (+)
LOC110494008 LOC106560923 coding upstream 176596 65975745 ~ 66031253 (+)
LOC110494001 LOC106560924 coding upstream 249099 65943159 ~ 65958750 (+)
smpd3 LOC106560916 coding downstream 12986 66223586 ~ 66256972 (+)
LOC110494096 LOC106561115 coding downstream 51994 66262594 ~ 66266024 (+)
LOC110494104 LOC106560914 coding downstream 56250 66266850 ~ 66298314 (+)
LOC110494127 LOC106560912 coding downstream 95319 66305919 ~ 66332389 (+)
LOC110494179 LOC106573656 coding downstream 123912 66334512 ~ 66338446 (+)
G172658 NA non-coding upstream 236891 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 278170 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 288631 65918913 ~ 65919218 (+)
G172592 NA non-coding upstream 337581 65869329 ~ 65870268 (+)
LOC110494202 polr2c non-coding downstream 149397 66359803 ~ 66363985 (+)
G173804 NA non-coding downstream 319515 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 319852 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 321066 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 322858 66533458 ~ 66533659 (+)
G172639 NA other upstream 271716 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 566873 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 671062 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2329616 63873248 ~ 63878233 (+)
G170131 NA other upstream 2377529 63820461 ~ 63830320 (+)
G173938 LOC106573687 other downstream 531220 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 744924 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 1028290 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 1275563 67486128 ~ 67488205 (+)

Expression


Co-expression Network