smpd3 (LOC106560916)


Basic Information

Item Value
gene id smpd3
gene name LOC106560916
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66223586 ~ 66256972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953530.1
CAGAGTGGTCGTCATGAGAGGCTTCAGGGATTGTCTCTGCCTTTCGATTGGCGGTGATCGTTATGAAAAGGGAGTGGCATCGTAGCCGGTGAGCTATGACGTCAATGGAGCTGTTCAAAGTGTGGTGGTGCTGGAAGGAATCTCACGCAGTTCATCAGCACAGGCTCCGCGGCCATAAAGTGGACTGGATTTGAGAGCATCAAAGGCTATTATCACGGTTTAGAGGGGGAGAATACCGAAGAGAAATAGTGCTCCACCTGTTTGAATAAATCAGCGAGATCTGAAAGAAGTTCTGAAGCTGAGATGGTACTGAGATTCACTTCTTCATAGATCCGCCTTCCTGGTGTCCATGGTTTCCTTCTGACTACAGCAGCTAGTTCCACATCATCAAGATGATCTCCACCCAGAGACTCTAGTTCCTCATTCCTCCATTGGAGGACCACtgtggtgaggggagggggagggtgaaGGAGCCTCCTGCCATCAGGCAAATAGCTGCAGAGCCTGCTGGTGAAAGCGAAGGGAACCATGTAGTGTTCATTTCTCCACCCAGGGGGAGGGTAGATTTGAGTCAAGTTTGTTTTCCATTGATTTTAGTGTGAGAGTGTTTTATGTGAGCCAGAGATGGTCCTCCACACCTCTCCCTACTCCAGTGCCTTCCTGCGGTGCCTCACTAGCCTGTCATGGGGCTTTATATTCCCCTGCTACTGGCTGCTGGACCGCCTGCTAGCCTCCTGTGTGGCCACCTCTCTGGAAAAGCGCCGGCGCTCCCAGGACCCCTGCTCCTTTGTGACGCTGTATGTGCTGGTGTCCACTCCGCTCTACCTGCTGCTCCTCCTGGCCTCGCTGCCCTTCGCTCTGCTGGGCTTCCTGCTGTGGGCTCCCCTGCAAGCGGCCCGCCATCCCTATCTCTACACCCACCGCAGCCCGAACAAGCACCAGGCAGAGCAGGGGGGCGCGGCATCACTGGCCGACTGGAGGCCGCAAGGCCGCAGCTTCTGCTTCGGCAGTGCCAACGTGTGCCTACTGCCAGACTCCCTGGCACGCTTCAACAACCTGTCTGAGACCCAGCGCCGTGCCCGCGAGGTGGGAAAGCGCATCCGTAACGGGGCCAGCCGGCCGCAGATCAAGATATACATCGACTCCCCCACCAACACCTCCATCAGCGCAGTCTCCTTCAGCAGCCTGGTCACGGGGTTCCCACGCACCTCCTCACTGGACCAGCGGCCTGACAACACAGCCGAGGCCGAACCCCTCACTGGGTGCCCTGTACACAATTCTAGTGCAGACTGCCCAATACACACTGCCGGTGCAGACTGCCCCATACCCACCACTGGTGATGACTGCCCCATACACCCAACAGGGAACCAGAGCTCCTCAGATTGTCCCGTCCACGTAGCTGGTGGAGAGAACACACCAGAGTGCCCGCTTCACGCTGCTGGTGCCCATAACAGCTCTGACTGCCCTGTTCACACCACAGTGGCCCAGAACTCCCCAGACTGCCCAATGCACGCCTCTGGGGTCCAGATTAGTATCAGTGCCCCAGAGCCAGACCCCCCAGAGGCCGAGACAGGAAACCACCAAGGCGAGGGTGACGCGGAGAGCCTGACAGGGGGGGTGCCTTCTAACAACATCCTGTCCCACCGCACCTCCATGTTCAAGAAGCACAGCGGCCGCAAGCGGCGCCAAGGAGACGACGGCATCGACCACGAGATCTCTGCCTTCTTCCCTGCCAACCTGGACTTCCTGTGTCTGCAGGAAGTGTTTGACCACCGGGCCACGTCCAGGCTGAGGCGGCAGCTGCAACACTACTTCCCCTATATCCTGAGTGATGTGGGCCGCTACGCCTGGAAGGGCTGCTGCTCCCGCTTCAAGTTCCTCAACAGTGGCGTTATGCTGGTCAGCCGCTACCCCATCCTGGACGCCCACTATGAGTGCTACCCTAACGGGCGAGGGGAAGATGCCCTAGCAGCCAAAGGAGCTCTCTTTGTCAAGGTGCAGGTGGGAACCTCCCATCAGGAGCAGAGAGTTGTGGGATACCTCACCTGCACTCATCTACACGCCATTGAAGGAGATGCAGCTGTGCGTTGTGAGCAGTTGGATCTACTCTTGGAGTGGGGGACGGATTTCCGCAAGGCAACGTCCCGCCCCTCAGAGGAGAAGGGTCTGGAGGACCAGGTGGCCTTTGATGTTGTCCTCGGCGACCTCAATTTTGACAATTGCTCTTCAGAGgataaactggagcagcagcattcCCTCTTCACGCAGTACAAGGACCCGTGTCGCCTGGGGCCAGGGGAGGACAAGCCATGGGCTCTGGGAACACTACTGGACACCAGTGGGCTTTATGACGAGGAGGTCAGTTCACCAGAGAGTTTACAAAAAGTGATGGAgaatgaggaggggaggaaggaataCCTGGTGTTCCCCACCAATAAAAACCACTGTCCTAATCAGAAGGGCAGAAAGATCCCCCTGAAAGGCAACGGGAGGAGGATCGACTACATCCTTTACAGTGAGGCGGTGCAGCAGGACTGGAAAATGGACATTGAAGAGTTTAGCTTCATCACCCAGCTGGCCGGCCTCACTGACCACCTGTCTGTGGCCATGCGTCTGGCTGTGtccacaggagaggaggagccttAGGCCTACACCCTTTATACTGCCACGGAGGAAGAACGGGGACCGAAGAGGCAGAGGGAAGGCAAGGAACTCAGGCCTGAGAAAGACAGAGCTTGAAAAAGGAAAAGAAACGGGTGGACATAACGAAGAAGAAATAAAGGAGCAGATGCAGAGGAGTCATGTGATTCAGAGAgaacctggtggagagagataagagagtgGTTGTTGTGTGTGCCAGAGGTCTGGACCGGGCCCAATGCGGACCTGAGGGACTGAGCCAaagactcacacaaacacacacagtctgaggtTGACTCACACACCGTACCATGTATCACCTCTGGTCCTCGGGGTCTATCAGCTCCCTGATGATGGAGTCACAATGATTGACTTACTATGACTCATTTCCTGTATTTAGATACTTTTATGTTTTTAGGCCTCATTTATGTCTGACCTTTTTCTGTTTTTACCTTTTGGGCTCGGAAGCGTCTAAACGTTGTTCTTTATTTGATTTAAAACGGTGACATGAGACTTCTCTTGACTCATGGAATTTAGAGTGTAGCCTGgcttactgtgtctctgtgttggtgtgtttgttcCTCTCTTACCTTAACCCCAATTCATGGAACCTCGGCATAATGTCTTTTTTTCTAACTCTTTCTAATGGTTTCTATGGTCAACGTACCATCTTTGTAGGGAGTTGAAACACCCACATTTAATACTTTAAATTTATAATGAGGTATTGTATGAAAAATAACATCTGAAAGGGATCTATCTTTTCGGGGCCAATCTGACTGGCATCTCATGTTTCAGTGGTTGTTTGGTTGTTATGCAGAGCTGAGCAGTGAGGAACACGTGATATGATTAGATAAGAGGAACTTAGTTAGGAGGGCCTGGGTGGGGgagcgggggggggggttctgcatGGGGAGTGTAGTGAGGATATCAGATGCAATCCCTCAATAAGAATTTTAATCACAGACTGTTTGGGTTGAAAGCCTGGTCTCCAGGGCAATAAGCATGTTCCCCTGATAATGCAATCTCAAATGCTGCCAATGCAATGAGTCTGCATGAAATGCCACCCTGCCaaaacccacaaacacacacacctgcatactCATTACATACACAGACACCATTGGCACTGATGCCTGCCTCATTTGTGACAACACCTTTTTACTCTCTCACCTGTTCTTATTGACACTGTTGCTATTGCTGGCTGTATCACAGGATGATAAGGGATGTGCGTATGTGTGCAGAACTGGCTTTGGGATATGTGACGACCCCATGTCCCACTTTAGCATGGTGCAGTATTTATAGATCTTATTCCTGGTTGTGGCCACAGCAGAGGCAAAAGTTTACACACCTGCTTACTTGTTTCAGGTCATGGAGGGATCCTGGTCGGTCAGAATATCTCTGTACTTtaatatgtatttactgtatgtatgtactgtatgtatgtactgtatgtatgtactgtatgtatgtactgtatgtatgtactgtatgtatgcccACCTGGCGTTTCTACTCATCTACTATCACCTGGCTGCTTTTATACGCTCTAAAGCCTCTTTATTATtcttattattagtagtattagtagtagtagtattggtagggTTTATATTTGTGCTTTTTTAATACAGTACATGGTCCATCTTGCATTGATCTGTTCCATATTTAGGATGCTGCAGTTCCCTGGTTTAGTTCACAAACTCATAGAGATAACATCTCCCTTGTGCTGGTCTGACTCTCCAGTCCCTCAGCCTCTCCGCGGTTGGGCCTGTTTTTGAGTCAGGGACTGGGGGGGTCAAGGGGCAGGCAGGGGGACTGCTGTAAAGTGTTATGATGATGCTCCATGGCTTCTAGTCTCTCCACAGATAATGCATCACATTGCTATTCTTTTGATTTTGTTCTCTATAATAACTGATGGTCACTGATGGTTTTGTAAAAATCATTTTGTGGGGAATGCTGCTTTGGGGTAGCCTCGTTATCTGAGTGATGTGGCAGGGAATTGGCTCTCTTTTTTTAAGCTTATTCAACAGCTTATTTTcttctgctttaaaaaaaatatatattttccctcTTTGAA
>XM_036953540.1
TGCCCGAGCACAAGTAGTGTGTTCAGAGATCAGAGGCAGAGATCGTCACATTCAGGCCTGGTCATACTGTAGGTTCAGCATCCTGCCGTCTAGCACCACCAGGGGTGGGCTACAGTGATGCACTGGCCTGTCTTCAGCAGGAGTGGACCCAGCAGAGCAAACACTGCAACAAAATAGCAGATTGTTTCAGACAGCAAACACCCTCTCTGTTCTGAAGCTGAGATGGTACTGAGATTCACTTCTTCATAGATCCGCCTTCCTGGTGTCCATGGTTTCCTTCTGACTACAGCAGCTAGTTCCACATCATCAAGATGATCTCCACCCAGAGACTCTAGTTCCTCATTCCTCCATTGGAGGACCACtgtggtgaggggagggggagggtgaaGGAGCCTCCTGCCATCAGGCAAATAGCTGCAGAGCCTGCTGGTGAAAGCGAAGGGAACCATGTAGTGTTCATTTCTCCACCCAGGGGGAGGGTAGATTTGAGTCAAGTTTGTTTTCCATTGATTTTAGTGTGAGAGTGTTTTATGTGAGCCAGAGATGGTCCTCCACACCTCTCCCTACTCCAGTGCCTTCCTGCGGTGCCTCACTAGCCTGTCATGGGGCTTTATATTCCCCTGCTACTGGCTGCTGGACCGCCTGCTAGCCTCCTGTGTGGCCACCTCTCTGGAAAAGCGCCGGCGCTCCCAGGACCCCTGCTCCTTTGTGACGCTGTATGTGCTGGTGTCCACTCCGCTCTACCTGCTGCTCCTCCTGGCCTCGCTGCCCTTCGCTCTGCTGGGCTTCCTGCTGTGGGCTCCCCTGCAAGCGGCCCGCCATCCCTATCTCTACACCCACCGCAGCCCGAACAAGCACCAGGCAGAGCAGGGGGGCGCGGCATCACTGGCCGACTGGAGGCCGCAAGGCCGCAGCTTCTGCTTCGGCAGTGCCAACGTGTGCCTACTGCCAGACTCCCTGGCACGCTTCAACAACCTGTCTGAGACCCAGCGCCGTGCCCGCGAGGTGGGAAAGCGCATCCGTAACGGGGCCAGCCGGCCGCAGATCAAGATATACATCGACTCCCCCACCAACACCTCCATCAGCGCAGTCTCCTTCAGCAGCCTGGTCACGGGGTTCCCACGCACCTCCTCACTGGACCAGCGGCCTGACAACACAGCCGAGGCCGAACCCCTCACTGGGTGCCCTGTACACAATTCTAGTGCAGACTGCCCAATACACACTGCCGGTGCAGACTGCCCCATACCCACCACTGGTGATGACTGCCCCATACACCCAACAGGGAACCAGAGCTCCTCAGATTGTCCCGTCCACGTAGCTGGTGGAGAGAACACACCAGAGTGCCCGCTTCACGCTGCTGGTGCCCATAACAGCTCTGACTGCCCTGTTCACACCACAGTGGCCCAGAACTCCCCAGACTGCCCAATGCACGCCTCTGGGGTCCAGATTAGTATCAGTGCCCCAGAGCCAGACCCCCCAGAGGCCGAGACAGGAAACCACCAAGGCGAGGGTGACGCGGAGAGCCTGACAGGGGGGGTGCCTTCTAACAACATCCTGTCCCACCGCACCTCCATGTTCAAGAAGCACAGCGGCCGCAAGCGGCGCCAAGGAGACGACGGCATCGACCACGAGATCTCTGCCTTCTTCCCTGCCAACCTGGACTTCCTGTGTCTGCAGGAAGTGTTTGACCACCGGGCCACGTCCAGGCTGAGGCGGCAGCTGCAACACTACTTCCCCTATATCCTGAGTGATGTGGGCCGCTACGCCTGGAAGGGCTGCTGCTCCCGCTTCAAGTTCCTCAACAGTGGCGTTATGCTGGTCAGCCGCTACCCCATCCTGGACGCCCACTATGAGTGCTACCCTAACGGGCGAGGGGAAGATGCCCTAGCAGCCAAAGGAGCTCTCTTTGTCAAGGTGCAGGTGGGAACCTCCCATCAGGAGCAGAGAGTTGTGGGATACCTCACCTGCACTCATCTACACGCCATTGAAGGAGATGCAGCTGTGCGTTGTGAGCAGTTGGATCTACTCTTGGAGTGGGGGACGGATTTCCGCAAGGCAACGTCCCGCCCCTCAGAGGAGAAGGGTCTGGAGGACCAGGTGGCCTTTGATGTTGTCCTCGGCGACCTCAATTTTGACAATTGCTCTTCAGAGgataaactggagcagcagcattcCCTCTTCACGCAGTACAAGGACCCGTGTCGCCTGGGGCCAGGGGAGGACAAGCCATGGGCTCTGGGAACACTACTGGACACCAGTGGGCTTTATGACGAGGAGGTCAGTTCACCAGAGAGTTTACAAAAAGTGATGGAgaatgaggaggggaggaaggaataCCTGGTGTTCCCCACCAATAAAAACCACTGTCCTAATCAGAAGGGCAGAAAGATCCCCCTGAAAGGCAACGGGAGGAGGATCGACTACATCCTTTACAGTGAGGCGGTGCAGCAGGACTGGAAAATGGACATTGAAGAGTTTAGCTTCATCACCCAGCTGGCCGGCCTCACTGACCACCTGTCTGTGGCCATGCGTCTGGCTGTGtccacaggagaggaggagccttAGGCCTACACCCTTTATACTGCCACGGAGGAAGAACGGGGACCGAAGAGGCAGAGGGAAGGCAAGGAACTCAGGCCTGAGAAAGACAGAGCTTGAAAAAGGAAAAGAAACGGGTGGACATAACGAAGAAGAAATAAAGGAGCAGATGCAGAGGAGTCATGTGATTCAGAGAgaacctggtggagagagataagagagtgGTTGTTGTGTGTGCCAGAGGTCTGGACCGGGCCCAATGCGGACCTGAGGGACTGAGCCAaagactcacacaaacacacacagtctgaggtTGACTCACACACCGTACCATGTATCACCTCTGGTCCTCGGGGTCTATCAGCTCCCTGATGATGGAGTCACAATGATTGACTTACTATGACTCATTTCCTGTATTTAGATACTTTTATGTTTTTAGGCCTCATTTATGTCTGACCTTTTTCTGTTTTTACCTTTTGGGCTCGGAAGCGTCTAAACGTTGTTCTTTATTTGATTTAAAACGGTGACATGAGACTTCTCTTGACTCATGGAATTTAGAGTGTAGCCTGgcttactgtgtctctgtgttggtgtgtttgttcCTCTCTTACCTTAACCCCAATTCATGGAACCTCGGCATAATGTCTTTTTTTCTAACTCTTTCTAATGGTTTCTATGGTCAACGTACCATCTTTGTAGGGAGTTGAAACACCCACATTTAATACTTTAAATTTATAATGAGGTATTGTATGAAAAATAACATCTGAAAGGGATCTATCTTTTCGGGGCCAATCTGACTGGCATCTCATGTTTCAGTGGTTGTTTGGTTGTTATGCAGAGCTGAGCAGTGAGGAACACGTGATATGATTAGATAAGAGGAACTTAGTTAGGAGGGCCTGGGTGGGGgagcgggggggggggttctgcatGGGGAGTGTAGTGAGGATATCAGATGCAATCCCTCAATAAGAATTTTAATCACAGACTGTTTGGGTTGAAAGCCTGGTCTCCAGGGCAATAAGCATGTTCCCCTGATAATGCAATCTCAAATGCTGCCAATGCAATGAGTCTGCATGAAATGCCACCCTGCCaaaacccacaaacacacacacctgcatactCATTACATACACAGACACCATTGGCACTGATGCCTGCCTCATTTGTGACAACACCTTTTTACTCTCTCACCTGTTCTTATTGACACTGTTGCTATTGCTGGCTGTATCACAGGATGATAAGGGATGTGCGTATGTGTGCAGAACTGGCTTTGGGATATGTGACGACCCCATGTCCCACTTTAGCATGGTGCAGTATTTATAGATCTTATTCCTGGTTGTGGCCACAGCAGAGGCAAAAGTTTACACACCTGCTTACTTGTTTCAGGTCATGGAGGGATCCTGGTCGGTCAGAATATCTCTGTACTTtaatatgtatttactgtatgtatgtactgtatgtatgtactgtatgtatgtactgtatgtatgtactgtatgtatgtactgtatgtatgcccACCTGGCGTTTCTACTCATCTACTATCACCTGGCTGCTTTTATACGCTCTAAAGCCTCTTTATTATtcttattattagtagtattagtagtagtagtattggtagggTTTATATTTGTGCTTTTTTAATACAGTACATGGTCCATCTTGCATTGATCTGTTCCATATTTAGGATGCTGCAGTTCCCTGGTTTAGTTCACAAACTCATAGAGATAACATCTCCCTTGTGCTGGTCTGACTCTCCAGTCCCTCAGCCTCTCCGCGGTTGGGCCTGTTTTTGAGTCAGGGACTGGGGGGGTCAAGGGGCAGGCAGGGGGACTGCTGTAAAGTGTTATGATGATGCTCCATGGCTTCTAGTCTCTCCACAGATAATGCATCACATTGCTATTCTTTTGATTTTGTTCTCTATAATAACTGATGGTCACTGATGGTTTTGTAAAAATCATTTTGTGGGGAATGCTGCTTTGGGGTAGCCTCGTTATCTGAGTGATGTGGCAGGGAATTGGCTCTCTTTTTTTAAGCTTATTCAACAGCTTATTTTcttctgctttaaaaaaaatatatattttccctcTTTGAA

Function

NR:

description
sphingomyelin phosphodiesterase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953530.1 False 4717 mRNA 0.51 8 66223586 66256972
XM_036953540.1 True 4636 mRNA 0.51 8 66235111 66256972

Neighbor

gene id symbol gene type direction distance location
si:ch211-194m7.8 LOC106560917 coding upstream 12986 66207849 ~ 66210600 (+)
LOC110494051 LOC106560919 coding upstream 32820 66145590 ~ 66190766 (+)
gins3 gins3 coding upstream 87919 66119926 ~ 66135667 (+)
ldhd ldhd coding upstream 139557 66073291 ~ 66084029 (+)
LOC110494008 LOC106560923 coding upstream 192333 65975745 ~ 66031253 (+)
LOC110494096 LOC106561115 coding downstream 5622 66262594 ~ 66266024 (+)
LOC110494104 LOC106560914 coding downstream 9878 66266850 ~ 66298314 (+)
LOC110494127 LOC106560912 coding downstream 48947 66305919 ~ 66332389 (+)
LOC110494179 LOC106573656 coding downstream 77540 66334512 ~ 66338446 (+)
LOC118937288 LOC106560946 coding downstream 81899 66338871 ~ 66340622 (+)
G172658 NA non-coding upstream 252628 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 293907 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 304368 65918913 ~ 65919218 (+)
G172592 NA non-coding upstream 353318 65869329 ~ 65870268 (+)
LOC110494202 polr2c non-coding downstream 103025 66359803 ~ 66363985 (+)
G173804 NA non-coding downstream 273143 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 273480 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 274694 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 276486 66533458 ~ 66533659 (+)
G172639 NA other upstream 287453 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 582610 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 686799 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2345353 63873248 ~ 63878233 (+)
G170131 NA other upstream 2393266 63820461 ~ 63830320 (+)
G173938 LOC106573687 other downstream 484848 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 698552 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 981918 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 1229191 67486128 ~ 67488205 (+)

Expression


Co-expression Network