XLOC_020673


Basic Information

Item Value
gene id XLOC_020673
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 700213 ~ 704907 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042235
CAGGAACAATATGGTCCTTATGGGCCCCCACGACTCCTCCTGAGAATCTACTGTAGGAGGAAAATCCCTTCGCTCAGACGAGCAGGTCACATAAGTACAAATCCTTAATTGTGTTTGTGTGGAAAAGAGAGAGAGCCTTGCGAAGTTTCTGCGACTTTTCTTTTATTGTCTGCAACCAagtacaaaaacatacaaaagatTCGATGCTAACAATCTGTTTAGCTAATATAatactgtctatctatctatcatgttaAAGTAGTGAAAGAGCATTTCCCCTAGTCCAGTCATTTATCTCTGCTGAGTTTGTAAACAAACACAACACGTTTAATTCCAGCAGAGAATCAGTCTTTAACAAAATAATCCTGATGATGTTTTatccctacactctcagaaataaagCATCTGCATAAGAATAACGATCTGCAAAGCTGATTTTCATCTTGAACACTGactcttaaaacaagacagtttaaaaattaagtgcataaaaaaatatgctttCAAGTTTGCCAAAAGTGTCCATCCAgcaatacagtatatttatactCGACATTAGCTGTTAATTCCTACAAAATAAAAACTGGTTACAATCTACATGCGTGTCTGTAGTGTAGAACAGGGGAAACACCGACTGAACTACAGCAGATGTTGAGGATTCTACACCAATAAACCTTATCGAGAGGAAGCAGGATTCTGATTGGCCGTAGACAAAGAGGAAATTGTTTCTATACTTCCCGCTCATAATCCAGCAGAGAGAGAGATAAGGGgccgttcacacagaatgcatttttTCTTTCCAATACACCAGTGCTCCTCAATGTTTTTATCACCGCGGactggtcaacgcttgacaattttaccgtgGACCAGGGGGTGGGTGGTTCATAGGCGACCATCaatcattttctcagaggatgacaatcTGATAAAGCACTgttgtcactctgatacaagtttcacttatggagaaaattacaaagcgcTGCAGTCTTTggctgttctgtgtttgtctgagatgtttagtctaccgaaatgtgaatATCCCATACAAGCTGAAGCGGATCTCttagttcttgtcacatgactcgcgGTGCGCTCGCGGCATTCAATCAACTGGGGGCGTCTGGAAGGCGCAAGTGCATCACACCTCTTGCATGCGCAAGCCGTACACCTCCATTGGAATTAATAAACTTGcacgaactctagaaaagacgtgatatgctAACAGCTCCTAAAAGGCcaccgtcatttgcgatctccagcaggtGATCTTCTAGCACAGatatgctggattcacctgattagTTGACAAAAGCGTTAAGGATCCATTGCTTGGCAGTTAATGAGTCCTTCATTGGGCCTTTACCccatttgcaaagaaactttacAACAACGTcggtttcttactcattttgctgcttgtgggttaaatttttgGCGCTCAAGTGGCtgagatgtaagcgagagaaataaaagacttttcaaaataaaagatggttcagactcggataataaataaaagggaaataattaatgttttcttttgCGGCTCAGTACCAGTTGATCCACAGACCGGTAGAACtacttttacattgtttttctatgtaatCACTCTTGATAAgtcgtgtgtgtgagtgttatgCTTGCTTCTTCTGCACATGAGCACTGCATATTTACCACACCGTGTaagattaatttacatttttacatgcgAAATAGTTCATCAAtatcagttccaaagcagtgggccaatcagaagagcgGGGCAAATGTTGCGAACTTATGTGTACAGTAGCaagttggcatgacaaatgtttaaTTTGATGGGAACATACGCAAGTTTTTTGTGTGCTCTGTCCTCTTAAGAGTGTTGGCAACTGAATGATACTTTACCGTTTTCGtatgtcagttccaaagcagtggaccaatcagaagagcttagAGGTGGGGCAAGTGTTTCAAACTAATGTTTACAGTATCAAGTTGCCATGACAACTGTTTAATTTGATGGAAAAATTGGtgaaatttttgtgtgaactgtccttttaagagTGTTAGCAACTAAATGATATTTCATAGTTTTCGTATGTCTGTTCCAATGCATGGACCAATCAACAGAGCTGAGAGGCTTGTCAAATGTTGCAAACTTATGTTTACAGTGGAAAGTTGCCATTACAACTGTTTAATTTGAAGGTAAAATGGGTGAAATTTTTGTGTGCACTGGCCCTTTAAGACGAAAACGAAACTTCACCATTTTTGtatgtcagttccaaagcagtggaccaatcagaagagctcagAGGAGTGGCAAATGTTGTGAACTTCTGTTAACAGTACAAAGTTGGTATGATAACTATTTAATTCAATGGTAGCATGGGCAAAATTTTTGTGTGCACTATCTCTTTAAGAATGTTAGCGACTGGACGATCCTTAACAGTTTCCGTATGTCAGTTCCAATGCATGGACCAATCAACAGAGCTTAGAAGCTGGGAAAATGTTGCGAACTTATGTTTACAGTAATAAGTTGGCATGACAACTGTTAAATTTGATGGTAACATAGGCAAAATTTTTGTGTGCACTGTTCCTTTAAGAGTGATAGCGACTGAACGATACTTCACAGTTTTGTATGCCAGTTCCAAAGCAGAGGACCAATCAGAAGCGCTCAGAGGCGGGGCAAGTGTTGCAAACTTATGTTTACAGTAGCAAGTTGCCATGACAACTGTTTAATTTGATGGTAACAATTCTTTTTTGAAACTATTCCTGAGTGCTTCATCTCACATTTTAGACGCACTCTGTGTGAATGGTCGTTTGtatattacacattttaatgTTTCGTTTATCTGATTTGTTGAACAAAATTTGCTGGAATGACTTCAACAAGCATTTTTTGTGTGCACTGTCCCTTTAGGGTGCATTGTAAACCTAGAAttttgtttgggaacctgtctcgtttgcccagttagcgcagttagTTTGGCAATTGTGAATCCACCAATCGTGCTCGGATCCGCACCAAAACAATCCGAGATCAAAacagtccgagatcgcctgaatgaggtggtcagGGCTCGATTGAAAAgaactctggagtggatcgattgtagtgagaaagctaTACGATTCGAGCCCGGCtacatcacagtgttttatggatatgtaataggcatacggctatatgaagagagaattatgagtaaggcaggaggtcattccagacatcccaagtctcccggaagttccagGAGTCTCCCGCGAATGCACAAAGACTCCCAGTTGCCTGCAGTTTTCGTATGTCAGTTCCAATGCATGGGCCAATCAGAAGCTGTCAGAGGCGGGGCAAGTGTTGTGAACTCCTGTAAACGGTAGTTTGattgtaaaaatacatttttaaaaccaatCCTGAGCGCTGCGTCTCACATATTATGATGTATTCTGTGCGAACGGCCCCGTAAATTTTGTATATCTGATTACACATTTATTCGTCCATAGAAAAAACAACATGTTTTGTTCCCTTTAAGAGTGTTAGCGACTGAACGATACTTCACAGTTTTCGTAAATATGTCTGAGTCAAGATCAACACGGCGTACCGATGATCAGCTCAGCTGGACTCTCCTTAACCTTATCGAAAAACACGGCCGGCGATGTCCCAGACACGATCTTGAGCTTGTCCTCTTGCATGGAGACGGGCGAGGCCGGCGGCGAGGACACGGCGGTGGCATTGGTGGACACAGACGAGGTCGTACAGGAGGACGAGGGATCTGAAAAACACTCctcgcagcagcagcagcagcagtccaTGAACGCCTGACCTAGAGACCGACAGATGCACAGCAGCACAACCGGCGTCGCTCCGGCACGCACAAACAAcaaaaactgaccaatcagagccagCAGAGCCTGTGTGGCCACACCCACATCCACGCCCACATACGCCAGCACGATATTCCAGATGTATTCCGGCAAACTACATATCGCGTAGATGAACGCCAGCGCCACTACCGTTCGAGTCAGCTGACGCTCTCTTCTTCGTTTTTTTATCGATGATGAAGAGGacgatgatgatgttgatgatgaacGTAGGGTTTTTTCATCCTCGCTGACGTGTCGAGTGAGTAGATGACAGGCACCTGTGAACAGCAGCGGCAGGCAGAAATAGCAGCCGAACGTCCACCACATGCGGGCGTGTTGGTAGGTGAGCACCAGCGAGAGCAGTGCGTCAGGCAGATCCGCGGACGGCTGTGGGCGACAGGCGTCCACTGGGAGACCTGACTGCGGAGACCCGTCCTGCTCCAGACGCCACAGCAGCAGCTCCGGCGCCGCCAGCAGCAATGAGCCCAGCCAGATCACAGACAGCTTGGCCAGGATTGACTGACAGGACTCGCCCTGCCGCGGCCTCGACTGACCGCTGGTCACCGTGTGGAAGCGGTCGATGCTGAGCGCACACAGAGTAAACGTGGTCACGCCCA

Function

GO:

id name namespace
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0030234 enzyme regulator activity molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042235 True 4469 lncRNA 0.44 2 700213 704907

Neighbor

gene id symbol gene type direction distance location
XLOC_020672 NA coding downstream 2709 659917 ~ 697504 (-)
XLOC_020671 apobec2a coding downstream 48494 641342 ~ 651719 (-)
XLOC_020670 srsf3b coding downstream 77246 613265 ~ 622967 (-)
XLOC_020669 cdkn1a coding downstream 92401 603382 ~ 607812 (-)
XLOC_020668 tmcc2 coding downstream 100197 591809 ~ 600016 (-)
XLOC_020674 arl8a coding upstream 5852 710759 ~ 718615 (-)
XLOC_020675 NA coding upstream 28337 733244 ~ 735244 (-)
XLOC_020676 NA coding upstream 34393 739300 ~ 760886 (-)
XLOC_020677 rbbp5 coding upstream 65094 770001 ~ 784110 (-)
XLOC_020678 TMEM263 coding upstream 107941 812848 ~ 817479 (-)
XLOC_020664 NA non-coding downstream 304313 392619 ~ 395900 (-)
XLOC_020657 NA non-coding downstream 384833 313710 ~ 315380 (-)
XLOC_020646 NA non-coding downstream 598766 101082 ~ 101447 (-)
XLOC_020641 NA non-coding downstream 664097 27146 ~ 36116 (-)
XLOC_020684 NA non-coding upstream 313438 1018345 ~ 1023531 (-)
XLOC_020686 NA non-coding upstream 451523 1156430 ~ 1168291 (-)
XLOC_020687 NA non-coding upstream 477177 1182084 ~ 1182479 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G681242 NA non-coding CI01180000 null 5662188 ~ 5666144 (+)