LOC110494122 (LOC106560915)


Basic Information

Item Value
gene id LOC110494122
gene name LOC106560915
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66277821 ~ 66299637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568881.2
AAGACTACAGCCATTGATCAGTAGTGGTTAACTTGGCAAACTATGGGGGCGTAGGGACATTTTGAGATTATAATGGTAGTGTGTAATGGCACCTACTCTACAAAATATTAATATAACTCTGGAAGTTCCATTATGCATCTGGACAGTATTTATATGGGGAGATGTAACTCTTACGGACTCAGACTAAAGAGGGACCAAGACAACAGGGCAAAAGCCAGACCTTCGACACATCTCAAACCATCATGAAGACTACCTGCTTGGCTCTTGGGTTATTGCTGCTGACAGTGTTCCATTCCTATGCTACCCCTCTTGGACTGCAAACATCACCAGAAAGCTGCTGTTTCCGCTTCCTCAAAGTGAGTGTCCCCCACAAAAAGATTGTCTCAATCCAGAAGACTCACAGTGGCTGCCCCCTACCAGCATTTGTGGTCAAAACTGTCAAGGGGAAATTGATTTGCTTCCAGTCGAGTGAGCGGTGGGTACAGAAAGCCTTCAACCGGCTCAAATAGCCAGCAGCTGTGGCCACATGTAGAGGCATTGAGAGTTCCAGTCATCCTTGACAACCTCCTCATCATCATGACTCAAGCCTCACCAGCTCCATGAAGACTACTCTATCCTCGACATACAAGCAGAGACAGAGTTTTAATGTAGCTCACTGGATGGCACCAAACGGTTGGTTATCATCTTACCCCATGTTTCACTGTATATGTTCACTTTACTATAAAAACTTTCAGAACTATTTCCTATAACACTTAACAATAAGGGACATGTTTATCACTTTGAAATGCAGCAATAACTATTTTGCAATATATGGAATTGATATGAGTTAAGATGCACATGCACGTTATTGTGttttaatgtactgtatgtgagaatcCACTGCTTTAATAAAAGGAGAGGAAACATTTCACTTAAGCATAACCTTCTCATCTTTAATATTAATAATGTACAGTTAGAGAGAACAGATGATAATAAAATGAAGAACAGAATAAAGCTGAAGAGTGtagatatatataaaaaataaaaataaaaaaacaa
>TU197458
TTAAGCATAACCTTCTCATCTTTAATATTAATAATGTACAGTTAGAGAGAACAGATGATAATAAAATGAAGAACAGAATAAAGCTGAAGAGTGtagatatatataaaaaataaaaataaaaaaacaactccTAAAGTTATGGCTACCTTCAACATTATTAGATAGGGGAGTGGTTAAAGAATGATTTAGGAAAAGTTTGTCTCAGACCTTAGCTCAAATGAGCCTTTAAGACTTCTCAGACCACGGACTAACTTCTGACTATTACAACTCAGAGACCTGCAACAAGAGACTGGTCCTGAGAAAGCATACAGTTGGCATAGagtattattgtgtgtgtgagtgtggcttGTGAAGGCAGTGTAGGTTGGGTCAGAGGTTGTCTTCTGGGATTTGGGGCTTGTGTTCAGTTGTGAAGTATATAACAATTTACAGTCAATTTCATGATGTATGTGAACCAGAAGAAAATGACAGTTTTTTAAAATATGTGTGTTGTATTTATCTGTGCATTTTCTGTGTCCCTTTTGCATGTCTTCAAGTGCATCTTAAGATTTCTAGAGGTTTGTAAAAATCAAGACTACACTAAAATAATAATTGTTGAACCACTTAAATGATCCTACTGGATTCAAGGGATTGTTGTCCAACCATACATACATAATATATTCAATGCATTTAGCGCTCTCGGTACAGTCTTCAGAACAGGGGACAAGGGATTGATAGGGCTTTAGGTTTAGGTCTTTGACAAAATCCATCACTTCACAATATAAGACATTGCCATAATCACGGTTATCATTGTTTTAGACACCCATATGATTTGTGTAACATTATCTATATAATAGGGACATAATTATCTGCTTCAGTATCCAGAGAATGTTATGACACTGACAATGTTACTGTTTATACCGTTAAGTGTGTCTTCTATTAGTAAAATAGAAGACACAAACACATGGTTTAcaggcacgtgcacacacacaggcacccacacacaagtacacacacatttAAGTGTTTACATATGTCACAATGGAGTGTGCTTGTGAATGGTCTTGAGCTGCCtctgctggaagaaacaggtgaGCTAGCTAGAGAACAGATTGTAGTACACTAGTATAAAGGATGGCTATGCATGATGCCTGCCATGTGTAAAACTCCAAAGATCAGAGGGAAATAATTTCCTCCTTGTCAGGAATAGAAATAAAAGGTTTTGGCAGACCCCCAAAAGAGGGAtgtggctatgtgtgtgtgtatagtggtgcaTGAGTGTGACATTGGGGCGTGTTGTTGTATGTACTGAATGAGATGCATGTGAGGTCCATGTATGACCTAAATAGTACAATAGGGTCAGCACGCCCACTTTAGAAAGTGCAAGCGTAAACACCCTCTTAGCCCTGAGCTAAGTGCAGTGTGAACGCGGCttatttgcgtgtgtgtgtgtgtatatatatatggtttGAGGGTCATAGATTGTGTGAACATCAAAAAGGATGTAAAAACAAGTTTGCAATATTTAATTGGAGGAATAGGTTCAACTTAAAATATTTTTCCCTTCTTTTTGTTCTTTTCCCTTCTCCTTGACCTTCATCTCAAACACCTGCTCCATCTCTGTTTCCATCTTCTTCATCTTCATGACATGTTCCCTCCGCTCCTCCTCCATTGCAAGTTACGGCAGCAAGCTTTTTGCTGCGGTAGTTCTCATAGTGGACGTTGTTGGTCACATCCTTCAGATCTTGCATATGGGTCctGATCAGCATGTTCCGTAACACAGTGAAGTCACAGTGCTCCCCGTTCTCCACTTCTGCCACGCCCCAGGGGTACTGACGACCTCTGACCTTCTTGCCGTTCACTTCAATCACCACGTTGCTGCCAACCACTGCCAGAGGCATCCGCTCCTTGATCTTCCGGATGAGCTTGCTGTCCTCATCGTCCTCGGTGTCAGGAAACTCATAGATTCTGATCTTGTGTTCTTGGATTTCCTTCATGATctgtttCTTGAACAGCTGGCATTCTTCAGGTGTCAGAGTGTCTGCCTTGGCGATTAGAGGGATCACGTTGACCTTGTCATGGAGACGCTTCATGAACTCAATGTCCAGGGGCTTCAGCCTTCCGTGGCCAGAGGGGGCGATGAAGTACAGGCAGCAGTGAACTCTGTTGTCTGGCATCAGTCGTCGGTTCACCCTGGACTCTGCATTCAGGAAGTCCTCACACTTACTGTCAATGAAGTTAATGACAGGCTGCCAGCAGTTACTATTGTCCACTGCATCTCCAAACCCTGGCGTATCGACGATGGTGAGAGTGAGCTGGACACCCCCTTCCTTCACCAGAACCTTGGACTGCTCCACctGCACAGTCTTCTTGATCCGTAGGGATGGGCCAGGGTAATCCTTGGAGTACAGGTCAGTCAGGAAGAGGGAGTTGATGAGCGTGGATTTCCCCAATCCAGACTCACAACAACCATTAGTGTGAACTCAAAGCCCCTCTTCACTGACTTCCTGTACACTTGGTTGGGGAGGTTGGCGAACCCCACATACCCCTCCAGATTCCTAAGTCGTATCATATCCATCATATCCATCATCTGAGAGACGTCGTCATGGAGATAGTGGATCTCACACCAGATGACAGCCAACGCGTTCCCAAGTTGTGTGTTCTCCTTCTCTTGAGTACCGTatttctccattcctccctctgcctgctctaatctcatcctctctctctccca
>TU197457
TTAAGCATAACCTTCTCATCTTTAATATTAATAATGTACAGTTAGAGAGAACAGATGATAATAAAATGAAGAACAGAATAAAGCTGAAGAGTGtagatatatataaaaaataaaaataaaaaaacaactccTAAAGTTATGGCTACCTTCAACATTATTAGATAGGGGAGTGGTTAAAGAATGATTTAGGAAAAGTTTGTCTCAGACCTTAGCTCAAATGAGCCTTTAAGACTTCTCAGACCACGGACTAACTTCTGACTATTACAACTCAGAGACCTGCAACAAGAGACTGGTCCTGAGAAAGCATACAGTTGGCATAGagtattattgtgtgtgtgagtgtggcttGTGAAGGCAGTGTAGGTTGGGTCAGAGGTTGTCTTCTGGGATTTGGGGCTTGTGTTCAGTTGTGAAGTATATAACAATTTACAGTCAATTTCATGATGTATGTGAACCAGAAGAAAATGACAGTTTTTTAAAATATGTGTGTTGTATTTATCTGTGCATTTTCTGTGTCCCTTTTGCATGTCTTCAAGTGCATCTTAAGATTTCTAGAGGTTTGTAAAAATCAAGACTACACTAAAATAATAATTGTTGAACCACTTAAATGATCCTACTGGATTCAAGGGATTGTTGTCCAACCATACATACATAATATATTCAATGCATTTAGCGCTCTCGGTACAGTCTTCAGAACAGGGGACAAGGGATTGATAGGGCTTTAGGTTTAGGTCTTTGACAAAATCCATCACTTCACAATATAAGACATTGCCATAATCACGGTTATCATTGTTTTAGACACCCATATGATTTGTGTAACATTATCTATATAATAGGGACATAATTATCTGCTTCAGTATCCAGAGAATGTTATGACACTGACAATGTTACTGTTTATACCGTTAAGTGTGTCTTCTATTAGTAAAATAGAAGACACAAACACATGGTTTAcaggcacgtgcacacacacaggcacccacacacaagtacacacacatttAAGTGTTTACATATGTCACAATGGAGTGTGCTTGTGAATGGTCTTGAGCTGCCtctgctggaagaaacaggtgaGCTAGCTAGAGAACAGATTGTAGTACACTAGTATAAAGGATGGCTATGCATGATGCCTGCCATGTGTAAAACTCCAAAGATCAGAGGGAAATAATTTCCTCCTTGTCAGGAATAGAAATAAAAGGTTTTGGCAGACCCCCAAAAGAGGGAtgtggctatgtgtgtgtgtatagtggtgcaTGAGTGTGACATTGGGGCGTGTTGTTGTATGTACTGAATGAGATGCATGTGAGGTCCATGTATGACCTAAATAGTACAATAGGGTCAGCACGCCCACTTTAGAAAGTGCAAGCGTAAACACCCTCTTAGCCCTGAGCTAAGTGCAGTGTGAACGCGGCttatttgcgtgtgtgtgtgtgtatatatatatggtttGAGGGTCATAGATTGTGTGAACATCAAAAAGGATGTAAAAACAAGTTTGCAATATTTAATTGGAGGAATAGGTTCAACTTAAAATATTTTTCCCTTCTTTTTGTTCTTTTCCCTTCTCCTTGACCTTCATCTCAAACACCTGCTCCATCTCTGTTTCCATCTTCTTCATCTTCATGACATGTTCCCTCCGCTCCTCCTCCATTGCAAGTTACGGCAGCAAGCTTTTTGCTGCGGTAGTTCTCATAGTGGACGTTGTTGGTCACATCCTTCAGATCTTGCATATGGGTCctGATCAGCATGTTCCGTAACACAGTGAAGTCACAGTGCTCCCCGTTCTCCACAAAAATGCCCTCTGTCAGTCATGGAAAAGAATAGAcagaaagaaaaaag
>TU197456
TTAAGCATAACCTTCTCATCTTTAATATTAATAATGTACAGTTAGAGAGAACAGATGATAATAAAATGAAGAACAGAATAAAGCTGAAGAGTGtagatatatataaaaaataaaaataaaaaaacaactccTAAAGTTATGGCTACCTTCAACATTATTAGATAGGGGAGTGGTTAAAGAATGATTTAGGAAAAGTTTGTCTCAGACCTTAGCTCAAATGAGCCTTTAAGACTTCTCAGACCACGGACTAACTTCTGACTATTACAACTCAGAGACCTGCAACAAGAGACTGGTCCTGAGAAAGCATACAGTTGGCATAGagtattattgtgtgtgtgagtgtggcttGTGAAGGCAGTGTAGGTTGGGTCAGAGGTTGTCTTCTGGGATTTGGGGCTTGTGTTCAGTTGTGAAGTATATAACAATTTACAGTCAATTTCATGATGTATGTGAACCAGAAGAAAATGACAGTTTTTTAAAATATGTGTGTTGTATTTATCTGTGCATTTTCTGTGTCCCTTTTGCATGTCTTCAAGTGCATCTTAAGATTTCTAGAGGTTTGTAAAAATCAAGACTACACTAAAATAATAATTGTTGAACCACTTAAATGATCCTACTGGATTCAAGGGATTGTTGTCCAACCATACATACATAATATATTCAATGCATTTAGCGCTCTCGGTACAGTCTTCAGAACAGGGGACAAGGGATTGATAGGGCTTTAGGTTTAGGTCTTTGACAAAATCCATCACTTCACAATATAAGACATTGCCATAATCACGGTTATCATTGTTTTAGACACCCATATGATTTGTGTAACATTATCTATATAATAGGGACATAATTATCTGCTTCAGTATCCAGAGAATGTTATGACACTGACAATGTTACTGTTTATACCGTTAAGTGTGTCTTCTATTAGTAAAATAGAAGACACAAACACATGGTTTAcaggcacgtgcacacacacaggcacccacacacaagtacacacacatttAAGTGTTTACATATGTCACAATGGAGTGTGCTTGTGAATGGTCTTGAGCTGCCtctgctggaagaaacaggtgaGCTAGCTAGAGAACAGATTGTAGTACACTAGTATAAAGGATGGCTATGCATGATGCCTGCCATGTGTAAAACTCCAAAGATCAGAGGGAAATAATTTCCTCCTTGTCAGGAATAGAAATAAAAGGTTTTGGCAGACCCCCAAAAGAGGGAtgtggctatgtgtgtgtgtatagtggtgcaTGAGTGTGACATTGGGGCGTGTTGTTGTATGTACTGAATGAGATGCATGTGAGGTCCATGTATGACCTAAATAGTACAATAGGGTCAGCACGCCCACTTTAGAAAGTGCAAGCGTAAACACCCTCTTAGCCCTGAGCTAAGTGCAGTGTGAACGCGGCttatttgcgtgtgtgtgtgtgtatatatatatggtttGAGGGTCATAGATTGTGTGAACATCAAAAAGGATGTAAAAACAAGTTTGCAATATTTAATTGGAGGAATAGGTTCAACTTAAAATATTTTTCCCTTCTTTTTGTTCTTTTCCATggtAGAAGCGTCAAGTTTCTGCTGCTCCAGTATACGTTGCTGTGCCTCCCAGTTTGACTTCTCTTCCTCATGGTGACGCCGCTTCTCCTCCAGTTCTTTATACTGAACCTCCAAGTTCTTTTTCATCTGCTCGTGGCGTCGCTCCAGCTGAGAAGGGAGGCAAATGTGTTACTTGTGAATaaaacagacagatacacacatccAAATTGACTTGAGGCTCTACCTCTCCTGTccttattagaggtcgaccgactatggtttttcaacgccgataccgattattgggagGACCaataaaagcc

Function

NR:

description
PREDICTED: septin-7-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0060326 cell chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568881.2 False 1038 mRNA 0.40 3 66298188 66299637
TU197458 False 2713 TUCP 0.43 14 66277821 66298314
TU197457 False 1839 lncRNA 0.43 7 66291552 66298314
TU197456 True 1865 lncRNA 0.35 4 66296020 66298314
Loading

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-50b9.1 LOC106560918 coding downstream 74838 66210436 ~ 66223350 (-)
LOC110494064 NA coding downstream 151919 66144846 ~ 66146269 (-)
znrf1 znrf1 coding downstream 179475 66084226 ~ 66118713 (-)
snrkb LOC106560921 coding downstream 228206 66032023 ~ 66069982 (-)
usb1 usb1 coding downstream 468448 65821657 ~ 65829740 (-)
LOC110494195 LOC106560909 coding upstream 43993 66343630 ~ 66354538 (-)
LOC110494316 NA coding upstream 282483 66582120 ~ 66586583 (-)
LOC110494333 LOC106560895 coding upstream 329922 66629559 ~ 66633818 (-)
LOC110533844 NA coding upstream 337516 66637153 ~ 66638202 (-)
LOC110494342 LOC106560894 coding upstream 341425 66641062 ~ 66643589 (-)
G173636 NA non-coding downstream 39287 66258687 ~ 66258901 (-)
G173619 NA non-coding downstream 41226 66254806 ~ 66256962 (-)
G173570 NA non-coding downstream 107422 66187646 ~ 66190766 (-)
G173577 NA non-coding downstream 149188 66145604 ~ 66149000 (-)
G173651 NA non-coding upstream 866 66300503 ~ 66300721 (-)
G173676 NA non-coding upstream 34276 66333913 ~ 66334944 (-)
G173679 NA non-coding upstream 42460 66342097 ~ 66342307 (-)
G173680 NA non-coding upstream 59287 66358924 ~ 66359445 (-)
G173690 NA non-coding upstream 73502 66373139 ~ 66373747 (-)
G173431 NA other downstream 375959 65921850 ~ 65922229 (-)
G173370 LOC106560927 other downstream 459114 65833341 ~ 65839074 (-)
zcchc14 zcchc14 other downstream 761407 65530911 ~ 65571025 (-)
G173121 NA other downstream 914315 65383437 ~ 65383873 (-)
G172141 NA other downstream 1212000 65085572 ~ 65086188 (-)
G173675 NA other upstream 35775 66335412 ~ 66338386 (-)
G173696 LOC106560906 other upstream 75589 66375226 ~ 66390766 (-)
G174505 NA other upstream 392771 66692408 ~ 66692850 (-)
G177487 NA other upstream 3291498 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 3393972 69648833 ~ 69767366 (-)

Expression

LOC110494122(LOC106560915) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110494122(LOC106560915) Expression in each Bioproject

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LOC110494122(LOC106560915) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network