LOC110494179 (LOC106573656)


Basic Information

Item Value
gene id LOC110494179
gene name LOC106573656
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66334512 ~ 66338446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469234.2
gtgtgtatattgatgagggaaaaaaaatatttaatccattttagaataaggctgtaatgtaaaacaaattaggggaaaagtcaaggggtctgaatacttactgaatGCAGTGTATGTACACTTGTTTAATAcagtgagagtcagagagaggatTGAGCATCATTCAAGAGCCCACATTGCTAACTGGAGTTTGTATTGTGTAGGAGAaaagagtctgggtggagttTGTATTGTGTAGGAGAAAAGTGTCTGGGTGGAGTTTGTATTGTGTAGGAGAAAAGTGTCTGGGTGGAGTTTGTATTGTGTAGGAGAAAAGTGTCTGGGTGGATGCACAAGCCCTGGAGGTTGAGctgacagactggcagagagaccAGGAACCAGACACTGACCATGAGGGATTTTACCGCACCAGCCTGCCAACCATCATCACACAGATGCTGGAGGGGAATGTGCGGGTCGCTCTGATGATCAGTGAATCACTTTAGGATCAGACCACACAGGTGGGGCTCTATGAGATGGAGAACCTCAATAGTTTCCGGGAGGCGCCTGTTGAATTTGGGAAGGAGCATCGCTGGGATCAAAGCACAAATAACAAGTTCCACCTCTATCTACTGGCCTCTAAGAGACTGCATCATCCTCATCCTCTATCAACCCCTGGCTGCTCTGTTCCGGGTTGTGAGGATGGCCTGCCGTCTGGCGATAGGTCAACTACTGCTGGAGCTCCAGCCCTTCCTGCAGGGACTCCTGTCTCGCTCCTGACTGGCCCAGGGATACATCACGCTCACTTCGAAGTTATGTGGCGTCCTGGAGCGCCATATTGAGATGTGTAGTTGTGTTCGCCCACCCTGCCAGCACCTTTTGACAATCATATTAGTCTGTAGCTGACTTATACCAGTGTCCTGAGTAGCGTTTGCATGCAGTGGCTGATGGTGGTGGAGTATGTGAGGGTGTTGATGCAGAAGAGGCTGGTGTGTTGTAATGCAGAGGAGCGACGCGAGCTGGCCCAGAGAATGGCACTGGATGCCCAGTATCTGAGGGATCTCTTCCAGGGCCTGGTTGTGAGGATACACTTGAGTTTAGCCACAGCCAGTTATACACAATCTAGTGGGAAACTCTGCCcagctctgctctcttctctatCCCACAGACTACACACCCAACTCACAGCCGGTCCACACCATACCCAACATACACCTCAAACCACACCCTCCTTCGTTTTAATTCACTGCACCATTTTATGTACAGTTTCAATTTTCACATAAATACAAACACACTGTACactagcagtcaaaagtttggacaccaactaattcaaggatttttctttatttttactattttatacattgtagaataatagtgaagacaaactatgaaataacacatggaatcatgtagtaaccagaaaatttgagattcttcaaatagcaaccctttgccttgatgacagttttgcacactcttggcatccatCTTCTCTGACACCCTGGTGCCTATTCCTAGCATGCCATTCTGTCTGCCTACTGCCATCTGTGCCTGACTACCAATTTGCACCTTTTAAATTCACTAATCACACACACAAGCTTGCGGTTATATAAACTTGAAATGAACAGTAATACAATTTAAAATGTGTGAAATTCATGACTTCTTTATTGGAATAATATGTTGATGAATCTGATAACTTTAAGTGTTTGATCACTGCCAGAAAGAAATACAGGtaacaaaataaataattaattaaatgGGGGATACAAAGTCTATTGAAAGCAGGTTCTTCCATACAGTTGTTGTTTCTGAGTTAATTAAGAAATGAACCTCCCATCATGCTTAAGGTAATTTATAAAAATGCCAAGTTGTGCATTGTTgcctaccatggctagaagagatctcaATGAATTGACTTTGAAAAAGGGGTCCCAAAGGTACATAGGAGACAGCGTTTCCCACCACCTTCGACAAAACACCCAATTGTGGAATTTTTCATGGAAGAATGgcgtcgcatccctccaatagagttccagacacttgtagaatctatgccaagatgcattgaagctgttctggtagcccaacaccctattaaagagaaaggaaaggggggtacctagacAGTTATACAACTGAATGCATACAACTGAaattaagacactatgttggtgttttttatttattttggcaTTTCCTTGGAGCAGTTATCTCGATCGTTAACTACAGCTAAGCATTAATATCATTGTTGCCTTTCCACCggcactgtactgtagatggCCTAAATACTGTACATCTGCAACGTTGAAAAGATGGGATTCCCCGATATTAAACAGTAGCCATGTAATTGCGACAACGTTAAAACATATTCTAAGAATAGCATAATTGACAAATAACTTGCTGTGCATAGATCTCCCCTGAAACATGAATATTTGAGGCTTATATGAATAAACATGTCTAGTGGGAGACCTTGCTCTGAAGTAGCCCACCTTATCCACCTGTTTCATTGAGTTAGGGAATAATTTTATAAAGacaaaagtatttggttgtattGTTGCACTATTTTATATCAAGTGTGGCATCCATCCTCCAGGATAGCTACTGGGTggcaaccatcctccaggatagCTACTGGGTGTGCATGCAGTTGTTCAAGCCCTGATCTAACCACattgtagcctaaacatcagctgcTCAACAGGACCTTGATAAGCAGACTTGGGTGTTTCAGGGCTGGATCCAGATAGAGGGTTGAACACATGTTGACAACATCTGACTAACAGTGCAGttatactttgtgtgtgtgtggggggggtgttaagtgccttgatcaagggcacaatggcaggagatggtaggcctacatgggatcagacactGCAGCCTTCCAGTGTCAATAATACTTACTATTTCATGTAGGGTATAATAATGGTTGAAAGTCATGGGGAAGTCATTGAAAATGTTTATGAACCCCTTAACAGTGAATAACTAGAGGTCTCTATAGCATAATGTCATTTTAGAATTTCTGTAAATATAGTCTTTAATAGACTCACTTGGAAAAGGACAGCTCCTGCACTTCTTTCATCCAAAATCAAGTACTGACTATAACCAGTTagcaagttgaaaatgtcagtatgtGTTCACACTCAGATTACAAGGGGTTaatgccgcattcaaaacaactgggaacttcgacttcagtgcgttcaagacaactgggaactccggGAAAAGCGGGCTCCGATTGGGGAAAAATCTTTTTGAACAGTCACCcgactcggaattccaagtcagaCTTGGGTATCTTTCttgagctccgacctgaagatcactgatgtcatgatttgatCTCATTTTtgtccgagtttccagttgtcttgaaagcgccAAATTTTGACACCAGTGTATGACTTGGGGGATGACGTCAGGTGACATTTCTAGGGAAAACATGTCTGCCCCGGTTGAGGCAATGCTGTCATAATCCATTTTTTTAGGGATTGGTGTAAAAACATTATTCTTGTGGAATACAAAAGACACAGCATGTAAATATGCTATTTCTGTTTTGTTATTTGTAATAAAATAgcagaaatgtat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469234.2 True 3579 mRNA 0.42 3 66334512 66338446

Neighbor

gene id symbol gene type direction distance location
LOC110494127 LOC106560912 coding upstream 2123 66305919 ~ 66332389 (+)
LOC110494104 LOC106560914 coding upstream 36198 66266850 ~ 66298314 (+)
LOC110494096 LOC106561115 coding upstream 68488 66262594 ~ 66266024 (+)
smpd3 LOC106560916 coding upstream 77540 66223586 ~ 66256972 (+)
si:ch211-194m7.8 LOC106560917 coding upstream 123912 66207849 ~ 66210600 (+)
LOC118937288 LOC106560946 coding downstream 425 66338871 ~ 66340622 (+)
LOC110494184 LOC106560911 coding downstream 15961 66354407 ~ 66357907 (+)
LOC110494202 polr2c coding downstream 21357 66359803 ~ 66363985 (+)
LOC110494222 LOC106560908 coding downstream 31344 66369790 ~ 66374755 (+)
LOC110494212 LOC106560906 coding downstream 36686 66375132 ~ 66422337 (+)
LOC110494008 LOC106560923 non-coding upstream 334948 65975745 ~ 66031253 (+)
G172658 NA non-coding upstream 363554 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 404833 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 415294 65918913 ~ 65919218 (+)
G172592 NA non-coding upstream 464244 65869329 ~ 65870268 (+)
G173804 NA non-coding downstream 191669 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 192006 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 193220 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 195012 66533458 ~ 66533659 (+)
G172639 NA other upstream 398379 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 693536 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 797725 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2456279 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 403374 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 617078 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 900444 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 1147717 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2522392 68860838 ~ 68861368 (+)

Expression


Co-expression Network